Wall clock time and date at job start Mon Mar 30 2020 03:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.48482 * 2 1 4 4 C 1.53098 * 109.47602 * 239.97979 * 2 1 3 5 5 C 1.53181 * 109.16097 * 182.40976 * 4 2 1 6 6 H 1.09004 * 109.54439 * 297.02350 * 5 4 2 7 7 C 1.52996 * 109.54419 * 176.84625 * 5 4 2 8 8 N 1.46496 * 109.47317 * 174.99724 * 7 5 4 9 9 C 1.46493 * 120.00267 * 269.99861 * 8 7 5 10 10 C 1.36943 * 119.99848 * 90.00275 * 8 7 5 11 11 H 1.07996 * 119.99673 * 340.62463 * 10 8 7 12 12 C 1.38812 * 119.99843 * 160.63009 * 10 8 7 13 13 N 1.31616 * 119.99943 * 347.22484 * 12 10 8 14 14 Si 1.86801 * 119.99736 * 167.23218 * 12 10 8 15 15 H 1.48497 * 109.47014 * 179.97438 * 14 12 10 16 16 H 1.48505 * 109.46997 * 299.99251 * 14 12 10 17 17 H 1.48491 * 109.47314 * 59.99318 * 14 12 10 18 18 C 1.53175 * 109.03709 * 56.97666 * 5 4 2 19 19 C 1.53085 * 109.16835 * 303.02103 * 18 5 4 20 20 H 1.09004 * 109.48171 * 297.62448 * 19 18 5 21 21 C 1.53000 * 109.49420 * 177.59411 * 19 18 5 22 22 O 1.42898 * 109.48188 * 120.03677 * 2 1 3 23 23 H 1.09000 * 109.47526 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.46932 * 300.02213 * 1 2 3 25 25 H 1.08999 * 109.47632 * 60.01728 * 1 2 3 26 26 H 1.09001 * 109.52472 * 62.50611 * 4 2 1 27 27 H 1.09001 * 109.52135 * 302.31121 * 4 2 1 28 28 H 1.09005 * 109.47030 * 55.00109 * 7 5 4 29 29 H 1.09002 * 109.47350 * 295.00304 * 7 5 4 30 30 H 1.09000 * 109.47591 * 264.87405 * 9 8 7 31 31 H 1.09002 * 109.47462 * 24.87694 * 9 8 7 32 32 H 1.09000 * 109.47327 * 144.87447 * 9 8 7 33 33 H 0.97003 * 119.99700 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.52295 * 62.92847 * 18 5 4 35 35 H 1.09001 * 109.52074 * 183.10889 * 18 5 4 36 36 H 1.08990 * 109.47115 * 300.05531 * 21 19 18 37 37 H 1.09002 * 109.46666 * 60.05374 * 21 19 18 38 38 H 1.08995 * 109.46954 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0404 -0.7221 -1.2497 5 6 3.5710 -0.7708 -1.2124 6 1 3.9689 0.2436 -1.2425 7 6 4.0876 -1.5592 -2.4175 8 7 5.5512 -1.5039 -2.4463 9 6 6.2295 -0.4263 -3.1706 10 6 6.2854 -2.4598 -1.7961 11 1 5.8286 -3.0568 -1.0208 12 6 7.6168 -2.6610 -2.1336 13 7 8.1059 -2.1240 -3.2311 14 14 8.7141 -3.6941 -1.0299 15 1 10.0804 -3.7557 -1.6083 16 1 8.7752 -3.0808 0.3212 17 1 8.1588 -5.0673 -0.9255 18 6 4.0175 -1.4601 0.0806 19 6 3.4308 -0.7096 1.2788 20 1 3.8193 0.3087 1.2957 21 6 3.8227 -1.4268 2.5723 22 8 2.0065 -0.6743 1.1663 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5142 0.8899 25 1 -0.3634 0.5135 -0.8901 26 1 1.7147 -0.1840 -2.1400 27 1 1.6441 -1.7373 -1.2712 28 1 3.6895 -1.1239 -3.3342 29 1 3.7646 -2.5973 -2.3382 30 1 6.4841 -0.7671 -4.1742 31 1 5.5693 0.4385 -3.2372 32 1 7.1398 -0.1483 -2.6395 33 1 9.0361 -2.2650 -3.4671 34 1 3.6612 -2.4902 0.0860 35 1 5.1058 -1.4499 0.1416 36 1 3.4345 -2.4450 2.5550 37 1 4.9090 -1.4535 2.6580 38 1 3.4044 -0.8923 3.4251 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724858692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:28 Heat of formation + Delta-G solvation = -61.012942 kcal Electronic energy + Delta-G solvation = -16865.092499 eV Core-core repulsion = 14320.877573 eV Total energy + Delta-G solvation = -2544.214926 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.63800 -37.74688 -34.93967 -34.52367 -32.70675 -30.64280 -28.06097 -27.51165 -27.01092 -23.73744 -22.67963 -21.74966 -20.90172 -18.67971 -17.42236 -16.98499 -16.49193 -15.98770 -15.55718 -15.29062 -14.91703 -14.47072 -14.39925 -13.65482 -13.36881 -13.27394 -13.07185 -12.83392 -12.76215 -12.71533 -12.62489 -12.57206 -12.21337 -12.01158 -12.00009 -11.77831 -11.64973 -11.18594 -11.07652 -10.61427 -10.26886 -8.75265 -7.79179 -5.23778 1.45981 1.47713 1.54134 2.52400 2.81730 3.33123 3.62978 3.82419 4.01011 4.06943 4.11331 4.27667 4.34037 4.45327 4.57934 4.70557 4.73479 4.79391 4.81960 4.87560 4.92472 5.01456 5.08466 5.12319 5.16781 5.20057 5.28275 5.36831 5.42150 5.50214 5.59861 5.65037 5.74013 6.34799 6.42312 7.18586 7.91880 8.34878 9.24639 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032235 B = 0.007970 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.416222 B = 3512.406683 C = 4158.923768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.055 0.945 4 C -0.135 4.135 5 C -0.100 4.100 6 H 0.053 0.947 7 C 0.157 3.843 8 N -0.619 5.619 9 C 0.180 3.820 10 C -0.246 4.246 11 H 0.075 0.925 12 C -0.061 4.061 13 N -0.944 5.944 14 Si 0.962 3.038 15 H -0.296 1.296 16 H -0.278 1.278 17 H -0.277 1.277 18 C -0.128 4.128 19 C 0.089 3.911 20 H 0.051 0.949 21 C -0.139 4.139 22 O -0.393 6.393 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.037 0.963 30 H 0.000 1.000 31 H 0.025 0.975 32 H 0.018 0.982 33 H 0.245 0.755 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.937 4.699 7.371 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.025 3.975 3 H 0.073 0.927 4 C -0.173 4.173 5 C -0.121 4.121 6 H 0.071 0.929 7 C 0.031 3.969 8 N -0.342 5.342 9 C 0.035 3.965 10 C -0.376 4.376 11 H 0.093 0.907 12 C -0.255 4.255 13 N -0.593 5.593 14 Si 0.791 3.209 15 H -0.223 1.223 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.166 4.166 19 C 0.031 3.969 20 H 0.069 0.931 21 C -0.196 4.196 22 O -0.314 6.314 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.107 0.893 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.019 0.981 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.902 4.600 7.430 15.583 hybrid contribution 1.356 -0.503 -0.056 1.448 sum -11.546 4.096 7.374 14.299 Atomic orbital electron populations 1.21750 0.91430 1.02967 1.03264 1.22220 0.96068 0.94668 0.84561 0.92674 1.22191 0.94480 1.01697 0.98917 1.21708 0.95081 0.99113 0.96212 0.92860 1.20903 0.82846 0.97663 0.95511 1.44153 1.01146 1.27975 1.60931 1.20504 0.93736 0.87603 0.94640 1.19514 0.93307 1.12536 1.12265 0.90746 1.25707 0.99897 1.01689 0.98185 1.70255 1.13965 1.50334 1.24711 0.85403 0.77891 0.78986 0.78630 1.22267 1.20377 1.20305 1.22101 1.01037 0.98897 0.94534 1.22104 0.80811 0.98297 0.95651 0.93076 1.21729 1.01636 1.00746 0.95518 1.87842 1.21215 1.78479 1.43828 0.92175 0.91660 0.89286 0.89695 0.91651 0.93507 0.94410 0.98144 0.95623 0.96306 0.94533 0.93066 0.91883 0.92223 0.90908 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.56 71.98 0.69 -1.92 16 2 C 0.08 2.07 3.26 30.63 0.10 2.17 16 3 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.13 -3.64 4.71 30.69 0.14 -3.50 16 5 C -0.10 -3.45 2.48 -10.68 -0.03 -3.47 16 6 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 7 C 0.16 6.38 5.15 86.38 0.44 6.83 16 8 N -0.62 -31.22 2.82 -726.96 -2.05 -33.27 16 9 C 0.18 9.12 8.96 127.77 1.15 10.27 16 10 C -0.25 -13.46 8.19 84.03 0.69 -12.77 16 11 H 0.07 3.94 6.91 -2.91 -0.02 3.92 16 12 C -0.06 -3.45 5.12 84.86 0.43 -3.01 16 13 N -0.94 -56.84 10.48 21.65 0.23 -56.62 16 14 Si 0.96 45.60 29.57 68.60 2.03 47.63 16 15 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 C -0.13 -4.55 3.80 30.68 0.12 -4.43 16 19 C 0.09 2.69 3.26 30.62 0.10 2.79 16 20 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 21 C -0.14 -3.66 9.57 71.98 0.69 -2.97 16 22 O -0.39 -11.67 10.05 -148.98 -1.50 -13.16 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.77 8.07 -2.38 -0.02 1.75 16 29 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16 30 H 0.00 0.01 7.44 -2.39 -0.02 0.00 16 31 H 0.03 1.10 8.03 -2.39 -0.02 1.08 16 32 H 0.02 1.01 7.08 -2.39 -0.02 1.00 16 33 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 2.62 6.39 -2.39 -0.02 2.61 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -62.56 296.28 4.22 -58.34 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 0.99 Total: 7.12 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 4.52 Total: -10.04 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -1.82 Total: -89.89 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -1.50 Total: -13.16 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -62.56 4.22 -58.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724858692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.674 kcal (2) G-P(sol) polarization free energy of solvation -62.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds