Wall clock time and date at job start Mon Mar 30 2020 04:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47600 * 2 1 4 4 C 1.52997 * 109.47185 * 119.99868 * 2 1 3 5 5 C 1.50706 * 109.47313 * 184.99671 * 4 2 1 6 6 H 1.08003 * 119.99622 * 0.02562 * 5 4 2 7 7 C 1.37871 * 119.99939 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00070 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00146 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47009 * 90.00175 * 9 7 5 11 11 H 1.48503 * 109.47075 * 209.99976 * 9 7 5 12 12 H 1.48497 * 109.47532 * 330.00069 * 9 7 5 13 13 N 1.46905 * 109.47248 * 240.00274 * 2 1 3 14 14 C 1.46889 * 111.00153 * 84.99975 * 13 2 1 15 15 C 1.53009 * 109.47118 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47073 * 184.94333 * 15 14 13 17 17 C 1.53001 * 115.54724 * 296.14054 * 16 15 14 18 18 O 1.42901 * 109.47574 * 300.15664 * 17 16 15 19 19 C 1.53001 * 117.49977 * 150.47611 * 16 15 14 20 20 C 1.52995 * 117.50160 * 81.81239 * 16 15 14 21 21 H 1.08992 * 109.47086 * 300.00343 * 1 2 3 22 22 H 1.08994 * 109.46838 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46834 * 60.00008 * 1 2 3 24 24 H 1.08993 * 109.47540 * 304.99970 * 4 2 1 25 25 H 1.08999 * 109.47006 * 65.00333 * 4 2 1 26 26 H 0.97000 * 120.00415 * 179.97438 * 8 7 5 27 27 H 1.00901 * 110.99527 * 321.04437 * 13 2 1 28 28 H 1.09005 * 109.47405 * 299.99899 * 14 13 2 29 29 H 1.08995 * 109.47517 * 60.00441 * 14 13 2 30 30 H 1.09002 * 109.46655 * 304.93614 * 15 14 13 31 31 H 1.08992 * 109.46993 * 64.93983 * 15 14 13 32 32 H 1.09003 * 109.47273 * 60.15793 * 17 16 15 33 33 H 1.08999 * 109.47202 * 180.15293 * 17 16 15 34 34 H 0.96699 * 114.00267 * 179.97438 * 18 17 16 35 35 H 1.09006 * 117.49596 * 359.97438 * 19 16 15 36 36 H 1.09002 * 117.49953 * 145.01217 * 19 16 15 37 37 H 1.08998 * 117.49999 * 214.97742 * 20 16 15 38 38 H 1.08999 * 117.50131 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5420 -0.6149 1.3127 6 1 4.0790 -0.0855 0.5395 7 6 4.2304 -1.1935 2.3577 8 7 5.5411 -1.1004 2.4134 9 14 3.3016 -2.1098 3.6946 10 1 3.1711 -3.5396 3.3155 11 1 4.0450 -2.0033 4.9757 12 1 1.9505 -1.5150 3.8553 13 7 2.0197 -0.6925 -1.1995 14 6 2.0825 0.2226 -2.3468 15 6 2.5951 -0.5332 -3.5745 16 6 2.7777 0.4454 -4.7364 17 6 1.4984 1.1151 -5.2423 18 8 0.5840 0.1146 -5.6951 19 6 3.8619 0.1241 -5.7670 20 6 4.0670 1.2683 -4.7710 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 1.6055 -0.2618 2.1369 25 1 1.7517 -1.7715 1.2056 26 1 6.0255 -1.5071 3.1488 27 1 1.4496 -1.4979 -1.4101 28 1 1.0871 0.6163 -2.5526 29 1 2.7589 1.0461 -2.1182 30 1 3.5513 -1.0011 -3.3400 31 1 1.8743 -1.3008 -3.8558 32 1 1.0420 1.6848 -4.4328 33 1 1.7409 1.7856 -6.0667 34 1 -0.2514 0.4680 -6.0302 35 1 4.4455 -0.7843 -5.6170 36 1 3.6640 0.3901 -6.8053 37 1 4.0040 2.2866 -5.1546 38 1 4.7855 1.1123 -3.9663 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189163.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:46 Heat of formation + Delta-G solvation = -64.306488 kcal Electronic energy + Delta-G solvation = -15993.999895 eV Core-core repulsion = 13449.642149 eV Total energy + Delta-G solvation = -2544.357745 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.85892 -38.18401 -36.68335 -34.84672 -33.18893 -30.02739 -28.95825 -27.42728 -24.80345 -23.74202 -22.92311 -21.46620 -19.76442 -18.76606 -18.19151 -16.83199 -16.77435 -16.31365 -15.73821 -15.35630 -15.22667 -14.60043 -14.52128 -13.97822 -13.83306 -13.69083 -13.39929 -13.04427 -12.82220 -12.54683 -12.39772 -12.28396 -11.94420 -11.74490 -11.65129 -11.43712 -11.24840 -11.13967 -10.94484 -10.66790 -10.51575 -8.98470 -8.16607 -6.15516 1.38502 1.40072 1.51340 2.43530 2.69878 3.16212 3.37877 3.44875 3.84057 3.91996 4.05635 4.19008 4.25314 4.36104 4.39017 4.54327 4.55871 4.62743 4.68710 4.76251 4.86381 4.93287 5.01710 5.07540 5.14200 5.18806 5.23635 5.25000 5.33914 5.37570 5.53762 5.77367 6.36189 6.52273 6.75489 6.92396 6.95546 7.44965 9.01157 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033629 B = 0.005797 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.425292 B = 4829.117945 C = 5415.126908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 H 0.053 0.947 4 C -0.003 4.003 5 C -0.490 4.490 6 H 0.030 0.970 7 C -0.007 4.007 8 N -0.961 5.961 9 Si 0.949 3.051 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.246 1.246 13 N -0.690 5.690 14 C 0.078 3.922 15 C -0.067 4.067 16 C -0.135 4.135 17 C 0.118 3.882 18 O -0.586 6.586 19 C -0.164 4.164 20 C -0.167 4.167 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.021 0.979 25 H 0.015 0.985 26 H 0.261 0.739 27 H 0.337 0.663 28 H 0.035 0.965 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.395 0.605 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.959 4.731 -15.617 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 H 0.071 0.929 4 C -0.041 4.041 5 C -0.529 4.529 6 H 0.048 0.952 7 C -0.201 4.201 8 N -0.604 5.604 9 Si 0.774 3.226 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.170 1.170 13 N -0.320 5.320 14 C -0.051 4.051 15 C -0.105 4.105 16 C -0.136 4.136 17 C 0.040 3.960 18 O -0.394 6.394 19 C -0.201 4.201 20 C -0.204 4.204 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.039 0.961 25 H 0.033 0.967 26 H 0.069 0.931 27 H 0.155 0.845 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.245 0.755 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.680 4.386 -15.170 19.064 hybrid contribution -0.910 -0.009 0.462 1.020 sum -11.590 4.377 -14.709 19.231 Atomic orbital electron populations 1.22417 0.95901 1.02276 1.02239 1.21345 0.92460 0.96646 0.90403 0.92914 1.19586 0.94424 0.95889 0.94193 1.21313 0.92225 1.32416 1.06899 0.95166 1.26002 0.95570 0.97666 1.00911 1.70094 1.08523 1.48130 1.33623 0.85674 0.79662 0.79235 0.78055 1.19796 1.21456 1.16970 1.60336 1.58373 1.09807 1.03524 1.21772 0.98594 0.95026 0.89740 1.20875 1.00858 0.96820 0.91983 1.21402 0.90744 1.02391 0.99074 1.21578 0.87857 0.88924 0.97601 1.86462 1.31366 1.36565 1.85039 1.23072 1.01261 0.99745 0.96025 1.23067 0.97863 0.97273 1.02171 0.91724 0.92138 0.92029 0.96053 0.96699 0.93076 0.84466 0.94731 0.93300 0.93279 0.91698 0.92942 0.91829 0.75507 0.89423 0.87219 0.86814 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.03 9.16 71.98 0.66 -4.37 16 2 C 0.10 3.99 2.53 44.91 0.11 4.11 16 3 H 0.05 2.21 7.80 -2.39 -0.02 2.20 16 4 C 0.00 -0.15 3.72 29.85 0.11 -0.04 16 5 C -0.49 -29.25 9.39 25.60 0.24 -29.01 16 6 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 7 C -0.01 -0.43 5.47 84.65 0.46 0.03 16 8 N -0.96 -62.91 13.96 21.45 0.30 -62.61 16 9 Si 0.95 46.11 27.47 68.60 1.88 47.99 16 10 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.25 -10.97 6.54 99.48 0.65 -10.31 16 13 N -0.69 -26.42 5.96 -491.57 -2.93 -29.35 16 14 C 0.08 2.51 5.19 86.31 0.45 2.96 16 15 C -0.07 -2.01 5.25 30.60 0.16 -1.85 16 16 C -0.14 -3.26 1.82 -52.18 -0.09 -3.36 16 17 C 0.12 2.25 6.62 71.98 0.48 2.73 16 18 O -0.59 -11.47 13.38 -148.98 -1.99 -13.46 16 19 C -0.16 -3.60 9.94 30.62 0.30 -3.29 16 20 C -0.17 -3.79 9.97 30.62 0.31 -3.48 16 21 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 23 H 0.06 1.58 7.45 -2.39 -0.02 1.57 16 24 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 25 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 26 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 27 H 0.34 11.74 8.47 -89.69 -0.76 10.98 16 28 H 0.03 0.99 6.60 -2.38 -0.02 0.97 16 29 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16 30 H 0.05 1.68 8.10 -2.39 -0.02 1.66 16 31 H 0.06 1.94 7.99 -2.39 -0.02 1.92 16 32 H 0.05 0.97 7.27 -2.39 -0.02 0.95 16 33 H 0.06 0.95 8.11 -2.39 -0.02 0.93 16 34 H 0.40 3.80 9.12 -74.06 -0.68 3.13 16 35 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -71.94 309.48 -0.02 -71.96 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.46 Total: 21.05 kcal Atomic # 6 Polarization: -38.77 SS G_CDS: 3.19 Total: -35.58 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -2.63 Total: -91.96 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.99 Total: -13.46 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.88 Total: 47.99 kcal Total: -71.94 -0.02 -71.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189163.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.652 kcal (2) G-P(sol) polarization free energy of solvation -71.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds