Wall clock time and date at job start Mon Mar 30 2020 04:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99997 * 2 1 4 4 C 1.52994 * 109.47036 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47376 * 65.08761 * 4 3 2 6 6 C 1.46902 * 111.00085 * 198.87311 * 5 4 3 7 7 H 1.08993 * 109.47351 * 190.52869 * 6 5 4 8 8 C 1.53005 * 109.47057 * 310.52645 * 6 5 4 9 9 C 1.52999 * 109.47112 * 70.52475 * 6 5 4 10 10 C 1.50705 * 109.46894 * 63.07634 * 9 6 5 11 11 H 1.08001 * 119.99854 * 5.01045 * 10 9 6 12 12 C 1.37875 * 119.99724 * 185.01454 * 10 9 6 13 13 N 1.31512 * 120.00422 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99656 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47096 * 59.99893 * 14 12 10 16 16 H 1.48504 * 109.47153 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47150 * 299.99659 * 14 12 10 18 18 C 1.46896 * 110.99972 * 74.92113 * 5 4 3 19 19 C 1.53012 * 117.49609 * 255.82262 * 18 5 4 20 20 C 1.53001 * 59.99785 * 252.51178 * 19 18 5 21 21 H 1.09003 * 109.47075 * 299.99699 * 1 2 3 22 22 H 1.09001 * 109.47228 * 59.99530 * 1 2 3 23 23 H 1.08999 * 109.47241 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46768 * 60.00465 * 3 2 1 25 25 H 1.09000 * 109.47100 * 300.00569 * 3 2 1 26 26 H 1.08999 * 109.47141 * 185.09141 * 4 3 2 27 27 H 1.09003 * 109.47242 * 305.08719 * 4 3 2 28 28 H 1.09002 * 109.46726 * 60.00496 * 8 6 5 29 29 H 1.08998 * 109.47233 * 179.97438 * 8 6 5 30 30 H 1.09000 * 109.47372 * 300.00221 * 8 6 5 31 31 H 1.09000 * 109.46969 * 183.06770 * 9 6 5 32 32 H 1.08994 * 109.47507 * 303.07262 * 9 6 5 33 33 H 0.97002 * 120.00236 * 179.97438 * 13 12 10 34 34 H 1.08998 * 115.55657 * 41.52845 * 18 5 4 35 35 H 1.09002 * 117.49619 * 359.97438 * 19 18 5 36 36 H 1.08999 * 117.49783 * 145.01993 * 19 18 5 37 37 H 1.09007 * 117.49443 * 252.51239 * 20 19 18 38 38 H 1.09000 * 117.50256 * 107.49281 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9770 0.5647 -1.2570 6 6 5.3378 0.0263 -1.1286 7 1 5.7109 -0.2568 -2.1128 8 6 6.2532 1.0927 -0.5236 9 6 5.3160 -1.2032 -0.2183 10 6 4.4749 -2.2818 -0.8509 11 1 4.0699 -2.1391 -1.8419 12 6 4.2225 -3.4506 -0.1646 13 7 4.7160 -3.6245 1.0419 14 14 3.1793 -4.7873 -0.9486 15 1 3.8220 -5.2422 -2.2077 16 1 3.0587 -5.9339 -0.0126 17 1 1.8284 -4.2487 -1.2489 18 6 3.8906 1.5165 -2.3726 19 6 2.7307 1.3485 -3.3563 20 6 4.1535 0.9798 -3.7811 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6887 1.8463 0.8900 25 1 1.6885 1.8465 -0.8899 26 1 3.9785 2.1764 0.0906 27 1 3.8513 0.5670 0.8400 28 1 5.8801 1.3758 0.4607 29 1 7.2627 0.6931 -0.4279 30 1 6.2687 1.9687 -1.1721 31 1 6.3329 -1.5702 -0.0791 32 1 4.8921 -0.9320 0.7486 33 1 4.5380 -4.4467 1.5249 34 1 4.2201 2.5316 -2.1512 35 1 2.0321 0.5314 -3.1758 36 1 2.2968 2.2532 -3.7820 37 1 4.6557 1.6420 -4.4863 38 1 4.3908 -0.0795 -3.8799 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:49 Heat of formation + Delta-G solvation = -16.013874 kcal Electronic energy + Delta-G solvation = -17012.126214 eV Core-core repulsion = 14469.862594 eV Total energy + Delta-G solvation = -2542.263620 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.66705 -36.88292 -34.88781 -32.48950 -30.84500 -27.83236 -27.09989 -25.63960 -23.10517 -22.25562 -21.93921 -20.64759 -18.31129 -16.25829 -15.92771 -15.73952 -15.52167 -14.58388 -14.37256 -14.15661 -13.76507 -13.02132 -12.50966 -12.32339 -12.14484 -11.68439 -11.53833 -11.28221 -11.15077 -11.07495 -10.89730 -10.50217 -10.43959 -10.36982 -9.98223 -9.88902 -9.55276 -9.07997 -8.98392 -8.84263 -8.09723 -7.37288 -5.73470 -3.68662 3.50950 3.53482 3.58882 4.21866 4.34329 4.49578 4.70497 5.33728 5.39080 5.47840 5.55553 5.61544 5.67373 5.72905 5.77984 5.86732 5.88373 5.95193 5.99814 6.00075 6.06921 6.10965 6.23369 6.40380 6.49300 6.61917 6.64568 6.74574 7.10644 7.62204 7.75562 7.85607 8.04852 8.16212 8.26679 8.73153 9.34018 9.91489 11.39165 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.010963 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.542670 B = 2553.430421 C = 3005.805533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.351 6.351 3 C 0.071 3.929 4 C 0.061 3.939 5 N -0.471 5.471 6 C 0.089 3.911 7 H 0.070 0.930 8 C -0.182 4.182 9 C 0.032 3.968 10 C -0.475 4.475 11 H 0.056 0.944 12 C 0.052 3.948 13 N -0.907 5.907 14 Si 0.887 3.113 15 H -0.282 1.282 16 H -0.293 1.293 17 H -0.278 1.278 18 C 0.008 3.992 19 C -0.170 4.170 20 C -0.173 4.173 21 H 0.029 0.971 22 H 0.031 0.969 23 H 0.080 0.920 24 H 0.036 0.964 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.013 0.987 32 H 0.022 0.978 33 H 0.255 0.745 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 11.920 -4.308 13.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C -0.006 4.006 4 C -0.067 4.067 5 N -0.194 5.194 6 C -0.019 4.019 7 H 0.088 0.912 8 C -0.241 4.241 9 C -0.005 4.005 10 C -0.513 4.513 11 H 0.074 0.926 12 C -0.146 4.146 13 N -0.549 5.549 14 Si 0.717 3.283 15 H -0.208 1.208 16 H -0.219 1.219 17 H -0.204 1.204 18 C -0.101 4.101 19 C -0.207 4.207 20 C -0.210 4.210 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.099 0.901 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.367 11.217 -4.267 12.771 hybrid contribution -0.340 0.187 -0.153 0.417 sum -4.707 11.403 -4.420 13.104 Atomic orbital electron populations 1.22657 0.83171 1.02184 0.98535 1.88266 1.17401 1.26319 1.94887 1.22481 0.94423 0.85355 0.98344 1.22075 0.92899 0.97178 0.94512 1.61849 1.24869 1.31155 1.01551 1.21948 0.84517 0.94971 1.00452 0.91224 1.22554 1.01280 0.99578 1.00650 1.19181 0.96555 0.90410 0.94372 1.21003 1.29435 0.99180 1.01710 0.92585 1.24921 0.96307 0.98451 0.94932 1.69948 1.46610 1.26359 1.11968 0.86731 0.81431 0.81446 0.78731 1.20799 1.21899 1.20358 1.22425 1.03537 0.94780 0.89366 1.23011 0.92014 1.02623 1.03098 1.22951 0.99195 1.02424 0.96425 0.95225 0.95041 0.90139 0.94543 0.93992 0.94526 0.88930 0.92998 0.92654 0.94355 0.96896 0.95966 0.93539 0.90987 0.88148 0.89983 0.89670 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.35 -7.09 10.65 -35.23 -0.38 -7.47 16 3 C 0.07 1.20 6.13 37.15 0.23 1.43 16 4 C 0.06 1.11 3.89 -3.83 -0.01 1.10 16 5 N -0.47 -9.18 4.10 -218.72 -0.90 -10.08 16 6 C 0.09 1.84 2.21 -67.71 -0.15 1.69 16 7 H 0.07 1.48 6.97 -51.93 -0.36 1.11 16 8 C -0.18 -3.17 8.47 37.16 0.31 -2.85 16 9 C 0.03 0.83 4.43 -27.88 -0.12 0.70 16 10 C -0.47 -13.69 8.79 -34.44 -0.30 -13.99 16 11 H 0.06 1.63 7.75 -52.49 -0.41 1.22 16 12 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.91 -28.13 13.29 55.43 0.74 -27.39 16 14 Si 0.89 22.96 29.54 -169.99 -5.02 17.94 16 15 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 17 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 18 C 0.01 0.13 3.87 -67.71 -0.26 -0.13 16 19 C -0.17 -2.53 9.83 -26.72 -0.26 -2.79 16 20 C -0.17 -2.62 9.64 -26.73 -0.26 -2.88 16 21 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.65 7.01 -51.93 -0.36 0.29 16 26 H 0.04 0.58 7.20 -51.93 -0.37 0.20 16 27 H 0.09 1.94 5.97 -51.93 -0.31 1.63 16 28 H 0.05 0.89 6.62 -51.93 -0.34 0.54 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.59 7.58 -51.93 -0.39 0.20 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.62 6.37 -51.93 -0.33 0.29 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.07 1.07 7.86 -51.93 -0.41 0.67 16 35 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.10 1.77 7.75 -51.93 -0.40 1.36 16 LS Contribution 305.30 15.07 4.60 4.60 Total: -1.00 -31.65 305.30 -7.41 -39.06 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.64 Total: -1.99 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 0.18 Total: -14.66 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.16 Total: -37.47 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.38 Total: -7.47 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.65 -7.41 -39.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.046 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds