Wall clock time and date at job start Mon Mar 30 2020 03:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47227 * 2 1 4 4 C 1.53005 * 109.47313 * 120.00306 * 2 1 3 5 5 C 1.50704 * 109.46775 * 295.45409 * 4 2 1 6 6 H 1.07992 * 120.00146 * 355.26960 * 5 4 2 7 7 C 1.37874 * 119.99647 * 175.27558 * 5 4 2 8 8 N 1.31510 * 119.99984 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 120.00079 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47108 * 90.00010 * 9 7 5 11 11 H 1.48503 * 109.47016 * 209.99917 * 9 7 5 12 12 H 1.48493 * 109.47091 * 330.00005 * 9 7 5 13 13 N 1.46910 * 109.47069 * 239.99967 * 2 1 3 14 14 C 1.46899 * 110.99764 * 189.67167 * 13 2 1 15 15 C 1.46901 * 110.99490 * 65.72093 * 13 2 1 16 16 H 1.08998 * 110.43746 * 322.65856 * 15 13 2 17 17 C 1.54804 * 110.49035 * 85.35212 * 15 13 2 18 18 C 1.54999 * 102.08965 * 139.55278 * 17 15 13 19 19 O 1.44375 * 103.49548 * 322.97842 * 18 17 15 20 20 C 1.43742 * 106.97421 * 40.05825 * 19 18 17 21 21 H 1.08997 * 110.00121 * 92.98177 * 20 19 18 22 22 C 1.53002 * 109.87941 * 214.06459 * 20 19 18 23 23 H 1.08994 * 109.46996 * 294.35409 * 1 2 3 24 24 H 1.08996 * 109.47519 * 54.35586 * 1 2 3 25 25 H 1.09002 * 109.47024 * 174.35340 * 1 2 3 26 26 H 1.09002 * 109.46931 * 55.45149 * 4 2 1 27 27 H 1.09000 * 109.47254 * 175.44906 * 4 2 1 28 28 H 0.97002 * 120.00152 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.47459 * 79.20596 * 14 13 2 30 30 H 1.09009 * 109.46615 * 199.20435 * 14 13 2 31 31 H 1.08996 * 109.47169 * 319.20332 * 14 13 2 32 32 H 1.08989 * 110.91210 * 257.75015 * 17 15 13 33 33 H 1.09001 * 110.90640 * 21.35904 * 17 15 13 34 34 H 1.09006 * 110.62009 * 204.47404 * 18 17 15 35 35 H 1.08999 * 110.75167 * 81.54405 * 18 17 15 36 36 H 1.09002 * 109.47209 * 168.82559 * 22 20 19 37 37 H 1.09002 * 109.47294 * 288.82393 * 22 20 19 38 38 H 1.08995 * 109.47212 * 48.83108 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6317 0.0511 2.4771 6 1 1.1323 1.0031 2.3749 7 6 1.8960 -0.4576 3.7310 8 7 1.5402 0.2166 4.8026 9 14 2.7595 -2.1047 3.9078 10 1 4.2282 -1.8908 3.9572 11 1 2.3131 -2.7656 5.1605 12 1 2.4236 -2.9668 2.7464 13 7 2.0197 -0.6925 -1.1995 14 6 3.4697 -0.9149 -1.1238 15 6 1.6634 0.0480 -2.4171 16 1 0.6732 0.4923 -2.3164 17 6 2.7213 1.1375 -2.7177 18 6 2.8595 1.0394 -4.2584 19 8 2.7431 -0.3761 -4.5177 20 6 1.7159 -0.8791 -3.6470 21 1 0.7543 -0.8689 -4.1601 22 6 2.0570 -2.3050 -3.2095 23 1 -0.3633 0.4238 0.9362 24 1 -0.3634 0.5988 -0.8351 25 1 -0.3633 -1.0227 -0.1011 26 1 1.6117 -1.7228 1.2908 27 1 3.1270 -0.7925 1.2094 28 1 1.7264 -0.1411 5.6848 29 1 3.6728 -1.7739 -0.4844 30 1 3.8607 -1.1055 -2.1234 31 1 3.9517 -0.0303 -0.7078 32 1 2.3604 2.1224 -2.4216 33 1 3.6669 0.9074 -2.2269 34 1 3.8327 1.4100 -4.5809 35 1 2.0581 1.5876 -4.7538 36 1 1.3890 -2.6071 -2.4029 37 1 1.9363 -2.9830 -4.0544 38 1 3.0886 -2.3407 -2.8594 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829178187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:31 Heat of formation + Delta-G solvation = -33.918154 kcal Electronic energy + Delta-G solvation = -16998.723772 eV Core-core repulsion = 14455.683764 eV Total energy + Delta-G solvation = -2543.040008 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.15783 -36.99099 -33.36867 -31.74447 -31.28428 -29.67741 -28.13153 -26.07895 -24.10359 -23.02618 -21.94576 -20.06810 -18.66410 -17.15619 -16.43439 -15.81497 -15.42009 -14.80953 -14.29893 -14.07639 -13.93662 -13.13756 -12.61552 -12.53101 -12.28275 -12.15342 -11.79651 -11.69821 -11.53771 -11.12368 -11.10242 -10.97049 -10.77572 -10.51746 -10.37637 -9.97794 -9.79642 -9.73584 -9.42066 -9.16548 -8.53992 -7.80222 -6.05390 -4.03012 3.30445 3.38446 3.43208 3.94224 4.23246 4.44890 4.74787 4.91927 5.09153 5.17476 5.25973 5.28913 5.52832 5.62885 5.64390 5.68903 5.81534 5.86501 5.91630 6.06317 6.08038 6.12401 6.24249 6.27798 6.37439 6.61518 6.63541 6.74240 6.99029 7.04914 7.14313 7.33515 7.54676 7.63660 7.86216 8.52085 8.98458 9.57190 11.07776 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042485 B = 0.007045 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.899176 B = 3973.330686 C = 4170.146129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.093 3.907 3 H 0.034 0.966 4 C -0.007 4.007 5 C -0.516 4.516 6 H 0.072 0.928 7 C 0.068 3.932 8 N -0.904 5.904 9 Si 0.877 3.123 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.263 1.263 13 N -0.525 5.525 14 C 0.020 3.980 15 C 0.051 3.949 16 H 0.094 0.906 17 C -0.195 4.195 18 C 0.051 3.949 19 O -0.380 6.380 20 C 0.079 3.921 21 H 0.065 0.935 22 C -0.141 4.141 23 H 0.074 0.926 24 H 0.031 0.969 25 H 0.053 0.947 26 H 0.026 0.974 27 H 0.012 0.988 28 H 0.263 0.737 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.448 -0.912 -15.945 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.014 4.014 3 H 0.052 0.948 4 C -0.045 4.045 5 C -0.555 4.555 6 H 0.090 0.910 7 C -0.133 4.133 8 N -0.543 5.543 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.187 1.187 13 N -0.248 5.248 14 C -0.128 4.128 15 C -0.059 4.059 16 H 0.112 0.888 17 C -0.234 4.234 18 C -0.026 4.026 19 O -0.299 6.299 20 C 0.021 3.979 21 H 0.083 0.917 22 C -0.198 4.198 23 H 0.093 0.907 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.030 0.970 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.326 -1.517 -15.898 16.025 hybrid contribution 0.727 0.254 0.488 0.912 sum 2.053 -1.263 -15.410 15.597 Atomic orbital electron populations 1.21775 0.94934 1.01195 1.01028 1.21677 0.95327 0.95379 0.89026 0.94832 1.19699 0.95788 0.96757 0.92261 1.21075 1.38706 1.06681 0.89002 0.90996 1.24985 0.95299 0.97191 0.95860 1.69908 1.47754 1.38723 0.97919 0.86817 0.80053 0.84955 0.77731 1.20450 1.21445 1.18729 1.62343 1.13536 1.47357 1.01609 1.22591 0.88243 1.00739 1.01193 1.23193 0.99114 0.91944 0.91641 0.88794 1.23909 1.01909 1.00655 0.96885 1.23391 1.01467 0.83184 0.94606 1.88872 1.57974 1.21560 1.61535 1.22760 0.90741 0.95400 0.88988 0.91710 1.21929 1.03802 0.93306 1.00754 0.90722 0.94996 0.92744 0.95584 0.96966 0.92761 0.91292 0.91460 0.95137 0.90464 0.89326 0.89480 0.92524 0.89597 0.93903 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.94 37.16 0.33 -2.09 16 2 C 0.09 1.81 1.95 -67.71 -0.13 1.68 16 3 H 0.03 0.69 7.99 -51.93 -0.41 0.27 16 4 C -0.01 -0.17 3.22 -27.88 -0.09 -0.26 16 5 C -0.52 -14.34 8.78 -34.44 -0.30 -14.64 16 6 H 0.07 2.14 7.48 -52.49 -0.39 1.75 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 9 Si 0.88 21.66 27.57 -169.99 -4.69 16.97 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.26 -6.27 6.41 56.52 0.36 -5.91 16 13 N -0.53 -8.67 3.13 -225.07 -0.70 -9.37 16 14 C 0.02 0.32 5.76 60.06 0.35 0.66 16 15 C 0.05 0.72 2.88 -66.18 -0.19 0.53 16 16 H 0.09 1.31 6.00 -51.93 -0.31 1.00 16 17 C -0.19 -2.49 6.17 -24.73 -0.15 -2.65 16 18 C 0.05 0.58 7.72 38.21 0.29 0.88 16 19 O -0.38 -5.30 11.19 -35.23 -0.39 -5.69 16 20 C 0.08 1.06 3.75 -26.15 -0.10 0.96 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 22 C -0.14 -1.88 8.39 37.16 0.31 -1.57 16 23 H 0.07 1.53 6.87 -51.93 -0.36 1.18 16 24 H 0.03 0.50 6.46 -51.93 -0.34 0.16 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.03 0.63 6.87 -51.93 -0.36 0.27 16 27 H 0.01 0.28 6.06 -51.93 -0.31 -0.03 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 29 H 0.07 1.15 7.36 -51.93 -0.38 0.76 16 30 H 0.07 0.97 5.14 -51.92 -0.27 0.70 16 31 H 0.03 0.50 6.87 -51.93 -0.36 0.14 16 32 H 0.08 0.94 8.14 -51.94 -0.42 0.52 16 33 H 0.09 1.21 5.21 -51.93 -0.27 0.94 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.22 7.47 -51.93 -0.39 0.83 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.93 5.27 -51.93 -0.27 0.66 16 LS Contribution 281.66 15.07 4.24 4.24 Total: -1.00 -29.64 281.66 -6.67 -36.31 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.13 Total: -0.97 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 0.22 Total: -14.65 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.07 Total: -36.22 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.39 Total: -5.69 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.69 Total: 16.97 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.64 -6.67 -36.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829178187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.395 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds