Wall clock time and date at job start Mon Mar 30 2020 04:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47600 * 2 1 4 4 C 1.52997 * 109.47185 * 119.99868 * 2 1 3 5 5 C 1.50706 * 109.47313 * 184.99671 * 4 2 1 6 6 H 1.08003 * 119.99622 * 0.02562 * 5 4 2 7 7 C 1.37871 * 119.99939 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00070 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00146 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47009 * 90.00175 * 9 7 5 11 11 H 1.48503 * 109.47075 * 209.99976 * 9 7 5 12 12 H 1.48497 * 109.47532 * 330.00069 * 9 7 5 13 13 N 1.46905 * 109.47248 * 240.00274 * 2 1 3 14 14 C 1.46889 * 111.00153 * 84.99975 * 13 2 1 15 15 C 1.53009 * 109.47118 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47073 * 184.94333 * 15 14 13 17 17 C 1.53001 * 115.54724 * 296.14054 * 16 15 14 18 18 O 1.42901 * 109.47574 * 300.15664 * 17 16 15 19 19 C 1.53001 * 117.49977 * 150.47611 * 16 15 14 20 20 C 1.52995 * 117.50160 * 81.81239 * 16 15 14 21 21 H 1.08992 * 109.47086 * 300.00343 * 1 2 3 22 22 H 1.08994 * 109.46838 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46834 * 60.00008 * 1 2 3 24 24 H 1.08993 * 109.47540 * 304.99970 * 4 2 1 25 25 H 1.08999 * 109.47006 * 65.00333 * 4 2 1 26 26 H 0.97000 * 120.00415 * 179.97438 * 8 7 5 27 27 H 1.00901 * 110.99527 * 321.04437 * 13 2 1 28 28 H 1.09005 * 109.47405 * 299.99899 * 14 13 2 29 29 H 1.08995 * 109.47517 * 60.00441 * 14 13 2 30 30 H 1.09002 * 109.46655 * 304.93614 * 15 14 13 31 31 H 1.08992 * 109.46993 * 64.93983 * 15 14 13 32 32 H 1.09003 * 109.47273 * 60.15793 * 17 16 15 33 33 H 1.08999 * 109.47202 * 180.15293 * 17 16 15 34 34 H 0.96699 * 114.00267 * 179.97438 * 18 17 16 35 35 H 1.09006 * 117.49596 * 359.97438 * 19 16 15 36 36 H 1.09002 * 117.49953 * 145.01217 * 19 16 15 37 37 H 1.08998 * 117.49999 * 214.97742 * 20 16 15 38 38 H 1.08999 * 117.50131 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5420 -0.6149 1.3127 6 1 4.0790 -0.0855 0.5395 7 6 4.2304 -1.1935 2.3577 8 7 5.5411 -1.1004 2.4134 9 14 3.3016 -2.1098 3.6946 10 1 3.1711 -3.5396 3.3155 11 1 4.0450 -2.0033 4.9757 12 1 1.9505 -1.5150 3.8553 13 7 2.0197 -0.6925 -1.1995 14 6 2.0825 0.2226 -2.3468 15 6 2.5951 -0.5332 -3.5745 16 6 2.7777 0.4454 -4.7364 17 6 1.4984 1.1151 -5.2423 18 8 0.5840 0.1146 -5.6951 19 6 3.8619 0.1241 -5.7670 20 6 4.0670 1.2683 -4.7710 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 1.6055 -0.2618 2.1369 25 1 1.7517 -1.7715 1.2056 26 1 6.0255 -1.5071 3.1488 27 1 1.4496 -1.4979 -1.4101 28 1 1.0871 0.6163 -2.5526 29 1 2.7589 1.0461 -2.1182 30 1 3.5513 -1.0011 -3.3400 31 1 1.8743 -1.3008 -3.8558 32 1 1.0420 1.6848 -4.4328 33 1 1.7409 1.7856 -6.0667 34 1 -0.2514 0.4680 -6.0302 35 1 4.4455 -0.7843 -5.6170 36 1 3.6640 0.3901 -6.8053 37 1 4.0040 2.2866 -5.1546 38 1 4.7855 1.1123 -3.9663 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829189163.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:46 Heat of formation + Delta-G solvation = -39.732100 kcal Electronic energy + Delta-G solvation = -15992.934269 eV Core-core repulsion = 13449.642149 eV Total energy + Delta-G solvation = -2543.292120 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.86192 -36.70982 -35.81940 -32.82119 -31.51063 -28.29228 -27.54910 -26.49194 -23.05411 -22.49648 -21.69425 -19.80380 -18.69610 -17.40864 -16.51870 -15.74515 -15.55629 -14.52138 -14.34751 -14.13268 -13.60450 -13.57073 -12.89101 -12.73511 -12.31155 -12.13594 -11.75860 -11.62177 -11.48263 -11.33334 -11.08544 -10.73913 -10.55637 -10.37633 -10.10034 -9.99128 -9.81861 -9.57985 -9.44641 -8.97219 -8.36738 -7.51631 -5.85360 -3.78659 3.40702 3.47435 3.50352 3.60585 4.25839 4.59325 4.60999 4.79998 4.88120 5.11749 5.18811 5.30958 5.49419 5.52734 5.64080 5.65789 5.69059 5.78175 5.89766 5.92913 5.97993 6.01784 6.17175 6.19618 6.37724 6.48484 6.58115 6.58565 6.87821 7.23692 7.38396 7.50219 7.89670 7.98919 8.19131 8.78849 9.26284 9.78040 11.28924 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033629 B = 0.005797 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.425292 B = 4829.117945 C = 5415.126908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.098 3.902 3 H 0.068 0.932 4 C -0.005 4.005 5 C -0.486 4.486 6 H 0.076 0.924 7 C 0.059 3.941 8 N -0.911 5.911 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.664 5.664 14 C 0.067 3.933 15 C -0.076 4.076 16 C -0.122 4.122 17 C 0.114 3.886 18 O -0.567 6.567 19 C -0.169 4.169 20 C -0.167 4.167 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.040 0.960 24 H 0.015 0.985 25 H 0.011 0.989 26 H 0.259 0.741 27 H 0.329 0.671 28 H 0.015 0.985 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.375 0.625 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.405 4.672 -15.092 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.011 4.011 3 H 0.087 0.913 4 C -0.042 4.042 5 C -0.525 4.525 6 H 0.094 0.906 7 C -0.140 4.140 8 N -0.551 5.551 9 Si 0.704 3.296 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.294 5.294 14 C -0.062 4.062 15 C -0.113 4.113 16 C -0.123 4.123 17 C 0.036 3.964 18 O -0.372 6.372 19 C -0.207 4.207 20 C -0.204 4.204 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.034 0.966 25 H 0.029 0.971 26 H 0.068 0.932 27 H 0.147 0.853 28 H 0.033 0.967 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.221 0.779 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.088 4.315 -14.621 17.257 hybrid contribution -1.779 -0.019 0.372 1.817 sum -9.867 4.296 -14.249 17.856 Atomic orbital electron populations 1.22588 0.99586 1.01180 1.00764 1.21543 0.89622 0.98246 0.91707 0.91338 1.19614 0.97843 0.95113 0.91662 1.21047 0.89550 1.33555 1.08319 0.90602 1.25019 0.94685 0.96392 0.97901 1.69917 1.06421 1.46445 1.32361 0.86857 0.80313 0.80646 0.81821 1.20591 1.21738 1.19379 1.60462 1.57510 1.08705 1.02680 1.21869 0.98036 0.95953 0.90357 1.21014 1.02497 0.96393 0.91436 1.21352 0.89164 1.02308 0.99463 1.21619 0.88869 0.89122 0.96760 1.86518 1.30052 1.35766 1.84830 1.23015 1.02198 1.00184 0.95253 1.23065 0.98770 0.96002 1.02563 0.92574 0.93078 0.94096 0.96637 0.97070 0.93153 0.85347 0.96707 0.91445 0.90683 0.91535 0.93137 0.94026 0.77892 0.88558 0.89162 0.89033 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 9.16 37.16 0.34 -2.64 16 2 C 0.10 1.98 2.53 -67.71 -0.17 1.81 16 3 H 0.07 1.43 7.80 -51.93 -0.40 1.03 16 4 C 0.00 -0.11 3.72 -27.88 -0.10 -0.22 16 5 C -0.49 -14.17 9.39 -34.44 -0.32 -14.49 16 6 H 0.08 2.41 7.99 -52.48 -0.42 1.99 16 7 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16 8 N -0.91 -28.95 13.96 55.43 0.77 -28.18 16 9 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 13 N -0.66 -12.73 5.96 -106.73 -0.64 -13.36 16 14 C 0.07 1.09 5.19 -3.83 -0.02 1.07 16 15 C -0.08 -1.12 5.25 -26.73 -0.14 -1.26 16 16 C -0.12 -1.53 1.82 -154.51 -0.28 -1.81 16 17 C 0.11 1.23 6.62 37.16 0.25 1.47 16 18 O -0.57 -6.27 13.38 -35.23 -0.47 -6.74 16 19 C -0.17 -1.94 9.94 -26.69 -0.27 -2.21 16 20 C -0.17 -1.94 9.97 -26.69 -0.27 -2.20 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 23 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 24 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 25 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 26 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 27 H 0.33 5.87 8.47 -39.29 -0.33 5.53 16 28 H 0.01 0.23 6.60 -51.93 -0.34 -0.12 16 29 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 30 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 31 H 0.07 1.01 7.99 -51.93 -0.41 0.59 16 32 H 0.05 0.53 7.27 -51.93 -0.38 0.15 16 33 H 0.04 0.38 8.11 -51.93 -0.42 -0.04 16 34 H 0.37 2.34 9.12 45.56 0.42 2.75 16 35 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 309.48 15.07 4.66 4.66 Total: -1.00 -32.81 309.48 -7.42 -40.22 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.99 Total: 4.45 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -1.08 Total: -18.80 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.14 Total: -41.54 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.47 Total: -6.74 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.81 -7.42 -40.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189163.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.491 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds