Wall clock time and date at job start Mon Mar 30 2020 04:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46671 * 2 1 4 4 C 1.52999 * 109.46983 * 239.99978 * 2 1 3 5 5 C 1.50702 * 109.46590 * 170.11362 * 4 2 1 6 6 H 1.07995 * 120.00536 * 354.74255 * 5 4 2 7 7 C 1.37885 * 119.99798 * 174.74233 * 5 4 2 8 8 N 1.31515 * 119.99856 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99860 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47375 * 89.99688 * 9 7 5 11 11 H 1.48504 * 109.46793 * 209.99801 * 9 7 5 12 12 H 1.48499 * 109.46869 * 329.99321 * 9 7 5 13 13 N 1.46895 * 109.46795 * 120.00164 * 2 1 3 14 14 C 1.47009 * 111.00015 * 149.10297 * 13 2 1 15 15 C 1.53104 * 109.26105 * 182.38883 * 14 13 2 16 16 O 1.43014 * 109.25885 * 303.15385 * 15 14 13 17 17 C 1.43019 * 113.73738 * 58.66744 * 16 15 14 18 18 C 1.47020 * 111.00131 * 272.74073 * 13 2 1 19 19 C 1.53002 * 109.50205 * 297.54204 * 18 13 2 20 20 C 1.52998 * 109.50747 * 57.62587 * 18 13 2 21 21 H 1.08992 * 109.47518 * 293.69246 * 1 2 3 22 22 H 1.09001 * 109.47051 * 53.69426 * 1 2 3 23 23 H 1.09002 * 109.46836 * 173.68630 * 1 2 3 24 24 H 1.08994 * 109.47335 * 290.10797 * 4 2 1 25 25 H 1.09000 * 109.47351 * 50.11369 * 4 2 1 26 26 H 0.97001 * 119.99763 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.50977 * 302.32631 * 14 13 2 28 28 H 1.09002 * 109.50681 * 62.45578 * 14 13 2 29 29 H 1.09002 * 109.50656 * 183.21638 * 15 14 13 30 30 H 1.08999 * 109.53659 * 63.11086 * 15 14 13 31 31 H 1.09003 * 109.50568 * 181.39288 * 17 16 15 32 32 H 1.09000 * 109.54093 * 61.28393 * 17 16 15 33 33 H 1.09004 * 109.46931 * 60.00105 * 19 18 13 34 34 H 1.08998 * 109.46968 * 180.02562 * 19 18 13 35 35 H 1.09001 * 109.47112 * 300.00193 * 19 18 13 36 36 H 1.09001 * 109.47027 * 50.84670 * 20 18 13 37 37 H 1.08997 * 109.47052 * 170.84129 * 20 18 13 38 38 H 1.09002 * 109.47157 * 290.84855 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5271 -0.5134 -1.3772 6 1 4.0418 0.1427 -0.6910 7 6 4.2308 -1.1611 -2.3705 8 7 5.5285 -0.9794 -2.4825 9 14 3.3405 -2.2955 -3.5580 10 1 2.8800 -1.5168 -4.7355 11 1 4.2650 -3.3684 -4.0048 12 1 2.1689 -2.9034 -2.8774 13 7 2.0196 -0.6925 1.1994 14 6 3.3056 -1.3549 0.9373 15 6 3.7488 -2.1119 2.1921 16 8 3.8237 -1.2000 3.2913 17 6 2.5883 -0.5375 3.5748 18 6 2.1334 0.2354 2.3341 19 6 3.1589 1.3220 2.0045 20 6 0.7731 0.8817 2.6038 21 1 -0.3634 0.4129 0.9410 22 1 -0.3633 0.6085 -0.8282 23 1 -0.3633 -1.0215 -0.1130 24 1 1.8281 -1.7871 -1.1654 25 1 1.5398 -0.3195 -2.1304 26 1 6.0234 -1.4347 -3.1816 27 1 3.1920 -2.0560 0.1104 28 1 4.0549 -0.6063 0.6802 29 1 4.7289 -2.5573 2.0213 30 1 3.0269 -2.8965 2.4186 31 1 2.7291 0.1558 4.4041 32 1 1.8317 -1.2754 3.8416 33 1 2.8364 1.8694 1.1188 34 1 3.2431 2.0093 2.8462 35 1 4.1281 0.8610 1.8139 36 1 0.0109 0.1062 2.6792 37 1 0.8156 1.4413 3.5383 38 1 0.5236 1.5581 1.7862 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:21 Heat of formation + Delta-G solvation = -43.656828 kcal Electronic energy + Delta-G solvation = -17704.481847 eV Core-core repulsion = 15161.019538 eV Total energy + Delta-G solvation = -2543.462309 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.40082 -37.90838 -35.62732 -33.96761 -32.57271 -30.13855 -28.72873 -28.11223 -26.52101 -24.56185 -23.30289 -21.43399 -19.70153 -18.66016 -17.58712 -17.14266 -16.47811 -15.95402 -15.84213 -15.59077 -15.01154 -14.83618 -14.19416 -14.07158 -13.72454 -13.49528 -13.15328 -13.03186 -12.72232 -12.54170 -12.42150 -12.19733 -12.16811 -12.04025 -11.83493 -11.61042 -11.28090 -10.95624 -10.93339 -10.72374 -10.27863 -8.96713 -8.22376 -6.19453 1.33967 1.36923 1.46879 2.37086 2.96315 3.08775 3.14252 3.86655 4.06354 4.15644 4.22327 4.41606 4.44092 4.47771 4.63394 4.69260 4.71449 4.73069 4.80861 4.89592 4.95773 5.02716 5.07781 5.10525 5.15534 5.21985 5.29364 5.37301 5.51544 5.52231 5.64980 5.72427 6.22984 6.28856 6.38490 6.49252 6.77467 7.36262 8.92116 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030061 B = 0.010623 C = 0.009120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.207481 B = 2635.207298 C = 3069.547612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.088 3.912 3 H 0.032 0.968 4 C -0.018 4.018 5 C -0.502 4.502 6 H 0.043 0.957 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.936 3.064 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.249 1.249 13 N -0.514 5.514 14 C 0.033 3.967 15 C 0.063 3.937 16 O -0.404 6.404 17 C 0.075 3.925 18 C 0.063 3.937 19 C -0.166 4.166 20 C -0.133 4.133 21 H 0.087 0.913 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.024 0.976 25 H 0.017 0.983 26 H 0.262 0.738 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.559 0.863 10.433 14.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 H 0.050 0.950 4 C -0.055 4.055 5 C -0.540 4.540 6 H 0.061 0.939 7 C -0.188 4.188 8 N -0.590 5.590 9 Si 0.761 3.239 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.173 1.173 13 N -0.239 5.239 14 C -0.095 4.095 15 C -0.014 4.014 16 O -0.322 6.322 17 C -0.002 4.002 18 C -0.027 4.027 19 C -0.225 4.225 20 C -0.190 4.190 21 H 0.106 0.894 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.035 0.965 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.131 0.869 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.601 0.473 10.559 14.970 hybrid contribution 0.900 0.123 -1.570 1.814 sum -9.701 0.597 8.989 13.239 Atomic orbital electron populations 1.22195 0.93348 1.01874 1.02969 1.21573 0.95625 0.95506 0.89275 0.94966 1.19861 0.94556 0.96603 0.94508 1.21411 0.92758 1.26230 1.13612 0.93914 1.25752 0.95265 0.98619 0.99155 1.70053 1.08511 1.45524 1.34929 0.85869 0.79210 0.79131 0.79687 1.19930 1.21528 1.17251 1.62667 1.26574 1.29373 1.05288 1.23040 0.91055 0.98757 0.96641 1.22825 1.01500 0.91522 0.85580 1.87889 1.34420 1.58962 1.50977 1.22827 0.85887 0.95800 0.95660 1.21891 0.96554 0.91675 0.92564 1.22294 0.99281 0.99419 1.01495 1.22005 0.94218 1.00543 1.02265 0.89432 0.92670 0.92996 0.95728 0.96474 0.92887 0.90432 0.94383 0.89424 0.92023 0.86915 0.91683 0.93732 0.90574 0.94990 0.90732 0.90198 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 8.96 71.98 0.65 -3.76 16 2 C 0.09 3.39 1.85 44.92 0.08 3.47 16 3 H 0.03 1.34 5.46 -2.39 -0.01 1.32 16 4 C -0.02 -0.81 3.10 29.85 0.09 -0.72 16 5 C -0.50 -27.51 6.37 25.60 0.16 -27.35 16 6 H 0.04 2.62 6.08 -2.91 -0.02 2.60 16 7 C 0.01 0.48 5.47 84.66 0.46 0.94 16 8 N -0.95 -58.53 13.96 21.45 0.30 -58.23 16 9 Si 0.94 44.10 27.58 68.60 1.89 46.00 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.25 -10.98 6.39 99.48 0.64 -10.35 16 13 N -0.51 -18.79 4.40 -820.84 -3.61 -22.41 16 14 C 0.03 1.40 3.59 86.32 0.31 1.71 16 15 C 0.06 2.27 7.01 72.02 0.50 2.77 16 16 O -0.40 -14.13 10.28 -148.98 -1.53 -15.67 16 17 C 0.07 2.09 5.69 72.01 0.41 2.50 16 18 C 0.06 1.92 0.68 3.54 0.00 1.93 16 19 C -0.17 -5.67 7.75 71.98 0.56 -5.12 16 20 C -0.13 -3.05 6.83 71.98 0.49 -2.56 16 21 H 0.09 2.20 4.06 -2.39 -0.01 2.19 16 22 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.02 1.15 5.96 -2.39 -0.01 1.13 16 25 H 0.02 0.78 7.80 -2.39 -0.02 0.76 16 26 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 27 H 0.08 3.69 5.37 -2.39 -0.01 3.68 16 28 H 0.04 1.94 3.73 -2.39 -0.01 1.93 16 29 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.04 1.63 6.08 -2.38 -0.01 1.61 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.03 1.30 6.07 -2.39 -0.01 1.29 16 36 H 0.07 1.60 7.30 -2.39 -0.02 1.59 16 37 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 38 H 0.06 1.45 6.15 -2.39 -0.01 1.44 16 Total: -1.00 -63.41 271.60 1.73 -61.67 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.97 Total: 14.81 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 3.72 Total: -26.17 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -3.32 Total: -80.64 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -1.53 Total: -15.67 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.89 Total: 46.00 kcal Total: -63.41 1.73 -61.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.016 kcal (2) G-P(sol) polarization free energy of solvation -63.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds