Wall clock time and date at job start Mon Mar 30 2020 03:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00199 * 2 1 4 4 C 1.52995 * 109.47251 * 183.34495 * 3 2 1 5 5 N 1.46904 * 109.46786 * 64.60039 * 4 3 2 6 6 C 1.46898 * 111.00232 * 75.79063 * 5 4 3 7 7 C 1.52992 * 109.47193 * 189.99782 * 6 5 4 8 8 C 1.53001 * 109.47255 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47224 * 179.97438 * 8 7 6 10 10 H 1.07996 * 119.99947 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99677 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00374 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99711 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47202 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47183 * 119.99886 * 13 11 9 16 16 H 1.48504 * 109.47456 * 240.00208 * 13 11 9 17 17 C 1.46900 * 110.99471 * 199.73875 * 5 4 3 18 18 C 1.53005 * 117.49909 * 135.62499 * 17 5 4 19 19 C 1.52999 * 59.99919 * 252.51071 * 18 17 5 20 20 H 1.08996 * 109.47619 * 59.99844 * 1 2 3 21 21 H 1.09001 * 109.46915 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47206 * 299.99541 * 1 2 3 23 23 H 1.09006 * 109.46791 * 63.34615 * 3 2 1 24 24 H 1.08995 * 109.46676 * 303.34923 * 3 2 1 25 25 H 1.09002 * 109.46845 * 184.59547 * 4 3 2 26 26 H 1.08993 * 109.47191 * 304.59932 * 4 3 2 27 27 H 1.09004 * 109.46904 * 309.99750 * 6 5 4 28 28 H 1.08998 * 109.47293 * 69.99245 * 6 5 4 29 29 H 1.09004 * 109.47169 * 299.99806 * 7 6 5 30 30 H 1.08998 * 109.47439 * 59.99552 * 7 6 5 31 31 H 1.09004 * 109.47229 * 300.00205 * 8 7 6 32 32 H 1.09001 * 109.47349 * 59.99911 * 8 7 6 33 33 H 0.96998 * 119.99941 * 179.97438 * 12 11 9 34 34 H 1.09002 * 115.55549 * 281.32823 * 17 5 4 35 35 H 1.09003 * 117.49183 * 359.97438 * 18 17 5 36 36 H 1.08993 * 117.50461 * 145.01555 * 18 17 5 37 37 H 1.09004 * 117.49397 * 252.50763 * 19 18 17 38 38 H 1.08998 * 117.52254 * 107.48267 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5332 1.1856 -0.0842 5 7 3.9066 0.5849 -1.3717 6 6 3.7804 1.5593 -2.4637 7 6 3.9327 0.8427 -3.8068 8 6 3.8006 1.8575 -4.9442 9 6 3.9513 1.1517 -6.2672 10 1 4.1236 0.0860 -6.2941 11 6 3.8692 1.8668 -7.4432 12 7 3.6598 3.1647 -7.4104 13 14 4.0552 0.9919 -9.0831 14 1 4.2820 -0.4569 -8.8483 15 1 2.8194 1.1763 -9.8856 16 1 5.2129 1.5606 -9.8191 17 6 5.2647 0.0273 -1.3182 18 6 5.4844 -1.3576 -1.9304 19 6 5.4964 -1.1824 -0.4105 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.7369 1.8249 0.9185 24 1 1.6420 1.8671 -0.8584 25 1 3.9807 2.1762 -0.0020 26 1 3.8936 0.5555 0.7289 27 1 2.8009 2.0350 -2.4147 28 1 4.5576 2.3172 -2.3660 29 1 4.9123 0.3670 -3.8558 30 1 3.1556 0.0848 -3.9045 31 1 2.8209 2.3329 -4.8950 32 1 4.5776 2.6158 -4.8467 33 1 3.6024 3.6677 -8.2378 34 1 6.0742 0.7516 -1.4078 35 1 4.6211 -1.8550 -2.3725 36 1 6.4385 -1.5445 -2.4231 37 1 6.4585 -1.2541 0.0967 38 1 4.6413 -1.5643 0.1472 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579462.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:30 Heat of formation + Delta-G solvation = -29.410458 kcal Electronic energy + Delta-G solvation = -16037.023614 eV Core-core repulsion = 13494.179074 eV Total energy + Delta-G solvation = -2542.844540 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.70124 -37.32034 -34.63703 -33.36849 -31.45648 -28.94768 -26.46249 -25.73239 -23.11799 -22.28508 -21.67720 -20.34991 -19.62507 -16.52090 -16.26647 -16.08188 -15.48436 -15.16516 -14.76643 -14.40642 -13.75341 -13.56848 -13.21909 -12.47668 -12.31447 -12.02928 -11.61533 -11.42873 -11.39367 -11.24143 -10.87355 -10.77311 -10.53056 -10.44479 -10.12177 -9.91079 -9.53025 -9.45352 -9.22723 -8.97892 -8.29558 -7.96532 -5.94966 -3.96240 3.34343 3.41562 3.46616 3.90022 4.00126 4.08045 4.51111 5.12347 5.17333 5.20570 5.26532 5.34676 5.41017 5.41221 5.44586 5.53594 5.64221 5.71319 5.75846 5.83828 5.93968 6.02527 6.04960 6.26586 6.43346 6.47553 6.82497 6.89805 7.23146 7.27075 7.47177 7.54080 7.75781 7.91369 8.06650 8.50945 9.11420 9.67475 11.16697 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.005875 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.624924 B = 4765.091752 C = 5292.956061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.067 3.933 4 C 0.057 3.943 5 N -0.503 5.503 6 C 0.058 3.942 7 C -0.100 4.100 8 C 0.021 3.979 9 C -0.514 4.514 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.890 3.110 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.011 3.989 18 C -0.156 4.156 19 C -0.178 4.178 20 H 0.041 0.959 21 H 0.082 0.918 22 H 0.033 0.967 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.027 0.973 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.013 0.987 32 H 0.012 0.988 33 H 0.259 0.741 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.133 -4.680 16.135 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.010 4.010 4 C -0.071 4.071 5 N -0.227 5.227 6 C -0.069 4.069 7 C -0.138 4.138 8 C -0.017 4.017 9 C -0.552 4.552 10 H 0.074 0.926 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.718 3.282 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.098 4.098 18 C -0.194 4.194 19 C -0.215 4.215 20 H 0.059 0.941 21 H 0.100 0.900 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.373 -5.076 15.934 16.779 hybrid contribution 0.378 0.660 -0.858 1.146 sum -0.995 -4.416 15.076 15.741 Atomic orbital electron populations 1.22697 0.81914 1.02395 0.99538 1.87970 1.18723 1.27365 1.95214 1.22572 0.93812 0.85128 0.99527 1.22059 0.93728 0.98315 0.92999 1.61817 1.22285 1.35585 1.03059 1.22337 1.00101 0.92761 0.91674 1.21581 1.00800 0.99295 0.92173 1.19088 0.96850 0.93912 0.91806 1.21303 1.48323 0.94503 0.91092 0.92626 1.25029 0.95492 0.94835 0.99229 1.69978 1.50377 1.06294 1.27151 0.86560 0.77602 0.79933 0.84061 1.19707 1.21060 1.21092 1.22294 0.90766 0.90842 1.05850 1.22992 1.02915 0.98820 0.94631 1.23018 1.02284 1.02210 0.93990 0.94059 0.89971 0.94818 0.93595 0.92967 0.93501 0.90335 0.91458 0.95453 0.93143 0.92839 0.96824 0.96955 0.93175 0.90042 0.88037 0.89093 0.89372 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.37 -5.40 10.64 -35.23 -0.38 -5.77 16 3 C 0.07 0.86 6.13 37.15 0.23 1.09 16 4 C 0.06 0.76 5.34 -3.82 -0.02 0.74 16 5 N -0.50 -8.05 4.50 -226.65 -1.02 -9.07 16 6 C 0.06 1.06 4.78 -3.83 -0.02 1.04 16 7 C -0.10 -2.19 5.02 -26.73 -0.13 -2.32 16 8 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 9 C -0.51 -14.96 9.11 -34.44 -0.31 -15.28 16 10 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 11 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.52 13.29 55.43 0.74 -26.79 16 13 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 C 0.01 0.17 4.22 -67.71 -0.29 -0.12 16 18 C -0.16 -2.23 9.52 -26.73 -0.25 -2.48 16 19 C -0.18 -2.22 9.66 -26.73 -0.26 -2.48 16 20 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.71 6.67 -51.93 -0.35 0.37 16 25 H 0.05 0.58 8.00 -51.93 -0.42 0.16 16 26 H 0.08 0.98 7.19 -51.93 -0.37 0.61 16 27 H 0.07 1.22 6.57 -51.93 -0.34 0.88 16 28 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.05 1.09 6.73 -51.93 -0.35 0.74 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.10 1.26 8.02 -51.93 -0.42 0.84 16 LS Contribution 311.44 15.07 4.69 4.69 Total: -1.00 -31.37 311.44 -8.02 -39.39 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.86 Total: -3.12 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -0.18 Total: -16.42 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.28 Total: -35.85 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.38 Total: -5.77 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.37 -8.02 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579462.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.981 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds