Wall clock time and date at job start Mon Mar 30 2020 03:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47227 * 2 1 4 4 C 1.53005 * 109.47313 * 120.00306 * 2 1 3 5 5 C 1.50704 * 109.46775 * 295.45409 * 4 2 1 6 6 H 1.07992 * 120.00146 * 355.26960 * 5 4 2 7 7 C 1.37874 * 119.99647 * 175.27558 * 5 4 2 8 8 N 1.31510 * 119.99984 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 120.00079 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47108 * 90.00010 * 9 7 5 11 11 H 1.48503 * 109.47016 * 209.99917 * 9 7 5 12 12 H 1.48493 * 109.47091 * 330.00005 * 9 7 5 13 13 N 1.46910 * 109.47069 * 239.99967 * 2 1 3 14 14 C 1.46899 * 110.99764 * 189.67167 * 13 2 1 15 15 C 1.46901 * 110.99490 * 65.72093 * 13 2 1 16 16 H 1.08998 * 110.43746 * 322.65856 * 15 13 2 17 17 C 1.54804 * 110.49035 * 85.35212 * 15 13 2 18 18 C 1.54999 * 102.08965 * 139.55278 * 17 15 13 19 19 O 1.44375 * 103.49548 * 322.97842 * 18 17 15 20 20 C 1.43742 * 106.97421 * 40.05825 * 19 18 17 21 21 H 1.08997 * 110.00121 * 92.98177 * 20 19 18 22 22 C 1.53002 * 109.87941 * 214.06459 * 20 19 18 23 23 H 1.08994 * 109.46996 * 294.35409 * 1 2 3 24 24 H 1.08996 * 109.47519 * 54.35586 * 1 2 3 25 25 H 1.09002 * 109.47024 * 174.35340 * 1 2 3 26 26 H 1.09002 * 109.46931 * 55.45149 * 4 2 1 27 27 H 1.09000 * 109.47254 * 175.44906 * 4 2 1 28 28 H 0.97002 * 120.00152 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.47459 * 79.20596 * 14 13 2 30 30 H 1.09009 * 109.46615 * 199.20435 * 14 13 2 31 31 H 1.08996 * 109.47169 * 319.20332 * 14 13 2 32 32 H 1.08989 * 110.91210 * 257.75015 * 17 15 13 33 33 H 1.09001 * 110.90640 * 21.35904 * 17 15 13 34 34 H 1.09006 * 110.62009 * 204.47404 * 18 17 15 35 35 H 1.08999 * 110.75167 * 81.54405 * 18 17 15 36 36 H 1.09002 * 109.47209 * 168.82559 * 22 20 19 37 37 H 1.09002 * 109.47294 * 288.82393 * 22 20 19 38 38 H 1.08995 * 109.47212 * 48.83108 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6317 0.0511 2.4771 6 1 1.1323 1.0031 2.3749 7 6 1.8960 -0.4576 3.7310 8 7 1.5402 0.2166 4.8026 9 14 2.7595 -2.1047 3.9078 10 1 4.2282 -1.8908 3.9572 11 1 2.3131 -2.7656 5.1605 12 1 2.4236 -2.9668 2.7464 13 7 2.0197 -0.6925 -1.1995 14 6 3.4697 -0.9149 -1.1238 15 6 1.6634 0.0480 -2.4171 16 1 0.6732 0.4923 -2.3164 17 6 2.7213 1.1375 -2.7177 18 6 2.8595 1.0394 -4.2584 19 8 2.7431 -0.3761 -4.5177 20 6 1.7159 -0.8791 -3.6470 21 1 0.7543 -0.8689 -4.1601 22 6 2.0570 -2.3050 -3.2095 23 1 -0.3633 0.4238 0.9362 24 1 -0.3634 0.5988 -0.8351 25 1 -0.3633 -1.0227 -0.1011 26 1 1.6117 -1.7228 1.2908 27 1 3.1270 -0.7925 1.2094 28 1 1.7264 -0.1411 5.6848 29 1 3.6728 -1.7739 -0.4844 30 1 3.8607 -1.1055 -2.1234 31 1 3.9517 -0.0303 -0.7078 32 1 2.3604 2.1224 -2.4216 33 1 3.6669 0.9074 -2.2269 34 1 3.8327 1.4100 -4.5809 35 1 2.0581 1.5876 -4.7538 36 1 1.3890 -2.6071 -2.4029 37 1 1.9363 -2.9830 -4.0544 38 1 3.0886 -2.3407 -2.8594 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829178187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:31 Heat of formation + Delta-G solvation = -53.254180 kcal Electronic energy + Delta-G solvation = -16999.562245 eV Core-core repulsion = 14455.683764 eV Total energy + Delta-G solvation = -2543.878481 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.28277 -38.33325 -35.21144 -33.46964 -32.30962 -30.93467 -29.88237 -27.35133 -25.43786 -24.73320 -22.98841 -21.48570 -20.07569 -19.10777 -17.68327 -16.96086 -16.56072 -16.24665 -15.91960 -15.65678 -15.26057 -14.72726 -14.30749 -13.76276 -13.62387 -13.49291 -13.17430 -13.08762 -12.87078 -12.71148 -12.50472 -12.34036 -12.06668 -11.86749 -11.80641 -11.61455 -11.48009 -11.31737 -11.13869 -10.73633 -10.54105 -9.14503 -8.27688 -6.29986 1.34939 1.37609 1.49312 2.36589 2.91170 2.99941 3.07973 3.69906 3.90071 4.01431 4.14912 4.25822 4.27703 4.33632 4.45727 4.56501 4.64063 4.68461 4.73072 4.79104 4.90513 4.94380 5.05950 5.07020 5.12100 5.16438 5.22040 5.31586 5.39761 5.55013 5.57250 5.68446 5.99205 6.14826 6.27715 6.35986 6.77092 7.33738 8.88699 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042485 B = 0.007045 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.899176 B = 3973.330686 C = 4170.146129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.102 3.898 3 H 0.020 0.980 4 C -0.001 4.001 5 C -0.519 4.519 6 H 0.036 0.964 7 C 0.007 3.993 8 N -0.951 5.951 9 Si 0.943 3.057 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.247 1.247 13 N -0.523 5.523 14 C 0.024 3.976 15 C 0.047 3.953 16 H 0.098 0.902 17 C -0.194 4.194 18 C 0.053 3.947 19 O -0.394 6.394 20 C 0.082 3.918 21 H 0.079 0.921 22 C -0.138 4.138 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.022 0.978 27 H 0.015 0.985 28 H 0.265 0.735 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.022 0.978 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.963 -1.894 -17.996 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.006 4.006 3 H 0.038 0.962 4 C -0.038 4.038 5 C -0.557 4.557 6 H 0.054 0.946 7 C -0.189 4.189 8 N -0.592 5.592 9 Si 0.767 3.233 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.171 1.171 13 N -0.247 5.247 14 C -0.124 4.124 15 C -0.062 4.062 16 H 0.116 0.884 17 C -0.233 4.233 18 C -0.024 4.024 19 O -0.314 6.314 20 C 0.024 3.976 21 H 0.097 0.903 22 C -0.196 4.196 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.041 0.959 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.843 -2.496 -17.979 18.245 hybrid contribution 0.540 0.652 1.082 1.374 sum 2.383 -1.843 -16.897 17.164 Atomic orbital electron populations 1.21668 0.94141 1.01743 1.00683 1.21405 0.95930 0.94279 0.89000 0.96179 1.19579 0.95858 0.96122 0.92274 1.21368 1.37639 1.05738 0.90961 0.94556 1.25896 0.96290 1.01249 0.95509 1.70055 1.49664 1.40907 0.98586 0.85758 0.79071 0.80258 0.78178 1.19475 1.21146 1.17067 1.62279 1.13879 1.47271 1.01239 1.22576 0.87856 0.99970 1.02000 1.23293 0.99672 0.92519 0.90758 0.88418 1.23881 1.00900 1.00409 0.98109 1.23529 1.03130 0.82268 0.93441 1.88860 1.58144 1.22862 1.61553 1.22760 0.91378 0.94939 0.88530 0.90302 1.21881 1.03032 0.93747 1.00901 0.93707 0.92031 0.92355 0.95951 0.96637 0.92626 0.92107 0.89754 0.95948 0.89951 0.90301 0.87914 0.90793 0.90508 0.92753 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.50 8.94 71.98 0.64 -3.86 16 2 C 0.10 3.90 1.95 44.91 0.09 3.99 16 3 H 0.02 0.83 7.99 -2.39 -0.02 0.81 16 4 C 0.00 -0.03 3.22 29.85 0.10 0.07 16 5 C -0.52 -29.41 8.78 25.60 0.22 -29.19 16 6 H 0.04 2.26 7.48 -2.91 -0.02 2.24 16 7 C 0.01 0.42 5.47 84.65 0.46 0.88 16 8 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 9 Si 0.94 44.53 27.57 68.60 1.89 46.42 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.25 -10.95 6.41 99.48 0.64 -10.31 16 13 N -0.52 -16.41 3.13 -865.99 -2.71 -19.12 16 14 C 0.02 0.71 5.76 127.69 0.73 1.45 16 15 C 0.05 1.21 2.88 45.90 0.13 1.34 16 16 H 0.10 2.46 6.00 -2.39 -0.01 2.45 16 17 C -0.19 -4.53 6.17 31.89 0.20 -4.33 16 18 C 0.05 1.05 7.72 72.67 0.56 1.61 16 19 O -0.39 -9.79 11.19 -148.98 -1.67 -11.45 16 20 C 0.08 1.95 3.75 30.97 0.12 2.07 16 21 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 22 C -0.14 -3.36 8.39 71.98 0.60 -2.75 16 23 H 0.04 1.87 6.87 -2.39 -0.02 1.85 16 24 H 0.06 1.83 6.46 -2.39 -0.02 1.81 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.02 1.05 6.87 -2.39 -0.02 1.04 16 27 H 0.02 0.71 6.06 -2.39 -0.01 0.69 16 28 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.06 1.93 7.36 -2.39 -0.02 1.91 16 30 H 0.08 2.26 5.14 -2.38 -0.01 2.25 16 31 H 0.02 0.71 6.87 -2.39 -0.02 0.69 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 2.01 5.21 -2.39 -0.01 2.00 16 34 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 2.01 7.47 -2.39 -0.02 1.99 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.53 5.27 -2.39 -0.01 1.52 16 Total: -1.00 -63.61 281.66 2.63 -60.98 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.96 Total: 11.12 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 3.86 Total: -28.73 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -2.41 Total: -78.34 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -1.67 Total: -11.45 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.89 Total: 46.42 kcal Total: -63.61 2.63 -60.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829178187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.723 kcal (2) G-P(sol) polarization free energy of solvation -63.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds