Wall clock time and date at job start Mon Mar 30 2020 03:12:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08998 * 109.47566 * 2 1
4 4 C 1.53005 * 109.47532 * 240.00148 * 2 1 3
5 5 C 1.50702 * 109.47245 * 175.00147 * 4 2 1
6 6 H 1.08000 * 119.99745 * 0.02562 * 5 4 2
7 7 C 1.37877 * 119.99707 * 179.97438 * 5 4 2
8 8 N 1.31511 * 119.99755 * 179.97438 * 7 5 4
9 9 Si 1.86802 * 120.00103 * 0.02562 * 7 5 4
10 10 H 1.48498 * 109.47411 * 89.99904 * 9 7 5
11 11 H 1.48499 * 109.46924 * 210.00164 * 9 7 5
12 12 H 1.48500 * 109.46892 * 329.99474 * 9 7 5
13 13 N 1.46903 * 109.47033 * 120.00016 * 2 1 3
14 14 C 1.46896 * 110.99925 * 275.00118 * 13 2 1
15 15 H 1.08996 * 110.43835 * 41.75548 * 14 13 2
16 16 C 1.54816 * 110.48982 * 279.20636 * 14 13 2
17 17 C 1.55218 * 101.98723 * 220.52130 * 16 14 13
18 18 H 1.09004 * 110.64311 * 155.43897 * 17 16 14
19 19 C 1.52999 * 110.65550 * 278.31811 * 17 16 14
20 20 O 1.44379 * 103.57133 * 36.88275 * 17 16 14
21 21 C 1.43751 * 106.97082 * 320.01187 * 20 17 16
22 22 H 1.09000 * 109.99823 * 267.01461 * 21 20 17
23 23 C 1.52993 * 109.87656 * 145.93686 * 21 20 17
24 24 H 1.09007 * 109.47098 * 179.97438 * 1 2 3
25 25 H 1.09002 * 109.47006 * 59.99767 * 1 2 3
26 26 H 1.08994 * 109.47456 * 299.99861 * 1 2 3
27 27 H 1.09002 * 109.46931 * 294.99901 * 4 2 1
28 28 H 1.08995 * 109.46999 * 55.00047 * 4 2 1
29 29 H 0.97002 * 120.00257 * 179.97438 * 8 7 5
30 30 H 1.00903 * 110.99954 * 38.95573 * 13 2 1
31 31 H 1.09000 * 110.90199 * 338.64605 * 16 14 13
32 32 H 1.09002 * 110.90654 * 102.24719 * 16 14 13
33 33 H 1.09001 * 109.47129 * 175.63974 * 19 17 16
34 34 H 1.09000 * 109.47354 * 295.64130 * 19 17 16
35 35 H 1.09001 * 109.47209 * 55.64052 * 19 17 16
36 36 H 1.09001 * 109.47251 * 296.32248 * 23 21 20
37 37 H 1.09004 * 109.47530 * 56.32722 * 23 21 20
38 38 H 1.08999 * 109.47183 * 176.32171 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7212 -1.2493
5 6 3.5420 -0.6149 -1.3127
6 1 4.0790 -0.0862 -0.5391
7 6 4.2305 -1.1935 -2.3577
8 7 5.5411 -1.1002 -2.4133
9 14 3.3016 -2.1086 -3.6954
10 1 2.9410 -1.1637 -4.7827
11 1 4.1600 -3.1894 -4.2432
12 1 2.0655 -2.7003 -3.1234
13 7 2.0196 -0.6925 1.1995
14 6 2.0823 0.2225 2.3469
15 1 1.2002 0.8623 2.3722
16 6 3.3710 1.0785 2.2876
17 6 3.8129 1.0994 3.7754
18 1 4.8856 1.2757 3.8552
19 6 3.0346 2.1614 4.5547
20 8 3.4788 -0.2238 4.2466
21 6 2.2119 -0.5699 3.6622
22 1 1.4022 -0.2985 4.3397
23 6 2.1657 -2.0713 3.3718
24 1 -0.3634 -1.0277 -0.0005
25 1 -0.3633 0.5139 -0.8900
26 1 -0.3634 0.5138 0.8899
27 1 1.7517 -1.7715 -1.2056
28 1 1.6055 -0.2617 -2.1370
29 1 6.0257 -1.5076 -3.1483
30 1 1.4495 -1.4980 1.4100
31 1 4.1268 0.6008 1.6642
32 1 3.1533 2.0850 1.9301
33 1 3.3031 2.1073 5.6097
34 1 3.2812 3.1499 4.1672
35 1 1.9651 1.9835 4.4424
36 1 2.9229 -2.3210 2.6285
37 1 2.3613 -2.6252 4.2900
38 1 1.1801 -2.3374 2.9899
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000829179528.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:17
Heat of formation + Delta-G solvation = -51.381237 kcal
Electronic energy + Delta-G solvation = -16829.358338 eV
Core-core repulsion = 14285.561074 eV
Total energy + Delta-G solvation = -2543.797264 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.78358 -36.46575 -32.96811 -32.23021 -31.65231 -28.82366 -27.91602 -27.16735
-24.39021 -22.72849 -20.87097 -19.79409 -19.39364 -16.58119 -16.06076 -15.99520
-15.16552 -14.75803 -14.19584 -14.05443 -13.25697 -12.96330 -12.57441 -12.44472
-12.35711 -12.20682 -11.84723 -11.75518 -11.72154 -11.48574 -11.21198 -10.77360
-10.50970 -10.49635 -10.44393 -10.19583 -9.67667 -9.55510 -9.42718 -8.98930
-8.39580 -7.63260 -5.87969 -3.81531 3.37408 3.45451 3.48244 4.05977
4.57077 4.62862 4.85302 5.00863 5.22034 5.28334 5.42081 5.44162
5.48942 5.60012 5.64068 5.69581 5.74011 5.79039 5.88796 5.92248
6.04581 6.18527 6.23617 6.26816 6.36250 6.47453 6.61369 6.72460
6.82562 7.15870 7.20939 7.36056 7.82321 7.93603 8.08825 8.75438
9.23588 9.75303 11.26034
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.030524 B = 0.007633 C = 0.007096
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 917.085323 B = 3667.608604 C = 3944.950336
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.096 3.904
3 H 0.069 0.931
4 C -0.004 4.004
5 C -0.487 4.487
6 H 0.078 0.922
7 C 0.060 3.940
8 N -0.909 5.909
9 Si 0.874 3.126
10 H -0.281 1.281
11 H -0.291 1.291
12 H -0.269 1.269
13 N -0.652 5.652
14 C 0.060 3.940
15 H 0.042 0.958
16 C -0.138 4.138
17 C 0.070 3.930
18 H 0.100 0.900
19 C -0.170 4.170
20 O -0.366 6.366
21 C 0.078 3.922
22 H 0.057 0.943
23 C -0.153 4.153
24 H 0.050 0.950
25 H 0.056 0.944
26 H 0.040 0.960
27 H 0.015 0.985
28 H 0.011 0.989
29 H 0.259 0.741
30 H 0.334 0.666
31 H 0.102 0.898
32 H 0.070 0.930
33 H 0.059 0.941
34 H 0.065 0.935
35 H 0.055 0.945
36 H 0.087 0.913
37 H 0.055 0.945
38 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.941 3.549 11.374 14.896
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C -0.014 4.014
3 H 0.088 0.912
4 C -0.041 4.041
5 C -0.526 4.526
6 H 0.096 0.904
7 C -0.139 4.139
8 N -0.549 5.549
9 Si 0.702 3.298
10 H -0.207 1.207
11 H -0.217 1.217
12 H -0.193 1.193
13 N -0.285 5.285
14 C -0.050 4.050
15 H 0.060 0.940
16 C -0.176 4.176
17 C 0.012 3.988
18 H 0.117 0.883
19 C -0.228 4.228
20 O -0.286 6.286
21 C 0.020 3.980
22 H 0.075 0.925
23 C -0.210 4.210
24 H 0.069 0.931
25 H 0.076 0.924
26 H 0.059 0.941
27 H 0.033 0.967
28 H 0.029 0.971
29 H 0.069 0.931
30 H 0.156 0.844
31 H 0.120 0.880
32 H 0.089 0.911
33 H 0.078 0.922
34 H 0.084 0.916
35 H 0.074 0.926
36 H 0.106 0.894
37 H 0.074 0.926
38 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -8.013 3.429 11.244 14.227
hybrid contribution -1.559 -0.225 -0.757 1.748
sum -9.572 3.205 10.487 14.556
Atomic orbital electron populations
1.22601 0.99581 1.01197 1.00864 1.21594 0.89578 0.98421 0.91776
0.91225 1.19593 0.97888 0.95341 0.91301 1.21039 0.89457 1.33653
1.08402 0.90437 1.25013 0.94679 0.96339 0.97894 1.69911 1.06405
1.46290 1.32330 0.86881 0.80203 0.80018 0.82663 1.20741 1.21692
1.19348 1.60791 1.57683 1.08168 1.01863 1.22793 0.97100 0.94054
0.91100 0.93996 1.23288 0.98518 0.99832 0.95941 1.23150 0.99720
0.83057 0.92869 0.88260 1.22250 1.00795 0.99043 1.00693 1.88904
1.37253 1.32175 1.70234 1.22704 0.86568 0.96137 0.92606 0.92535
1.21873 1.02769 0.93841 1.02562 0.93055 0.92448 0.94126 0.96658
0.97088 0.93136 0.84437 0.87981 0.91132 0.92232 0.91643 0.92623
0.89366 0.92607 0.91990
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.83 9.15 37.15 0.34 -2.49 16
2 C 0.10 1.82 2.40 -67.71 -0.16 1.66 16
3 H 0.07 1.38 7.52 -51.93 -0.39 0.99 16
4 C 0.00 -0.08 3.72 -27.88 -0.10 -0.19 16
5 C -0.49 -13.73 9.39 -34.44 -0.32 -14.05 16
6 H 0.08 2.36 7.64 -52.49 -0.40 1.96 16
7 C 0.06 1.76 5.47 -17.82 -0.10 1.67 16
8 N -0.91 -28.41 13.96 55.43 0.77 -27.63 16
9 Si 0.87 22.04 27.47 -169.99 -4.67 17.37 16
10 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16
11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16
12 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16
13 N -0.65 -11.71 4.81 -98.14 -0.47 -12.18 16
14 C 0.06 0.94 2.76 -66.18 -0.18 0.76 16
15 H 0.04 0.61 7.23 -51.93 -0.38 0.24 16
16 C -0.14 -2.23 5.89 -24.60 -0.14 -2.37 16
17 C 0.07 1.00 4.29 -25.56 -0.11 0.89 16
18 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16
19 C -0.17 -1.94 9.40 37.16 0.35 -1.60 16
20 O -0.37 -5.95 10.95 -35.23 -0.39 -6.34 16
21 C 0.08 1.14 3.46 -26.16 -0.09 1.05 16
22 H 0.06 0.73 8.06 -51.93 -0.42 0.32 16
23 C -0.15 -2.15 8.27 37.15 0.31 -1.85 16
24 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16
25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
26 H 0.04 0.55 7.40 -51.93 -0.38 0.17 16
27 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16
28 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16
29 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16
30 H 0.33 5.50 5.82 -39.29 -0.23 5.27 16
31 H 0.10 2.04 7.72 -51.93 -0.40 1.64 16
32 H 0.07 1.06 8.05 -51.93 -0.42 0.64 16
33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
35 H 0.05 0.63 7.30 -51.93 -0.38 0.25 16
36 H 0.09 1.48 7.42 -51.93 -0.39 1.09 16
37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16
38 H 0.06 0.75 7.13 -51.93 -0.37 0.38 16
LS Contribution 295.34 15.07 4.45 4.45
Total: -1.00 -30.81 295.34 -7.14 -37.95
By element:
Atomic # 1 Polarization: 9.53 SS G_CDS: -6.62 Total: 2.91 kcal
Atomic # 6 Polarization: -16.31 SS G_CDS: -0.22 Total: -16.53 kcal
Atomic # 7 Polarization: -40.11 SS G_CDS: 0.30 Total: -39.81 kcal
Atomic # 8 Polarization: -5.95 SS G_CDS: -0.39 Total: -6.34 kcal
Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal
Total LS contribution 4.45 Total: 4.45 kcal
Total: -30.81 -7.14 -37.95 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000829179528.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.433 kcal
(2) G-P(sol) polarization free energy of solvation -30.807 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.239 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.381 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds