Wall clock time and date at job start Mon Mar 30 2020 03:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47566 * 2 1 4 4 C 1.53005 * 109.47532 * 240.00148 * 2 1 3 5 5 C 1.50702 * 109.47245 * 175.00147 * 4 2 1 6 6 H 1.08000 * 119.99745 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99707 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99755 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00103 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47411 * 89.99904 * 9 7 5 11 11 H 1.48499 * 109.46924 * 210.00164 * 9 7 5 12 12 H 1.48500 * 109.46892 * 329.99474 * 9 7 5 13 13 N 1.46903 * 109.47033 * 120.00016 * 2 1 3 14 14 C 1.46896 * 110.99925 * 275.00118 * 13 2 1 15 15 H 1.08996 * 110.43835 * 41.75548 * 14 13 2 16 16 C 1.54816 * 110.48982 * 279.20636 * 14 13 2 17 17 C 1.55218 * 101.98723 * 220.52130 * 16 14 13 18 18 H 1.09004 * 110.64311 * 155.43897 * 17 16 14 19 19 C 1.52999 * 110.65550 * 278.31811 * 17 16 14 20 20 O 1.44379 * 103.57133 * 36.88275 * 17 16 14 21 21 C 1.43751 * 106.97082 * 320.01187 * 20 17 16 22 22 H 1.09000 * 109.99823 * 267.01461 * 21 20 17 23 23 C 1.52993 * 109.87656 * 145.93686 * 21 20 17 24 24 H 1.09007 * 109.47098 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47006 * 59.99767 * 1 2 3 26 26 H 1.08994 * 109.47456 * 299.99861 * 1 2 3 27 27 H 1.09002 * 109.46931 * 294.99901 * 4 2 1 28 28 H 1.08995 * 109.46999 * 55.00047 * 4 2 1 29 29 H 0.97002 * 120.00257 * 179.97438 * 8 7 5 30 30 H 1.00903 * 110.99954 * 38.95573 * 13 2 1 31 31 H 1.09000 * 110.90199 * 338.64605 * 16 14 13 32 32 H 1.09002 * 110.90654 * 102.24719 * 16 14 13 33 33 H 1.09001 * 109.47129 * 175.63974 * 19 17 16 34 34 H 1.09000 * 109.47354 * 295.64130 * 19 17 16 35 35 H 1.09001 * 109.47209 * 55.64052 * 19 17 16 36 36 H 1.09001 * 109.47251 * 296.32248 * 23 21 20 37 37 H 1.09004 * 109.47530 * 56.32722 * 23 21 20 38 38 H 1.08999 * 109.47183 * 176.32171 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3127 6 1 4.0790 -0.0862 -0.5391 7 6 4.2305 -1.1935 -2.3577 8 7 5.5411 -1.1002 -2.4133 9 14 3.3016 -2.1086 -3.6954 10 1 2.9410 -1.1637 -4.7827 11 1 4.1600 -3.1894 -4.2432 12 1 2.0655 -2.7003 -3.1234 13 7 2.0196 -0.6925 1.1995 14 6 2.0823 0.2225 2.3469 15 1 1.2002 0.8623 2.3722 16 6 3.3710 1.0785 2.2876 17 6 3.8129 1.0994 3.7754 18 1 4.8856 1.2757 3.8552 19 6 3.0346 2.1614 4.5547 20 8 3.4788 -0.2238 4.2466 21 6 2.2119 -0.5699 3.6622 22 1 1.4022 -0.2985 4.3397 23 6 2.1657 -2.0713 3.3718 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 1.7517 -1.7715 -1.2056 28 1 1.6055 -0.2617 -2.1370 29 1 6.0257 -1.5076 -3.1483 30 1 1.4495 -1.4980 1.4100 31 1 4.1268 0.6008 1.6642 32 1 3.1533 2.0850 1.9301 33 1 3.3031 2.1073 5.6097 34 1 3.2812 3.1499 4.1672 35 1 1.9651 1.9835 4.4424 36 1 2.9229 -2.3210 2.6285 37 1 2.3613 -2.6252 4.2900 38 1 1.1801 -2.3374 2.9899 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179528.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:17 Heat of formation + Delta-G solvation = -72.382189 kcal Electronic energy + Delta-G solvation = -16830.269008 eV Core-core repulsion = 14285.561074 eV Total energy + Delta-G solvation = -2544.707934 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.00124 -37.91733 -34.85078 -33.53263 -33.18282 -30.28898 -29.44337 -28.42533 -25.57596 -24.60157 -22.18435 -21.15714 -20.78819 -18.75592 -17.29763 -17.25961 -16.52810 -16.18938 -15.81834 -15.54553 -14.87612 -14.25908 -14.09414 -13.83821 -13.74650 -13.41610 -13.28894 -13.16718 -12.88306 -12.75038 -12.68114 -12.41874 -12.09953 -11.84782 -11.65282 -11.60417 -11.52348 -11.33438 -11.12179 -10.65629 -10.54523 -8.98708 -8.14716 -6.12980 1.37506 1.40097 1.50882 2.44085 2.91466 3.17231 3.34768 3.64634 3.87296 4.09579 4.14699 4.22263 4.34465 4.42514 4.43343 4.54231 4.56883 4.59155 4.66062 4.87860 4.90906 4.98895 5.07227 5.14917 5.16174 5.18587 5.24851 5.30449 5.36860 5.44007 5.58218 5.79245 6.06077 6.37983 6.54099 6.76871 6.95915 7.47378 9.02726 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030524 B = 0.007633 C = 0.007096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.085323 B = 3667.608604 C = 3944.950336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 H 0.054 0.946 4 C -0.003 4.003 5 C -0.485 4.485 6 H 0.035 0.965 7 C -0.008 4.008 8 N -0.961 5.961 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.292 1.292 12 H -0.248 1.248 13 N -0.675 5.675 14 C 0.064 3.936 15 H 0.065 0.935 16 C -0.139 4.139 17 C 0.070 3.930 18 H 0.096 0.904 19 C -0.160 4.160 20 O -0.390 6.390 21 C 0.077 3.923 22 H 0.086 0.914 23 C -0.150 4.150 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.016 0.984 28 H 0.017 0.983 29 H 0.259 0.741 30 H 0.343 0.657 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.979 3.601 12.052 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.009 4.009 3 H 0.072 0.928 4 C -0.041 4.041 5 C -0.524 4.524 6 H 0.054 0.946 7 C -0.202 4.202 8 N -0.604 5.604 9 Si 0.771 3.229 10 H -0.196 1.196 11 H -0.219 1.219 12 H -0.172 1.172 13 N -0.310 5.310 14 C -0.046 4.046 15 H 0.082 0.918 16 C -0.178 4.178 17 C 0.013 3.987 18 H 0.114 0.886 19 C -0.218 4.218 20 O -0.309 6.309 21 C 0.019 3.981 22 H 0.104 0.896 23 C -0.207 4.207 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.166 0.834 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.079 3.488 11.938 16.656 hybrid contribution -0.520 -0.202 -0.908 1.065 sum -11.599 3.286 11.030 16.340 Atomic orbital electron populations 1.22444 0.95919 1.02331 1.02375 1.21361 0.92348 0.96798 0.90412 0.92776 1.19570 0.94440 0.95982 0.94062 1.21340 0.92171 1.32091 1.06796 0.94639 1.25976 0.95515 0.97766 1.00925 1.70093 1.08502 1.48199 1.33579 0.85726 0.79247 0.78585 0.79363 1.19602 1.21875 1.17185 1.60624 1.58569 1.09212 1.02547 1.22814 0.97131 0.93901 0.90760 0.91764 1.23205 0.97854 0.99979 0.96733 1.23238 1.00283 0.83486 0.91734 0.88603 1.22165 1.00562 0.98324 1.00722 1.88876 1.38351 1.33248 1.70474 1.22859 0.86716 0.96087 0.92389 0.89637 1.21840 1.02898 0.93942 1.02051 0.92084 0.91857 0.91736 0.96610 0.96442 0.93234 0.83436 0.93213 0.90256 0.91169 0.90270 0.91918 0.92874 0.91642 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.70 9.15 71.98 0.66 -4.04 16 2 C 0.10 3.72 2.40 44.91 0.11 3.82 16 3 H 0.05 2.14 7.52 -2.39 -0.02 2.13 16 4 C 0.00 -0.13 3.72 29.85 0.11 -0.02 16 5 C -0.49 -28.20 9.39 25.60 0.24 -27.96 16 6 H 0.04 2.30 7.64 -2.91 -0.02 2.28 16 7 C -0.01 -0.45 5.47 84.66 0.46 0.01 16 8 N -0.96 -62.39 13.96 21.45 0.30 -62.09 16 9 Si 0.95 45.62 27.47 68.60 1.88 47.50 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 12 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 13 N -0.67 -23.87 4.81 -464.41 -2.23 -26.11 16 14 C 0.06 1.92 2.76 45.91 0.13 2.05 16 15 H 0.06 1.66 7.23 -2.39 -0.02 1.64 16 16 C -0.14 -4.62 5.89 31.98 0.19 -4.43 16 17 C 0.07 1.97 4.29 31.35 0.13 2.11 16 18 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 19 C -0.16 -3.28 9.40 71.98 0.68 -2.60 16 20 O -0.39 -12.39 10.95 -148.98 -1.63 -14.02 16 21 C 0.08 2.11 3.46 30.96 0.11 2.21 16 22 H 0.09 1.89 8.06 -2.39 -0.02 1.87 16 23 C -0.15 -4.02 8.27 71.98 0.60 -3.42 16 24 H 0.06 1.57 8.13 -2.38 -0.02 1.55 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.06 1.48 7.40 -2.39 -0.02 1.46 16 27 H 0.02 0.72 7.20 -2.39 -0.02 0.71 16 28 H 0.02 0.78 7.57 -2.39 -0.02 0.77 16 29 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 30 H 0.34 10.75 5.82 -89.69 -0.52 10.23 16 31 H 0.05 2.16 7.72 -2.39 -0.02 2.14 16 32 H 0.08 2.40 8.05 -2.39 -0.02 2.38 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.20 7.30 -2.39 -0.02 1.18 16 36 H 0.05 1.80 7.42 -2.39 -0.02 1.78 16 37 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.08 1.85 7.13 -2.39 -0.02 1.83 16 Total: -1.00 -69.16 295.34 2.17 -67.00 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.44 Total: 19.99 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 3.41 Total: -32.27 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -1.93 Total: -88.19 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -1.63 Total: -14.02 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.88 Total: 47.50 kcal Total: -69.16 2.17 -67.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179528.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.384 kcal (2) G-P(sol) polarization free energy of solvation -69.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds