Wall clock time and date at job start Mon Mar 30 2020 03:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47195 * 2 1 4 4 C 1.53000 * 109.47151 * 240.00062 * 2 1 3 5 5 C 1.50700 * 109.46991 * 175.00199 * 4 2 1 6 6 H 1.07988 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99316 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99329 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00453 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47221 * 89.99798 * 9 7 5 11 11 H 1.48507 * 109.46987 * 209.99952 * 9 7 5 12 12 H 1.48501 * 109.47001 * 329.99449 * 9 7 5 13 13 N 1.46902 * 109.47177 * 119.99709 * 2 1 3 14 14 C 1.46898 * 111.00173 * 275.00364 * 13 2 1 15 15 H 1.09002 * 110.56429 * 32.31262 * 14 13 2 16 16 C 1.54519 * 110.50883 * 269.64307 * 14 13 2 17 17 C 1.54478 * 104.05985 * 241.35688 * 16 14 13 18 18 H 1.08998 * 110.37402 * 94.85088 * 17 16 14 19 19 C 1.52998 * 110.36849 * 217.18864 * 17 16 14 20 20 O 1.44430 * 104.80307 * 336.01715 * 17 16 14 21 21 C 1.44421 * 105.27575 * 40.51404 * 20 17 16 22 22 H 1.09005 * 110.37227 * 78.42543 * 21 20 17 23 23 C 1.52997 * 110.37501 * 200.65650 * 21 20 17 24 24 H 1.08995 * 109.46950 * 59.99796 * 1 2 3 25 25 H 1.08999 * 109.47195 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47177 * 300.00602 * 1 2 3 27 27 H 1.09006 * 109.46821 * 295.00222 * 4 2 1 28 28 H 1.09000 * 109.47075 * 54.99746 * 4 2 1 29 29 H 0.97001 * 119.99957 * 179.97438 * 8 7 5 30 30 H 1.00895 * 111.00130 * 151.04186 * 13 2 1 31 31 H 1.08993 * 110.51341 * 122.70942 * 16 14 13 32 32 H 1.08997 * 110.62388 * 0.05581 * 16 14 13 33 33 H 1.08999 * 109.47434 * 176.83247 * 19 17 16 34 34 H 1.08999 * 109.47577 * 296.83155 * 19 17 16 35 35 H 1.08998 * 109.47549 * 56.83455 * 19 17 16 36 36 H 1.09002 * 109.47153 * 58.54601 * 23 21 20 37 37 H 1.09001 * 109.46832 * 298.54792 * 23 21 20 38 38 H 1.09004 * 109.47261 * 178.54773 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0856 -0.5396 7 6 4.2304 -1.1936 -2.3578 8 7 5.5410 -1.1004 -2.4134 9 14 3.3015 -2.1086 -3.6954 10 1 2.9408 -1.1637 -4.7827 11 1 4.1599 -3.1895 -4.2433 12 1 2.0654 -2.7003 -3.1234 13 7 2.0197 -0.6924 1.1995 14 6 2.0824 0.2226 2.3469 15 1 1.2926 0.9711 2.2833 16 6 3.4679 0.9027 2.4219 17 6 4.0365 0.4469 3.7839 18 1 4.6704 -0.4305 3.6560 19 6 4.8237 1.5833 4.4395 20 8 2.8753 0.1170 4.5768 21 6 1.9780 -0.5634 3.6726 22 1 2.2951 -1.5964 3.5291 23 6 0.5455 -0.5166 4.2081 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.7516 -1.7715 -1.2056 28 1 1.6054 -0.2617 -2.1370 29 1 6.0255 -1.5078 -3.1485 30 1 2.9173 -1.1205 1.0288 31 1 3.3629 1.9873 2.3954 32 1 4.1074 0.5620 1.6077 33 1 5.1702 1.2652 5.4228 34 1 5.6814 1.8377 3.8169 35 1 4.1804 2.4567 4.5461 36 1 0.2380 0.5217 4.3328 37 1 0.5005 -1.0270 5.1702 38 1 -0.1224 -1.0112 3.5028 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179527.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:15 Heat of formation + Delta-G solvation = -85.104217 kcal Electronic energy + Delta-G solvation = -16641.233331 eV Core-core repulsion = 14095.973728 eV Total energy + Delta-G solvation = -2545.259602 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.86309 -37.89800 -34.83786 -33.66259 -33.27667 -30.54980 -29.73237 -28.42496 -24.95870 -24.12374 -22.48344 -21.58409 -20.97784 -18.94708 -17.49971 -17.01540 -16.51506 -16.28676 -15.82333 -15.38942 -14.71699 -14.51243 -13.98089 -13.86589 -13.78216 -13.58549 -13.30820 -12.99347 -12.88611 -12.76949 -12.71278 -12.48387 -12.23307 -11.99534 -11.94235 -11.69958 -11.54434 -11.22252 -11.19715 -10.76040 -10.71119 -9.21564 -8.28189 -6.30933 1.35873 1.38589 1.49899 2.36773 2.85131 3.05588 3.32225 3.65278 3.81468 3.98141 4.13187 4.24225 4.29171 4.40207 4.50514 4.53596 4.63609 4.67874 4.71383 4.83255 4.86331 4.99125 5.04932 5.09563 5.13463 5.16035 5.21395 5.23628 5.31573 5.37555 5.50900 5.68368 5.88847 6.25615 6.36983 6.53923 6.75835 7.33595 8.87478 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028709 B = 0.007633 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.070534 B = 3667.339466 C = 4345.063949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.100 3.900 3 H 0.022 0.978 4 C -0.014 4.014 5 C -0.522 4.522 6 H 0.038 0.962 7 C 0.008 3.992 8 N -0.948 5.948 9 Si 0.946 3.054 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.248 1.248 13 N -0.671 5.671 14 C 0.065 3.935 15 H 0.091 0.909 16 C -0.180 4.180 17 C 0.071 3.929 18 H 0.060 0.940 19 C -0.139 4.139 20 O -0.383 6.383 21 C 0.079 3.921 22 H 0.064 0.936 23 C -0.131 4.131 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.024 0.976 28 H 0.022 0.978 29 H 0.264 0.736 30 H 0.343 0.657 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.679 2.786 10.846 14.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.010 4.010 3 H 0.040 0.960 4 C -0.052 4.052 5 C -0.560 4.560 6 H 0.056 0.944 7 C -0.189 4.189 8 N -0.589 5.589 9 Si 0.770 3.230 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.172 1.172 13 N -0.303 5.303 14 C -0.046 4.046 15 H 0.109 0.891 16 C -0.219 4.219 17 C 0.014 3.986 18 H 0.078 0.922 19 C -0.196 4.196 20 O -0.303 6.303 21 C 0.021 3.979 22 H 0.082 0.918 23 C -0.189 4.189 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.163 0.837 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.201 2.535 11.138 14.667 hybrid contribution 1.288 0.105 -1.384 1.893 sum -7.913 2.641 9.754 12.835 Atomic orbital electron populations 1.21763 0.93601 1.02073 1.01377 1.21332 0.95440 0.94758 0.89473 0.96005 1.19728 0.94219 0.96646 0.94605 1.21374 0.92046 1.33908 1.08709 0.94365 1.25909 0.95457 0.96908 1.00591 1.70058 1.08420 1.46922 1.33482 0.85722 0.79386 0.78638 0.79245 1.19553 1.21425 1.17162 1.60658 1.33963 1.31494 1.04230 1.23016 0.95879 0.93865 0.91860 0.89112 1.23691 0.98224 1.02029 0.98000 1.22928 0.88075 0.97961 0.89682 0.92228 1.21769 0.99662 0.96843 1.01333 1.89074 1.29358 1.77497 1.34373 1.22984 0.92009 0.95452 0.87455 0.91844 1.21691 0.92614 1.02848 1.01701 0.92202 0.92335 0.92116 0.95773 0.95999 0.92704 0.83655 0.90373 0.92442 0.91105 0.90597 0.91542 0.91833 0.91458 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.40 71.98 0.68 -3.24 16 2 C 0.10 3.77 2.46 44.92 0.11 3.88 16 3 H 0.02 0.88 7.86 -2.39 -0.02 0.86 16 4 C -0.01 -0.65 3.64 29.85 0.11 -0.54 16 5 C -0.52 -28.69 8.67 25.60 0.22 -28.47 16 6 H 0.04 2.29 7.14 -2.92 -0.02 2.27 16 7 C 0.01 0.48 5.47 84.66 0.46 0.94 16 8 N -0.95 -58.20 13.96 21.45 0.30 -57.90 16 9 Si 0.95 43.83 27.47 68.60 1.88 45.71 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 13 N -0.67 -24.33 6.09 -464.27 -2.83 -27.15 16 14 C 0.06 2.03 2.73 45.93 0.13 2.16 16 15 H 0.09 2.69 6.93 -2.39 -0.02 2.68 16 16 C -0.18 -5.83 6.29 31.61 0.20 -5.63 16 17 C 0.07 2.09 3.92 31.10 0.12 2.21 16 18 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 19 C -0.14 -3.30 9.52 71.98 0.69 -2.61 16 20 O -0.38 -11.62 11.04 -148.98 -1.64 -13.26 16 21 C 0.08 2.27 3.64 31.10 0.11 2.39 16 22 H 0.06 1.95 8.06 -2.38 -0.02 1.93 16 23 C -0.13 -3.02 9.52 71.98 0.69 -2.33 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.59 7.50 -2.39 -0.02 1.57 16 27 H 0.02 1.10 7.20 -2.38 -0.02 1.09 16 28 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 29 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.34 14.42 6.62 -89.70 -0.59 13.82 16 31 H 0.08 2.36 7.86 -2.39 -0.02 2.34 16 32 H 0.06 2.23 7.01 -2.39 -0.02 2.21 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 36 H 0.06 1.37 8.12 -2.39 -0.02 1.35 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -60.97 299.90 1.58 -59.39 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.36 Total: 24.46 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 3.51 Total: -31.24 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -2.53 Total: -85.06 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -1.64 Total: -13.26 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.71 kcal Total: -60.97 1.58 -59.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179527.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.717 kcal (2) G-P(sol) polarization free energy of solvation -60.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds