Wall clock time and date at job start Mon Mar 30 2020 04:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99997 * 2 1 4 4 C 1.52994 * 109.47036 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47376 * 65.08761 * 4 3 2 6 6 C 1.46902 * 111.00085 * 198.87311 * 5 4 3 7 7 H 1.08993 * 109.47351 * 190.52869 * 6 5 4 8 8 C 1.53005 * 109.47057 * 310.52645 * 6 5 4 9 9 C 1.52999 * 109.47112 * 70.52475 * 6 5 4 10 10 C 1.50705 * 109.46894 * 63.07634 * 9 6 5 11 11 H 1.08001 * 119.99854 * 5.01045 * 10 9 6 12 12 C 1.37875 * 119.99724 * 185.01454 * 10 9 6 13 13 N 1.31512 * 120.00422 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99656 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47096 * 59.99893 * 14 12 10 16 16 H 1.48504 * 109.47153 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47150 * 299.99659 * 14 12 10 18 18 C 1.46896 * 110.99972 * 74.92113 * 5 4 3 19 19 C 1.53012 * 117.49609 * 255.82262 * 18 5 4 20 20 C 1.53001 * 59.99785 * 252.51178 * 19 18 5 21 21 H 1.09003 * 109.47075 * 299.99699 * 1 2 3 22 22 H 1.09001 * 109.47228 * 59.99530 * 1 2 3 23 23 H 1.08999 * 109.47241 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46768 * 60.00465 * 3 2 1 25 25 H 1.09000 * 109.47100 * 300.00569 * 3 2 1 26 26 H 1.08999 * 109.47141 * 185.09141 * 4 3 2 27 27 H 1.09003 * 109.47242 * 305.08719 * 4 3 2 28 28 H 1.09002 * 109.46726 * 60.00496 * 8 6 5 29 29 H 1.08998 * 109.47233 * 179.97438 * 8 6 5 30 30 H 1.09000 * 109.47372 * 300.00221 * 8 6 5 31 31 H 1.09000 * 109.46969 * 183.06770 * 9 6 5 32 32 H 1.08994 * 109.47507 * 303.07262 * 9 6 5 33 33 H 0.97002 * 120.00236 * 179.97438 * 13 12 10 34 34 H 1.08998 * 115.55657 * 41.52845 * 18 5 4 35 35 H 1.09002 * 117.49619 * 359.97438 * 19 18 5 36 36 H 1.08999 * 117.49783 * 145.01993 * 19 18 5 37 37 H 1.09007 * 117.49443 * 252.51239 * 20 19 18 38 38 H 1.09000 * 117.50256 * 107.49281 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9770 0.5647 -1.2570 6 6 5.3378 0.0263 -1.1286 7 1 5.7109 -0.2568 -2.1128 8 6 6.2532 1.0927 -0.5236 9 6 5.3160 -1.2032 -0.2183 10 6 4.4749 -2.2818 -0.8509 11 1 4.0699 -2.1391 -1.8419 12 6 4.2225 -3.4506 -0.1646 13 7 4.7160 -3.6245 1.0419 14 14 3.1793 -4.7873 -0.9486 15 1 3.8220 -5.2422 -2.2077 16 1 3.0587 -5.9339 -0.0126 17 1 1.8284 -4.2487 -1.2489 18 6 3.8906 1.5165 -2.3726 19 6 2.7307 1.3485 -3.3563 20 6 4.1535 0.9798 -3.7811 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6887 1.8463 0.8900 25 1 1.6885 1.8465 -0.8899 26 1 3.9785 2.1764 0.0906 27 1 3.8513 0.5670 0.8400 28 1 5.8801 1.3758 0.4607 29 1 7.2627 0.6931 -0.4279 30 1 6.2687 1.9687 -1.1721 31 1 6.3329 -1.5702 -0.0791 32 1 4.8921 -0.9320 0.7486 33 1 4.5380 -4.4467 1.5249 34 1 4.2201 2.5316 -2.1512 35 1 2.0321 0.5314 -3.1758 36 1 2.2968 2.2532 -3.7820 37 1 4.6557 1.6420 -4.4863 38 1 4.3908 -0.0795 -3.8799 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:49 Heat of formation + Delta-G solvation = -37.084906 kcal Electronic energy + Delta-G solvation = -17013.039923 eV Core-core repulsion = 14469.862594 eV Total energy + Delta-G solvation = -2543.177329 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.08151 -38.25597 -36.36757 -34.57641 -32.45211 -29.53421 -28.75655 -26.92582 -25.12589 -23.61631 -23.17217 -22.15020 -19.84143 -18.30695 -17.51133 -17.07864 -16.89370 -16.44889 -15.84612 -15.53833 -15.24851 -14.64500 -14.03062 -13.91090 -13.71147 -13.46145 -13.10409 -12.84723 -12.65132 -12.51890 -12.44799 -12.27192 -12.26004 -11.87993 -11.71917 -11.21334 -11.04827 -11.01473 -10.72307 -10.41811 -10.33996 -8.79124 -8.03100 -6.04775 1.40194 1.44663 1.51316 2.51793 2.96238 3.04275 3.20116 3.33740 4.14353 4.14500 4.18496 4.29325 4.36798 4.45270 4.46103 4.56200 4.58647 4.60752 4.67440 4.80843 4.85613 4.87913 4.89632 5.02003 5.14012 5.19662 5.22429 5.33892 5.45341 5.53638 5.77595 5.95774 6.36943 6.48027 6.61065 6.71138 7.05876 7.59113 9.09266 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.010963 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.542670 B = 2553.430421 C = 3005.805533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.402 6.402 3 C 0.073 3.927 4 C 0.063 3.937 5 N -0.497 5.497 6 C 0.098 3.902 7 H 0.062 0.938 8 C -0.171 4.171 9 C 0.039 3.961 10 C -0.480 4.480 11 H 0.049 0.951 12 C -0.003 4.003 13 N -0.942 5.942 14 Si 0.950 3.050 15 H -0.270 1.270 16 H -0.288 1.288 17 H -0.276 1.276 18 C -0.001 4.001 19 C -0.158 4.158 20 C -0.171 4.171 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.067 0.933 31 H -0.013 1.013 32 H -0.005 1.005 33 H 0.255 0.745 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.052 13.801 -5.716 15.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.321 6.321 3 C -0.004 4.004 4 C -0.065 4.065 5 N -0.221 5.221 6 C -0.009 4.009 7 H 0.080 0.920 8 C -0.230 4.230 9 C 0.002 3.998 10 C -0.519 4.519 11 H 0.067 0.933 12 C -0.198 4.198 13 N -0.585 5.585 14 Si 0.777 3.223 15 H -0.196 1.196 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.110 4.110 19 C -0.195 4.195 20 C -0.208 4.208 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.091 0.909 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.005 0.995 32 H 0.013 0.987 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.254 13.109 -5.689 15.225 hybrid contribution -0.082 -0.383 0.282 0.483 sum -5.336 12.726 -5.406 14.821 Atomic orbital electron populations 1.22790 0.81119 1.02415 1.00482 1.88188 1.19974 1.28630 1.95301 1.22575 0.93176 0.84468 1.00169 1.22065 0.94262 0.97567 0.92619 1.61669 1.23799 1.33427 1.03163 1.21585 0.86642 0.94032 0.98687 0.91959 1.22406 1.00204 0.99390 1.00965 1.19025 0.94115 0.92452 0.94241 1.21282 1.29205 1.00023 1.01365 0.93279 1.25731 0.97691 1.00923 0.95482 1.70079 1.48077 1.27008 1.13323 0.85728 0.79662 0.78690 0.78239 1.19570 1.21346 1.20181 1.22537 1.04985 0.95041 0.88401 1.23009 0.91271 1.03060 1.02189 1.22971 0.99884 1.01405 0.96573 0.93077 0.93142 0.90898 0.92249 0.92279 0.91628 0.92851 0.92995 0.92713 0.91426 0.99473 0.98675 0.93586 0.88467 0.90754 0.86569 0.86581 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -16.15 10.65 -148.98 -1.59 -17.74 16 3 C 0.07 2.33 6.13 71.98 0.44 2.77 16 4 C 0.06 2.22 3.89 86.30 0.34 2.56 16 5 N -0.50 -19.02 4.10 -845.90 -3.47 -22.49 16 6 C 0.10 4.11 2.21 44.92 0.10 4.21 16 7 H 0.06 2.66 6.97 -2.39 -0.02 2.64 16 8 C -0.17 -5.74 8.47 71.98 0.61 -5.13 16 9 C 0.04 2.10 4.43 29.85 0.13 2.23 16 10 C -0.48 -28.53 8.79 25.60 0.22 -28.30 16 11 H 0.05 2.92 7.75 -2.91 -0.02 2.90 16 12 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 13 N -0.94 -60.15 13.29 21.45 0.28 -59.87 16 14 Si 0.95 47.96 29.54 68.60 2.03 49.99 16 15 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 16 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 17 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 18 C 0.00 -0.03 3.87 44.92 0.17 0.14 16 19 C -0.16 -4.26 9.83 30.60 0.30 -3.95 16 20 C -0.17 -4.80 9.64 30.59 0.30 -4.50 16 21 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 25 H 0.06 1.66 7.01 -2.39 -0.02 1.64 16 26 H 0.07 1.89 7.20 -2.39 -0.02 1.88 16 27 H 0.05 2.30 5.97 -2.39 -0.01 2.28 16 28 H 0.05 1.73 6.62 -2.39 -0.02 1.71 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 1.88 7.58 -2.39 -0.02 1.86 16 31 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 32 H -0.01 -0.30 6.37 -2.39 -0.02 -0.31 16 33 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 34 H 0.10 2.44 7.86 -2.39 -0.02 2.42 16 35 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.12 2.52 8.14 -2.38 -0.02 2.51 16 38 H 0.07 2.49 7.75 -2.39 -0.02 2.48 16 Total: -1.00 -70.37 305.30 2.58 -67.79 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.00 Total: 9.92 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 4.32 Total: -27.61 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -3.18 Total: -82.35 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -1.59 Total: -17.74 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -70.37 2.58 -67.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.702 kcal (2) G-P(sol) polarization free energy of solvation -70.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds