Wall clock time and date at job start Mon Mar 30 2020 03:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47195 * 2 1 4 4 C 1.53000 * 109.47151 * 240.00062 * 2 1 3 5 5 C 1.50700 * 109.46991 * 175.00199 * 4 2 1 6 6 H 1.07988 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99316 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99329 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00453 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47221 * 89.99798 * 9 7 5 11 11 H 1.48507 * 109.46987 * 209.99952 * 9 7 5 12 12 H 1.48501 * 109.47001 * 329.99449 * 9 7 5 13 13 N 1.46902 * 109.47177 * 119.99709 * 2 1 3 14 14 C 1.46898 * 111.00173 * 275.00364 * 13 2 1 15 15 H 1.09002 * 110.56429 * 32.31262 * 14 13 2 16 16 C 1.54519 * 110.50883 * 269.64307 * 14 13 2 17 17 C 1.54478 * 104.05985 * 241.35688 * 16 14 13 18 18 H 1.08998 * 110.37402 * 94.85088 * 17 16 14 19 19 C 1.52998 * 110.36849 * 217.18864 * 17 16 14 20 20 O 1.44430 * 104.80307 * 336.01715 * 17 16 14 21 21 C 1.44421 * 105.27575 * 40.51404 * 20 17 16 22 22 H 1.09005 * 110.37227 * 78.42543 * 21 20 17 23 23 C 1.52997 * 110.37501 * 200.65650 * 21 20 17 24 24 H 1.08995 * 109.46950 * 59.99796 * 1 2 3 25 25 H 1.08999 * 109.47195 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47177 * 300.00602 * 1 2 3 27 27 H 1.09006 * 109.46821 * 295.00222 * 4 2 1 28 28 H 1.09000 * 109.47075 * 54.99746 * 4 2 1 29 29 H 0.97001 * 119.99957 * 179.97438 * 8 7 5 30 30 H 1.00895 * 111.00130 * 151.04186 * 13 2 1 31 31 H 1.08993 * 110.51341 * 122.70942 * 16 14 13 32 32 H 1.08997 * 110.62388 * 0.05581 * 16 14 13 33 33 H 1.08999 * 109.47434 * 176.83247 * 19 17 16 34 34 H 1.08999 * 109.47577 * 296.83155 * 19 17 16 35 35 H 1.08998 * 109.47549 * 56.83455 * 19 17 16 36 36 H 1.09002 * 109.47153 * 58.54601 * 23 21 20 37 37 H 1.09001 * 109.46832 * 298.54792 * 23 21 20 38 38 H 1.09004 * 109.47261 * 178.54773 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0856 -0.5396 7 6 4.2304 -1.1936 -2.3578 8 7 5.5410 -1.1004 -2.4134 9 14 3.3015 -2.1086 -3.6954 10 1 2.9408 -1.1637 -4.7827 11 1 4.1599 -3.1895 -4.2433 12 1 2.0654 -2.7003 -3.1234 13 7 2.0197 -0.6924 1.1995 14 6 2.0824 0.2226 2.3469 15 1 1.2926 0.9711 2.2833 16 6 3.4679 0.9027 2.4219 17 6 4.0365 0.4469 3.7839 18 1 4.6704 -0.4305 3.6560 19 6 4.8237 1.5833 4.4395 20 8 2.8753 0.1170 4.5768 21 6 1.9780 -0.5634 3.6726 22 1 2.2951 -1.5964 3.5291 23 6 0.5455 -0.5166 4.2081 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.7516 -1.7715 -1.2056 28 1 1.6054 -0.2617 -2.1370 29 1 6.0255 -1.5078 -3.1485 30 1 2.9173 -1.1205 1.0288 31 1 3.3629 1.9873 2.3954 32 1 4.1074 0.5620 1.6077 33 1 5.1702 1.2652 5.4228 34 1 5.6814 1.8377 3.8169 35 1 4.1804 2.4567 4.5461 36 1 0.2380 0.5217 4.3328 37 1 0.5005 -1.0270 5.1702 38 1 -0.1224 -1.0112 3.5028 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179527.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:15 Heat of formation + Delta-G solvation = -66.458418 kcal Electronic energy + Delta-G solvation = -16640.424788 eV Core-core repulsion = 14095.973728 eV Total energy + Delta-G solvation = -2544.451060 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.59035 -36.36882 -32.93747 -32.47809 -31.69395 -29.29287 -27.97761 -27.14870 -23.48993 -22.50302 -21.25313 -20.27731 -19.38813 -16.84867 -16.16848 -15.67172 -15.21316 -14.48542 -14.36912 -13.93174 -13.34710 -12.84446 -12.72539 -12.47124 -12.36225 -12.03895 -11.84826 -11.74933 -11.66692 -11.53042 -11.31108 -10.96095 -10.78650 -10.55857 -10.42905 -10.24568 -9.80131 -9.53457 -9.45068 -9.21971 -8.60084 -7.73533 -6.11265 -4.09956 3.27714 3.35870 3.40367 4.05252 4.40660 4.67043 4.89270 5.02674 5.23230 5.26574 5.37897 5.45864 5.51797 5.68777 5.71855 5.77440 5.80613 5.92762 5.99440 6.08126 6.12585 6.16991 6.27703 6.30150 6.32724 6.40733 6.45326 6.67506 6.75335 7.04977 7.17268 7.29031 7.71694 7.86107 8.16561 8.43347 8.90221 9.51606 11.01474 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028709 B = 0.007633 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.070534 B = 3667.339466 C = 4345.063949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.097 3.903 3 H 0.036 0.964 4 C -0.018 4.018 5 C -0.525 4.525 6 H 0.070 0.930 7 C 0.069 3.931 8 N -0.901 5.901 9 Si 0.881 3.119 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.674 5.674 14 C 0.064 3.936 15 H 0.082 0.918 16 C -0.183 4.183 17 C 0.073 3.927 18 H 0.068 0.932 19 C -0.144 4.144 20 O -0.378 6.378 21 C 0.079 3.921 22 H 0.074 0.926 23 C -0.137 4.137 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.026 0.974 28 H 0.017 0.983 29 H 0.263 0.737 30 H 0.360 0.640 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.588 2.755 10.402 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.012 4.012 3 H 0.054 0.946 4 C -0.055 4.055 5 C -0.563 4.563 6 H 0.088 0.912 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.708 3.292 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.308 5.308 14 C -0.048 4.048 15 H 0.100 0.900 16 C -0.222 4.222 17 C 0.015 3.985 18 H 0.086 0.914 19 C -0.201 4.201 20 O -0.298 6.298 21 C 0.021 3.979 22 H 0.092 0.908 23 C -0.194 4.194 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.182 0.818 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.080 2.492 10.676 13.051 hybrid contribution 0.576 0.073 -1.307 1.430 sum -6.505 2.565 9.369 11.690 Atomic orbital electron populations 1.21849 0.96623 1.01397 0.99800 1.21386 0.93172 0.96127 0.90562 0.94625 1.19774 0.97010 0.96271 0.92471 1.21081 0.89864 1.35329 1.09981 0.91212 1.25009 0.94695 0.95658 0.97879 1.69912 1.06590 1.45134 1.32311 0.86762 0.80311 0.79898 0.82218 1.20419 1.21452 1.18859 1.60569 1.35137 1.31117 1.04000 1.22946 0.95800 0.93890 0.92143 0.90018 1.23776 0.98524 1.01651 0.98281 1.22875 0.88114 0.97333 0.90182 0.91433 1.21784 0.99734 0.97681 1.00876 1.89075 1.29125 1.77485 1.34114 1.22944 0.90615 0.96304 0.88054 0.90849 1.21711 0.94496 1.02107 1.01122 0.93304 0.92609 0.94086 0.95621 0.96501 0.92706 0.81791 0.91140 0.89266 0.92260 0.91198 0.92144 0.92548 0.92533 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.40 37.16 0.35 -1.93 16 2 C 0.10 1.88 2.46 -67.71 -0.17 1.72 16 3 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 4 C -0.02 -0.41 3.64 -27.88 -0.10 -0.51 16 5 C -0.52 -14.14 8.67 -34.44 -0.30 -14.43 16 6 H 0.07 1.99 7.14 -52.49 -0.37 1.62 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 9 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 13 N -0.67 -12.32 6.09 -98.10 -0.60 -12.92 16 14 C 0.06 1.02 2.73 -66.14 -0.18 0.84 16 15 H 0.08 1.29 6.93 -51.93 -0.36 0.93 16 16 C -0.18 -2.93 6.29 -25.16 -0.16 -3.09 16 17 C 0.07 1.08 3.92 -25.96 -0.10 0.98 16 18 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 19 C -0.14 -1.79 9.52 37.16 0.35 -1.43 16 20 O -0.38 -5.97 11.04 -35.23 -0.39 -6.36 16 21 C 0.08 1.18 3.64 -25.96 -0.09 1.09 16 22 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 23 C -0.14 -1.75 9.52 37.16 0.35 -1.39 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.61 7.50 -51.93 -0.39 0.22 16 27 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 28 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.36 7.34 6.62 -39.29 -0.26 7.08 16 31 H 0.07 1.07 7.86 -51.93 -0.41 0.66 16 32 H 0.09 1.64 7.01 -51.93 -0.36 1.27 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 36 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 299.90 15.07 4.52 4.52 Total: -1.00 -28.48 299.90 -7.23 -35.70 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.72 Total: 4.83 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -0.14 Total: -16.31 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.18 Total: -39.08 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.39 Total: -6.36 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.48 -7.23 -35.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179527.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.755 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds