Wall clock time and date at job start Mon Mar 30 2020 03:12:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08998 * 109.47566 * 2 1
4 4 C 1.53005 * 109.47532 * 240.00148 * 2 1 3
5 5 C 1.50702 * 109.47245 * 175.00147 * 4 2 1
6 6 H 1.08000 * 119.99745 * 0.02562 * 5 4 2
7 7 C 1.37877 * 119.99707 * 179.97438 * 5 4 2
8 8 N 1.31511 * 119.99755 * 179.97438 * 7 5 4
9 9 Si 1.86802 * 120.00103 * 0.02562 * 7 5 4
10 10 H 1.48498 * 109.47411 * 89.99904 * 9 7 5
11 11 H 1.48499 * 109.46924 * 210.00164 * 9 7 5
12 12 H 1.48500 * 109.46892 * 329.99474 * 9 7 5
13 13 N 1.46903 * 109.47033 * 120.00016 * 2 1 3
14 14 C 1.46896 * 110.99925 * 275.00118 * 13 2 1
15 15 H 1.08996 * 110.43835 * 41.75548 * 14 13 2
16 16 C 1.54816 * 110.48982 * 279.20636 * 14 13 2
17 17 C 1.55218 * 101.98723 * 220.52130 * 16 14 13
18 18 H 1.09004 * 110.64311 * 155.43897 * 17 16 14
19 19 C 1.52999 * 110.65550 * 278.31811 * 17 16 14
20 20 O 1.44379 * 103.57133 * 36.88275 * 17 16 14
21 21 C 1.43751 * 106.97082 * 320.01187 * 20 17 16
22 22 H 1.09000 * 109.99823 * 267.01461 * 21 20 17
23 23 C 1.52993 * 109.87656 * 145.93686 * 21 20 17
24 24 H 1.09007 * 109.47098 * 179.97438 * 1 2 3
25 25 H 1.09002 * 109.47006 * 59.99767 * 1 2 3
26 26 H 1.08994 * 109.47456 * 299.99861 * 1 2 3
27 27 H 1.09002 * 109.46931 * 294.99901 * 4 2 1
28 28 H 1.08995 * 109.46999 * 55.00047 * 4 2 1
29 29 H 0.97002 * 120.00257 * 179.97438 * 8 7 5
30 30 H 1.00903 * 110.99954 * 38.95573 * 13 2 1
31 31 H 1.09000 * 110.90199 * 338.64605 * 16 14 13
32 32 H 1.09002 * 110.90654 * 102.24719 * 16 14 13
33 33 H 1.09001 * 109.47129 * 175.63974 * 19 17 16
34 34 H 1.09000 * 109.47354 * 295.64130 * 19 17 16
35 35 H 1.09001 * 109.47209 * 55.64052 * 19 17 16
36 36 H 1.09001 * 109.47251 * 296.32248 * 23 21 20
37 37 H 1.09004 * 109.47530 * 56.32722 * 23 21 20
38 38 H 1.08999 * 109.47183 * 176.32171 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7212 -1.2493
5 6 3.5420 -0.6149 -1.3127
6 1 4.0790 -0.0862 -0.5391
7 6 4.2305 -1.1935 -2.3577
8 7 5.5411 -1.1002 -2.4133
9 14 3.3016 -2.1086 -3.6954
10 1 2.9410 -1.1637 -4.7827
11 1 4.1600 -3.1894 -4.2432
12 1 2.0655 -2.7003 -3.1234
13 7 2.0196 -0.6925 1.1995
14 6 2.0823 0.2225 2.3469
15 1 1.2002 0.8623 2.3722
16 6 3.3710 1.0785 2.2876
17 6 3.8129 1.0994 3.7754
18 1 4.8856 1.2757 3.8552
19 6 3.0346 2.1614 4.5547
20 8 3.4788 -0.2238 4.2466
21 6 2.2119 -0.5699 3.6622
22 1 1.4022 -0.2985 4.3397
23 6 2.1657 -2.0713 3.3718
24 1 -0.3634 -1.0277 -0.0005
25 1 -0.3633 0.5139 -0.8900
26 1 -0.3634 0.5138 0.8899
27 1 1.7517 -1.7715 -1.2056
28 1 1.6055 -0.2617 -2.1370
29 1 6.0257 -1.5076 -3.1483
30 1 1.4495 -1.4980 1.4100
31 1 4.1268 0.6008 1.6642
32 1 3.1533 2.0850 1.9301
33 1 3.3031 2.1073 5.6097
34 1 3.2812 3.1499 4.1672
35 1 1.9651 1.9835 4.4424
36 1 2.9229 -2.3210 2.6285
37 1 2.3613 -2.6252 4.2900
38 1 1.1801 -2.3374 2.9899
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000829179528.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:17
Heat of formation + Delta-G solvation = -72.382189 kcal
Electronic energy + Delta-G solvation = -16830.269008 eV
Core-core repulsion = 14285.561074 eV
Total energy + Delta-G solvation = -2544.707934 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.00124 -37.91733 -34.85078 -33.53263 -33.18282 -30.28898 -29.44337 -28.42533
-25.57596 -24.60157 -22.18435 -21.15714 -20.78819 -18.75592 -17.29763 -17.25961
-16.52810 -16.18938 -15.81834 -15.54553 -14.87612 -14.25908 -14.09414 -13.83821
-13.74650 -13.41610 -13.28894 -13.16718 -12.88306 -12.75038 -12.68114 -12.41874
-12.09953 -11.84782 -11.65282 -11.60417 -11.52348 -11.33438 -11.12179 -10.65629
-10.54523 -8.98708 -8.14716 -6.12980 1.37506 1.40097 1.50882 2.44085
2.91466 3.17231 3.34768 3.64634 3.87296 4.09579 4.14699 4.22263
4.34465 4.42514 4.43343 4.54231 4.56883 4.59155 4.66062 4.87860
4.90906 4.98895 5.07227 5.14917 5.16174 5.18587 5.24851 5.30449
5.36860 5.44007 5.58218 5.79245 6.06077 6.37983 6.54099 6.76871
6.95915 7.47378 9.02726
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.030524 B = 0.007633 C = 0.007096
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 917.085323 B = 3667.608604 C = 3944.950336
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.100 3.900
3 H 0.054 0.946
4 C -0.003 4.003
5 C -0.485 4.485
6 H 0.035 0.965
7 C -0.008 4.008
8 N -0.961 5.961
9 Si 0.946 3.054
10 H -0.271 1.271
11 H -0.292 1.292
12 H -0.248 1.248
13 N -0.675 5.675
14 C 0.064 3.936
15 H 0.065 0.935
16 C -0.139 4.139
17 C 0.070 3.930
18 H 0.096 0.904
19 C -0.160 4.160
20 O -0.390 6.390
21 C 0.077 3.923
22 H 0.086 0.914
23 C -0.150 4.150
24 H 0.060 0.940
25 H 0.062 0.938
26 H 0.064 0.936
27 H 0.016 0.984
28 H 0.017 0.983
29 H 0.259 0.741
30 H 0.343 0.657
31 H 0.049 0.951
32 H 0.079 0.921
33 H 0.069 0.931
34 H 0.078 0.922
35 H 0.062 0.938
36 H 0.052 0.948
37 H 0.065 0.935
38 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.979 3.601 12.052 17.370
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C -0.009 4.009
3 H 0.072 0.928
4 C -0.041 4.041
5 C -0.524 4.524
6 H 0.054 0.946
7 C -0.202 4.202
8 N -0.604 5.604
9 Si 0.771 3.229
10 H -0.196 1.196
11 H -0.219 1.219
12 H -0.172 1.172
13 N -0.310 5.310
14 C -0.046 4.046
15 H 0.082 0.918
16 C -0.178 4.178
17 C 0.013 3.987
18 H 0.114 0.886
19 C -0.218 4.218
20 O -0.309 6.309
21 C 0.019 3.981
22 H 0.104 0.896
23 C -0.207 4.207
24 H 0.079 0.921
25 H 0.081 0.919
26 H 0.083 0.917
27 H 0.034 0.966
28 H 0.036 0.964
29 H 0.068 0.932
30 H 0.166 0.834
31 H 0.068 0.932
32 H 0.097 0.903
33 H 0.088 0.912
34 H 0.097 0.903
35 H 0.081 0.919
36 H 0.071 0.929
37 H 0.084 0.916
38 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -11.079 3.488 11.938 16.656
hybrid contribution -0.520 -0.202 -0.908 1.065
sum -11.599 3.286 11.030 16.340
Atomic orbital electron populations
1.22444 0.95919 1.02331 1.02375 1.21361 0.92348 0.96798 0.90412
0.92776 1.19570 0.94440 0.95982 0.94062 1.21340 0.92171 1.32091
1.06796 0.94639 1.25976 0.95515 0.97766 1.00925 1.70093 1.08502
1.48199 1.33579 0.85726 0.79247 0.78585 0.79363 1.19602 1.21875
1.17185 1.60624 1.58569 1.09212 1.02547 1.22814 0.97131 0.93901
0.90760 0.91764 1.23205 0.97854 0.99979 0.96733 1.23238 1.00283
0.83486 0.91734 0.88603 1.22165 1.00562 0.98324 1.00722 1.88876
1.38351 1.33248 1.70474 1.22859 0.86716 0.96087 0.92389 0.89637
1.21840 1.02898 0.93942 1.02051 0.92084 0.91857 0.91736 0.96610
0.96442 0.93234 0.83436 0.93213 0.90256 0.91169 0.90270 0.91918
0.92874 0.91642 0.89686
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.70 9.15 71.98 0.66 -4.04 16
2 C 0.10 3.72 2.40 44.91 0.11 3.82 16
3 H 0.05 2.14 7.52 -2.39 -0.02 2.13 16
4 C 0.00 -0.13 3.72 29.85 0.11 -0.02 16
5 C -0.49 -28.20 9.39 25.60 0.24 -27.96 16
6 H 0.04 2.30 7.64 -2.91 -0.02 2.28 16
7 C -0.01 -0.45 5.47 84.66 0.46 0.01 16
8 N -0.96 -62.39 13.96 21.45 0.30 -62.09 16
9 Si 0.95 45.62 27.47 68.60 1.88 47.50 16
10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16
11 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16
12 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16
13 N -0.67 -23.87 4.81 -464.41 -2.23 -26.11 16
14 C 0.06 1.92 2.76 45.91 0.13 2.05 16
15 H 0.06 1.66 7.23 -2.39 -0.02 1.64 16
16 C -0.14 -4.62 5.89 31.98 0.19 -4.43 16
17 C 0.07 1.97 4.29 31.35 0.13 2.11 16
18 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16
19 C -0.16 -3.28 9.40 71.98 0.68 -2.60 16
20 O -0.39 -12.39 10.95 -148.98 -1.63 -14.02 16
21 C 0.08 2.11 3.46 30.96 0.11 2.21 16
22 H 0.09 1.89 8.06 -2.39 -0.02 1.87 16
23 C -0.15 -4.02 8.27 71.98 0.60 -3.42 16
24 H 0.06 1.57 8.13 -2.38 -0.02 1.55 16
25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16
26 H 0.06 1.48 7.40 -2.39 -0.02 1.46 16
27 H 0.02 0.72 7.20 -2.39 -0.02 0.71 16
28 H 0.02 0.78 7.57 -2.39 -0.02 0.77 16
29 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16
30 H 0.34 10.75 5.82 -89.69 -0.52 10.23 16
31 H 0.05 2.16 7.72 -2.39 -0.02 2.14 16
32 H 0.08 2.40 8.05 -2.39 -0.02 2.38 16
33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
35 H 0.06 1.20 7.30 -2.39 -0.02 1.18 16
36 H 0.05 1.80 7.42 -2.39 -0.02 1.78 16
37 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16
38 H 0.08 1.85 7.13 -2.39 -0.02 1.83 16
Total: -1.00 -69.16 295.34 2.17 -67.00
By element:
Atomic # 1 Polarization: 19.55 SS G_CDS: 0.44 Total: 19.99 kcal
Atomic # 6 Polarization: -35.68 SS G_CDS: 3.41 Total: -32.27 kcal
Atomic # 7 Polarization: -86.26 SS G_CDS: -1.93 Total: -88.19 kcal
Atomic # 8 Polarization: -12.39 SS G_CDS: -1.63 Total: -14.02 kcal
Atomic # 14 Polarization: 45.62 SS G_CDS: 1.88 Total: 47.50 kcal
Total: -69.16 2.17 -67.00 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000829179528.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.384 kcal
(2) G-P(sol) polarization free energy of solvation -69.164 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.549 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.998 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.382 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds