Wall clock time and date at job start Mon Mar 30 2020 04:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46671 * 2 1 4 4 C 1.52999 * 109.46983 * 239.99978 * 2 1 3 5 5 C 1.50702 * 109.46590 * 170.11362 * 4 2 1 6 6 H 1.07995 * 120.00536 * 354.74255 * 5 4 2 7 7 C 1.37885 * 119.99798 * 174.74233 * 5 4 2 8 8 N 1.31515 * 119.99856 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99860 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47375 * 89.99688 * 9 7 5 11 11 H 1.48504 * 109.46793 * 209.99801 * 9 7 5 12 12 H 1.48499 * 109.46869 * 329.99321 * 9 7 5 13 13 N 1.46895 * 109.46795 * 120.00164 * 2 1 3 14 14 C 1.47009 * 111.00015 * 149.10297 * 13 2 1 15 15 C 1.53104 * 109.26105 * 182.38883 * 14 13 2 16 16 O 1.43014 * 109.25885 * 303.15385 * 15 14 13 17 17 C 1.43019 * 113.73738 * 58.66744 * 16 15 14 18 18 C 1.47020 * 111.00131 * 272.74073 * 13 2 1 19 19 C 1.53002 * 109.50205 * 297.54204 * 18 13 2 20 20 C 1.52998 * 109.50747 * 57.62587 * 18 13 2 21 21 H 1.08992 * 109.47518 * 293.69246 * 1 2 3 22 22 H 1.09001 * 109.47051 * 53.69426 * 1 2 3 23 23 H 1.09002 * 109.46836 * 173.68630 * 1 2 3 24 24 H 1.08994 * 109.47335 * 290.10797 * 4 2 1 25 25 H 1.09000 * 109.47351 * 50.11369 * 4 2 1 26 26 H 0.97001 * 119.99763 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.50977 * 302.32631 * 14 13 2 28 28 H 1.09002 * 109.50681 * 62.45578 * 14 13 2 29 29 H 1.09002 * 109.50656 * 183.21638 * 15 14 13 30 30 H 1.08999 * 109.53659 * 63.11086 * 15 14 13 31 31 H 1.09003 * 109.50568 * 181.39288 * 17 16 15 32 32 H 1.09000 * 109.54093 * 61.28393 * 17 16 15 33 33 H 1.09004 * 109.46931 * 60.00105 * 19 18 13 34 34 H 1.08998 * 109.46968 * 180.02562 * 19 18 13 35 35 H 1.09001 * 109.47112 * 300.00193 * 19 18 13 36 36 H 1.09001 * 109.47027 * 50.84670 * 20 18 13 37 37 H 1.08997 * 109.47052 * 170.84129 * 20 18 13 38 38 H 1.09002 * 109.47157 * 290.84855 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5271 -0.5134 -1.3772 6 1 4.0418 0.1427 -0.6910 7 6 4.2308 -1.1611 -2.3705 8 7 5.5285 -0.9794 -2.4825 9 14 3.3405 -2.2955 -3.5580 10 1 2.8800 -1.5168 -4.7355 11 1 4.2650 -3.3684 -4.0048 12 1 2.1689 -2.9034 -2.8774 13 7 2.0196 -0.6925 1.1994 14 6 3.3056 -1.3549 0.9373 15 6 3.7488 -2.1119 2.1921 16 8 3.8237 -1.2000 3.2913 17 6 2.5883 -0.5375 3.5748 18 6 2.1334 0.2354 2.3341 19 6 3.1589 1.3220 2.0045 20 6 0.7731 0.8817 2.6038 21 1 -0.3634 0.4129 0.9410 22 1 -0.3633 0.6085 -0.8282 23 1 -0.3633 -1.0215 -0.1130 24 1 1.8281 -1.7871 -1.1654 25 1 1.5398 -0.3195 -2.1304 26 1 6.0234 -1.4347 -3.1816 27 1 3.1920 -2.0560 0.1104 28 1 4.0549 -0.6063 0.6802 29 1 4.7289 -2.5573 2.0213 30 1 3.0269 -2.8965 2.4186 31 1 2.7291 0.1558 4.4041 32 1 1.8317 -1.2754 3.8416 33 1 2.8364 1.8694 1.1188 34 1 3.2431 2.0093 2.8462 35 1 4.1281 0.8610 1.8139 36 1 0.0109 0.1062 2.6792 37 1 0.8156 1.4413 3.5383 38 1 0.5236 1.5581 1.7862 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:21 Heat of formation + Delta-G solvation = -23.834811 kcal Electronic energy + Delta-G solvation = -17703.622299 eV Core-core repulsion = 15161.019538 eV Total energy + Delta-G solvation = -2542.602762 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.94805 -36.41155 -33.98937 -32.06672 -31.06183 -28.33678 -27.35811 -26.73894 -25.20593 -22.68918 -21.78279 -19.82879 -18.09509 -16.75797 -16.13681 -15.67187 -14.80337 -14.48601 -14.16961 -14.12526 -13.42814 -13.23137 -12.71369 -12.44066 -12.10674 -11.87976 -11.76789 -11.53062 -11.23105 -11.04380 -11.00446 -10.62229 -10.56037 -10.53108 -10.27311 -9.80392 -9.74579 -9.32419 -9.04714 -8.87426 -8.52410 -7.37093 -6.07040 -4.01120 3.27831 3.36439 3.39704 4.34918 4.41623 4.52887 5.13080 5.25199 5.37689 5.44287 5.67854 5.75403 5.89218 5.92193 5.95202 5.98633 6.03477 6.08207 6.15946 6.21888 6.29529 6.37055 6.40185 6.49873 6.67609 6.74973 6.81350 6.89534 7.16888 7.25964 7.37459 7.66643 7.70897 7.92834 8.01371 8.46606 8.91782 9.52573 11.04535 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030061 B = 0.010623 C = 0.009120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.207481 B = 2635.207298 C = 3069.547612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.087 3.913 3 H 0.047 0.953 4 C -0.021 4.021 5 C -0.517 4.517 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.900 5.900 9 Si 0.874 3.126 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.519 5.519 14 C 0.023 3.977 15 C 0.055 3.945 16 O -0.390 6.390 17 C 0.080 3.920 18 C 0.069 3.931 19 C -0.173 4.173 20 C -0.139 4.139 21 H 0.062 0.938 22 H 0.045 0.955 23 H 0.050 0.950 24 H 0.027 0.973 25 H 0.015 0.985 26 H 0.263 0.737 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.872 1.056 9.068 12.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 H 0.065 0.935 4 C -0.058 4.058 5 C -0.554 4.554 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.539 5.539 9 Si 0.701 3.299 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.245 5.245 14 C -0.104 4.104 15 C -0.022 4.022 16 O -0.309 6.309 17 C 0.002 3.998 18 C -0.022 4.022 19 C -0.232 4.232 20 C -0.196 4.196 21 H 0.081 0.919 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.072 0.928 27 H 0.124 0.876 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.885 0.656 9.179 12.118 hybrid contribution 0.018 -0.029 -1.229 1.230 sum -7.868 0.627 7.950 11.202 Atomic orbital electron populations 1.22259 0.96535 1.01361 1.01089 1.21614 0.93238 0.96877 0.90333 0.93530 1.19907 0.97079 0.96344 0.92482 1.21249 0.90914 1.28040 1.15243 0.90367 1.24952 0.94692 0.96700 0.97100 1.69903 1.06724 1.43589 1.33671 0.86872 0.80021 0.81100 0.81877 1.20486 1.21496 1.18920 1.62556 1.28313 1.28685 1.04927 1.23446 0.90895 1.00050 0.96025 1.22980 1.01150 0.91467 0.86613 1.87904 1.32554 1.58780 1.51617 1.22554 0.86578 0.95143 0.95508 1.21660 0.94915 0.92289 0.93333 1.22363 1.00838 0.98844 1.01114 1.22045 0.96383 1.00292 1.00869 0.91927 0.93599 0.93075 0.95483 0.96660 0.92751 0.87587 0.90272 0.89197 0.93861 0.89729 0.93230 0.92157 0.93274 0.91327 0.91727 0.93093 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.96 37.16 0.33 -2.22 16 2 C 0.09 1.71 1.85 -67.71 -0.13 1.58 16 3 H 0.05 0.96 5.46 -51.93 -0.28 0.68 16 4 C -0.02 -0.47 3.10 -27.88 -0.09 -0.56 16 5 C -0.52 -13.64 6.37 -34.44 -0.22 -13.86 16 6 H 0.08 2.24 6.08 -52.49 -0.32 1.92 16 7 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.90 -26.63 13.96 55.43 0.77 -25.85 16 9 Si 0.87 21.16 27.58 -169.99 -4.69 16.47 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.26 -6.20 6.39 56.52 0.36 -5.84 16 13 N -0.52 -9.75 4.40 -210.80 -0.93 -10.68 16 14 C 0.02 0.47 3.59 -3.71 -0.01 0.46 16 15 C 0.05 1.00 7.01 37.21 0.26 1.26 16 16 O -0.39 -7.06 10.28 -35.23 -0.36 -7.43 16 17 C 0.08 1.23 5.69 37.21 0.21 1.44 16 18 C 0.07 1.11 0.68 -131.49 -0.09 1.03 16 19 C -0.17 -2.98 7.75 37.16 0.29 -2.69 16 20 C -0.14 -1.87 6.83 37.16 0.25 -1.61 16 21 H 0.06 0.91 4.06 -51.93 -0.21 0.70 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.03 0.64 5.96 -51.93 -0.31 0.33 16 25 H 0.02 0.35 7.80 -51.93 -0.41 -0.05 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.11 2.45 5.37 -51.93 -0.28 2.17 16 28 H 0.08 1.89 3.73 -51.93 -0.19 1.69 16 29 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.09 6.08 -51.93 -0.32 0.77 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.36 6.07 -51.93 -0.31 1.04 16 36 H 0.06 0.85 7.30 -51.93 -0.38 0.47 16 37 H 0.05 0.58 8.12 -51.93 -0.42 0.16 16 38 H 0.06 0.88 6.15 -51.93 -0.32 0.56 16 LS Contribution 271.60 15.07 4.09 4.09 Total: -1.00 -28.34 271.60 -6.28 -34.63 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.89 Total: 2.20 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 0.72 Total: -13.43 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.15 Total: -36.54 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.36 Total: -7.43 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.69 Total: 16.47 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.34 -6.28 -34.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.791 kcal (2) G-P(sol) polarization free energy of solvation -28.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds