Wall clock time and date at job start Mon Mar 30 2020 03:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.48482 * 2 1 4 4 C 1.53098 * 109.47602 * 239.97979 * 2 1 3 5 5 C 1.53181 * 109.16097 * 182.40976 * 4 2 1 6 6 H 1.09004 * 109.54439 * 297.02350 * 5 4 2 7 7 C 1.52996 * 109.54419 * 176.84625 * 5 4 2 8 8 N 1.46496 * 109.47317 * 174.99724 * 7 5 4 9 9 C 1.46493 * 120.00267 * 269.99861 * 8 7 5 10 10 C 1.36943 * 119.99848 * 90.00275 * 8 7 5 11 11 H 1.07996 * 119.99673 * 340.62463 * 10 8 7 12 12 C 1.38812 * 119.99843 * 160.63009 * 10 8 7 13 13 N 1.31616 * 119.99943 * 347.22484 * 12 10 8 14 14 Si 1.86801 * 119.99736 * 167.23218 * 12 10 8 15 15 H 1.48497 * 109.47014 * 179.97438 * 14 12 10 16 16 H 1.48505 * 109.46997 * 299.99251 * 14 12 10 17 17 H 1.48491 * 109.47314 * 59.99318 * 14 12 10 18 18 C 1.53175 * 109.03709 * 56.97666 * 5 4 2 19 19 C 1.53085 * 109.16835 * 303.02103 * 18 5 4 20 20 H 1.09004 * 109.48171 * 297.62448 * 19 18 5 21 21 C 1.53000 * 109.49420 * 177.59411 * 19 18 5 22 22 O 1.42898 * 109.48188 * 120.03677 * 2 1 3 23 23 H 1.09000 * 109.47526 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.46932 * 300.02213 * 1 2 3 25 25 H 1.08999 * 109.47632 * 60.01728 * 1 2 3 26 26 H 1.09001 * 109.52472 * 62.50611 * 4 2 1 27 27 H 1.09001 * 109.52135 * 302.31121 * 4 2 1 28 28 H 1.09005 * 109.47030 * 55.00109 * 7 5 4 29 29 H 1.09002 * 109.47350 * 295.00304 * 7 5 4 30 30 H 1.09000 * 109.47591 * 264.87405 * 9 8 7 31 31 H 1.09002 * 109.47462 * 24.87694 * 9 8 7 32 32 H 1.09000 * 109.47327 * 144.87447 * 9 8 7 33 33 H 0.97003 * 119.99700 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.52295 * 62.92847 * 18 5 4 35 35 H 1.09001 * 109.52074 * 183.10889 * 18 5 4 36 36 H 1.08990 * 109.47115 * 300.05531 * 21 19 18 37 37 H 1.09002 * 109.46666 * 60.05374 * 21 19 18 38 38 H 1.08995 * 109.46954 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0404 -0.7221 -1.2497 5 6 3.5710 -0.7708 -1.2124 6 1 3.9689 0.2436 -1.2425 7 6 4.0876 -1.5592 -2.4175 8 7 5.5512 -1.5039 -2.4463 9 6 6.2295 -0.4263 -3.1706 10 6 6.2854 -2.4598 -1.7961 11 1 5.8286 -3.0568 -1.0208 12 6 7.6168 -2.6610 -2.1336 13 7 8.1059 -2.1240 -3.2311 14 14 8.7141 -3.6941 -1.0299 15 1 10.0804 -3.7557 -1.6083 16 1 8.7752 -3.0808 0.3212 17 1 8.1588 -5.0673 -0.9255 18 6 4.0175 -1.4601 0.0806 19 6 3.4308 -0.7096 1.2788 20 1 3.8193 0.3087 1.2957 21 6 3.8227 -1.4268 2.5723 22 8 2.0065 -0.6743 1.1663 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5142 0.8899 25 1 -0.3634 0.5135 -0.8901 26 1 1.7147 -0.1840 -2.1400 27 1 1.6441 -1.7373 -1.2712 28 1 3.6895 -1.1239 -3.3342 29 1 3.7646 -2.5973 -2.3382 30 1 6.4841 -0.7671 -4.1742 31 1 5.5693 0.4385 -3.2372 32 1 7.1398 -0.1483 -2.6395 33 1 9.0361 -2.2650 -3.4671 34 1 3.6612 -2.4902 0.0860 35 1 5.1058 -1.4499 0.1416 36 1 3.4345 -2.4450 2.5550 37 1 4.9090 -1.4535 2.6580 38 1 3.4044 -0.8923 3.4251 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724858692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:30 Heat of formation + Delta-G solvation = -44.296614 kcal Electronic energy + Delta-G solvation = -16864.367625 eV Core-core repulsion = 14320.877573 eV Total energy + Delta-G solvation = -2543.490052 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.35332 -35.96028 -33.48180 -33.17832 -30.82539 -29.40756 -26.24254 -25.90112 -25.48476 -22.03290 -21.49319 -20.28726 -19.40631 -16.64583 -16.21721 -15.34497 -14.93921 -14.50206 -14.12268 -13.77298 -13.22523 -12.85709 -12.74080 -12.47264 -12.14926 -11.96477 -11.80770 -11.52810 -11.37234 -11.06242 -10.81280 -10.77979 -10.63717 -10.38250 -10.22417 -10.19631 -9.91794 -9.71203 -9.57355 -8.98907 -8.47219 -6.70166 -5.66743 -3.09594 3.40673 3.46272 3.46711 3.95138 4.53284 4.97228 5.13255 5.22874 5.34228 5.42410 5.49375 5.52057 5.64595 5.69125 5.73736 5.85851 5.91918 5.99986 6.05282 6.20153 6.24983 6.29020 6.35263 6.43842 6.57924 6.63764 6.75277 6.83395 6.99650 7.07680 7.47248 7.62064 7.76906 7.86483 8.44292 9.29970 9.94676 10.42829 11.38497 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032235 B = 0.007970 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.416222 B = 3512.406683 C = 4158.923768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.089 3.911 3 H 0.050 0.950 4 C -0.142 4.142 5 C -0.108 4.108 6 H 0.060 0.940 7 C 0.159 3.841 8 N -0.604 5.604 9 C 0.166 3.834 10 C -0.248 4.248 11 H 0.071 0.929 12 C -0.003 4.003 13 N -0.912 5.912 14 Si 0.901 3.099 15 H -0.291 1.291 16 H -0.285 1.285 17 H -0.284 1.284 18 C -0.134 4.134 19 C 0.085 3.915 20 H 0.050 0.950 21 C -0.141 4.141 22 O -0.385 6.385 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.034 0.966 29 H 0.045 0.955 30 H 0.026 0.974 31 H -0.007 1.007 32 H 0.044 0.956 33 H 0.251 0.749 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.246 4.335 6.316 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.031 3.969 3 H 0.068 0.932 4 C -0.181 4.181 5 C -0.130 4.130 6 H 0.078 0.922 7 C 0.031 3.969 8 N -0.326 5.326 9 C 0.021 3.979 10 C -0.377 4.377 11 H 0.089 0.911 12 C -0.201 4.201 13 N -0.558 5.558 14 Si 0.731 3.269 15 H -0.217 1.217 16 H -0.212 1.212 17 H -0.210 1.210 18 C -0.171 4.171 19 C 0.028 3.972 20 H 0.068 0.932 21 C -0.199 4.199 22 O -0.305 6.305 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.012 0.988 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.165 4.235 6.357 13.528 hybrid contribution 0.912 -0.412 0.299 1.045 sum -10.253 3.823 6.656 12.808 Atomic orbital electron populations 1.21755 0.93812 1.02597 1.01797 1.22003 0.94217 0.94878 0.85820 0.93151 1.22245 0.97308 1.01198 0.97321 1.21895 0.92717 1.00413 0.97957 0.92151 1.20731 0.85232 0.97361 0.93558 1.43910 0.99326 1.28278 1.61126 1.20774 0.93988 0.86591 0.96553 1.19214 0.92980 1.12872 1.12640 0.91086 1.24961 0.98462 0.99841 0.96802 1.70084 1.14176 1.48458 1.23058 0.86379 0.80060 0.80219 0.80198 1.21703 1.21160 1.21036 1.22223 1.02947 0.98958 0.92995 1.22165 0.80604 0.98456 0.95966 0.93218 1.21736 1.01438 1.00836 0.95859 1.87831 1.21645 1.78146 1.42904 0.92003 0.92392 0.91419 0.91664 0.91468 0.94795 0.93699 0.95539 0.98812 0.93682 0.93851 0.92089 0.88847 0.92066 0.91027 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.56 37.16 0.36 -1.24 16 2 C 0.09 1.24 3.26 -26.68 -0.09 1.15 16 3 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.14 -2.11 4.71 -26.59 -0.13 -2.23 16 5 C -0.11 -1.94 2.48 -90.44 -0.22 -2.16 16 6 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 7 C 0.16 3.30 5.15 -4.05 -0.02 3.28 16 8 N -0.60 -15.19 2.82 -181.13 -0.51 -15.70 16 9 C 0.17 4.15 8.96 59.84 0.54 4.69 16 10 C -0.25 -6.72 8.19 -15.06 -0.12 -6.85 16 11 H 0.07 1.87 6.91 -52.49 -0.36 1.51 16 12 C 0.00 -0.09 5.12 -17.43 -0.09 -0.18 16 13 N -0.91 -26.84 10.48 55.49 0.58 -26.26 16 14 Si 0.90 21.96 29.57 -169.99 -5.03 16.93 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 C -0.13 -2.42 3.80 -26.60 -0.10 -2.52 16 19 C 0.09 1.36 3.26 -26.69 -0.09 1.27 16 20 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 21 C -0.14 -1.98 9.57 37.16 0.36 -1.62 16 22 O -0.39 -6.15 10.05 -35.23 -0.35 -6.51 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 29 H 0.04 0.95 8.04 -51.93 -0.42 0.53 16 30 H 0.03 0.72 7.44 -51.93 -0.39 0.33 16 31 H -0.01 -0.15 8.03 -51.93 -0.42 -0.57 16 32 H 0.04 1.21 7.08 -51.93 -0.37 0.84 16 33 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.94 6.39 -51.93 -0.33 1.61 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 296.28 15.07 4.46 4.46 Total: -1.00 -29.36 296.28 -7.37 -36.73 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -6.91 Total: -3.24 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 0.39 Total: -6.42 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.07 Total: -41.96 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.35 Total: -6.51 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.36 -7.37 -36.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724858692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.568 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds