Wall clock time and date at job start Mon Mar 30 2020 03:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00199 * 2 1 4 4 C 1.52995 * 109.47251 * 183.34495 * 3 2 1 5 5 N 1.46904 * 109.46786 * 64.60039 * 4 3 2 6 6 C 1.46898 * 111.00232 * 75.79063 * 5 4 3 7 7 C 1.52992 * 109.47193 * 189.99782 * 6 5 4 8 8 C 1.53001 * 109.47255 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47224 * 179.97438 * 8 7 6 10 10 H 1.07996 * 119.99947 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99677 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00374 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99711 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47202 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47183 * 119.99886 * 13 11 9 16 16 H 1.48504 * 109.47456 * 240.00208 * 13 11 9 17 17 C 1.46900 * 110.99471 * 199.73875 * 5 4 3 18 18 C 1.53005 * 117.49909 * 135.62499 * 17 5 4 19 19 C 1.52999 * 59.99919 * 252.51071 * 18 17 5 20 20 H 1.08996 * 109.47619 * 59.99844 * 1 2 3 21 21 H 1.09001 * 109.46915 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47206 * 299.99541 * 1 2 3 23 23 H 1.09006 * 109.46791 * 63.34615 * 3 2 1 24 24 H 1.08995 * 109.46676 * 303.34923 * 3 2 1 25 25 H 1.09002 * 109.46845 * 184.59547 * 4 3 2 26 26 H 1.08993 * 109.47191 * 304.59932 * 4 3 2 27 27 H 1.09004 * 109.46904 * 309.99750 * 6 5 4 28 28 H 1.08998 * 109.47293 * 69.99245 * 6 5 4 29 29 H 1.09004 * 109.47169 * 299.99806 * 7 6 5 30 30 H 1.08998 * 109.47439 * 59.99552 * 7 6 5 31 31 H 1.09004 * 109.47229 * 300.00205 * 8 7 6 32 32 H 1.09001 * 109.47349 * 59.99911 * 8 7 6 33 33 H 0.96998 * 119.99941 * 179.97438 * 12 11 9 34 34 H 1.09002 * 115.55549 * 281.32823 * 17 5 4 35 35 H 1.09003 * 117.49183 * 359.97438 * 18 17 5 36 36 H 1.08993 * 117.50461 * 145.01555 * 18 17 5 37 37 H 1.09004 * 117.49397 * 252.50763 * 19 18 17 38 38 H 1.08998 * 117.52254 * 107.48267 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5332 1.1856 -0.0842 5 7 3.9066 0.5849 -1.3717 6 6 3.7804 1.5593 -2.4637 7 6 3.9327 0.8427 -3.8068 8 6 3.8006 1.8575 -4.9442 9 6 3.9513 1.1517 -6.2672 10 1 4.1236 0.0860 -6.2941 11 6 3.8692 1.8668 -7.4432 12 7 3.6598 3.1647 -7.4104 13 14 4.0552 0.9919 -9.0831 14 1 4.2820 -0.4569 -8.8483 15 1 2.8194 1.1763 -9.8856 16 1 5.2129 1.5606 -9.8191 17 6 5.2647 0.0273 -1.3182 18 6 5.4844 -1.3576 -1.9304 19 6 5.4964 -1.1824 -0.4105 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.7369 1.8249 0.9185 24 1 1.6420 1.8671 -0.8584 25 1 3.9807 2.1762 -0.0020 26 1 3.8936 0.5555 0.7289 27 1 2.8009 2.0350 -2.4147 28 1 4.5576 2.3172 -2.3660 29 1 4.9123 0.3670 -3.8558 30 1 3.1556 0.0848 -3.9045 31 1 2.8209 2.3329 -4.8950 32 1 4.5776 2.6158 -4.8467 33 1 3.6024 3.6677 -8.2378 34 1 6.0742 0.7516 -1.4078 35 1 4.6211 -1.8550 -2.3725 36 1 6.4385 -1.5445 -2.4231 37 1 6.4585 -1.2541 0.0967 38 1 4.6413 -1.5643 0.1472 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049579462.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:30 Heat of formation + Delta-G solvation = -49.570238 kcal Electronic energy + Delta-G solvation = -16037.897808 eV Core-core repulsion = 13494.179074 eV Total energy + Delta-G solvation = -2543.718734 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = -0.46 seconds Orbital eigenvalues (eV) -39.87357 -38.36644 -36.21817 -35.08816 -33.29577 -30.29893 -28.06657 -26.86926 -24.90979 -23.39747 -22.75617 -22.11895 -20.96395 -18.50589 -17.39227 -17.31831 -16.70434 -16.53468 -16.26203 -15.87136 -15.17479 -14.89741 -14.56877 -14.20107 -13.69954 -13.42999 -13.14406 -12.98002 -12.69688 -12.61794 -12.41284 -12.27805 -12.18990 -11.79350 -11.67743 -11.39937 -11.16295 -11.06309 -10.86030 -10.55166 -10.48371 -9.20172 -8.20363 -6.30999 1.39328 1.39637 1.53541 2.40793 2.82300 2.94729 2.99464 3.12650 4.04245 4.09563 4.13175 4.21265 4.24900 4.33206 4.42962 4.51448 4.57913 4.59673 4.70889 4.75535 4.78127 4.85009 4.89344 4.98765 5.01905 5.11665 5.17896 5.25938 5.38997 5.53774 5.76062 5.86578 6.09793 6.26433 6.29670 6.40332 6.85544 7.38070 8.91938 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.005875 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.624924 B = 4765.091752 C = 5292.956061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.065 3.935 4 C 0.056 3.944 5 N -0.512 5.512 6 C 0.070 3.930 7 C -0.082 4.082 8 C 0.026 3.974 9 C -0.540 4.540 10 H 0.056 0.944 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.965 3.035 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.276 1.276 17 C -0.009 4.009 18 C -0.170 4.170 19 C -0.146 4.146 20 H 0.034 0.966 21 H 0.092 0.908 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.026 0.974 29 H 0.050 0.950 30 H 0.042 0.958 31 H -0.010 1.010 32 H -0.010 1.010 33 H 0.264 0.736 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 -5.611 16.946 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.011 4.011 4 C -0.071 4.071 5 N -0.237 5.237 6 C -0.057 4.057 7 C -0.120 4.120 8 C -0.011 4.011 9 C -0.578 4.578 10 H 0.075 0.925 11 C -0.198 4.198 12 N -0.575 5.575 13 Si 0.789 3.211 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.117 4.117 18 C -0.207 4.207 19 C -0.183 4.183 20 H 0.052 0.948 21 H 0.110 0.890 22 H 0.073 0.927 23 H 0.092 0.908 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.008 0.992 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.133 0.867 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.999 -6.015 16.766 17.840 hybrid contribution 0.235 0.962 -1.071 1.459 sum -0.764 -5.053 15.695 16.506 Atomic orbital electron populations 1.22843 0.80497 1.03355 1.00226 1.87920 1.20420 1.28231 1.95401 1.22640 0.93439 0.84789 1.00279 1.22168 0.94191 0.99049 0.91693 1.61736 1.23319 1.34999 1.03611 1.22039 0.99965 0.92765 0.90948 1.21285 1.00277 0.97757 0.92638 1.18979 0.94581 0.94273 0.93280 1.21695 1.48784 0.94802 0.92492 0.92530 1.25978 0.94776 0.95600 1.03463 1.70100 1.50902 1.07920 1.28551 0.85401 0.77930 0.78983 0.78758 1.18734 1.20232 1.20167 1.22409 0.90156 0.91259 1.07894 1.23000 1.02618 0.98642 0.96478 1.23042 1.03465 0.99140 0.92671 0.94774 0.88982 0.92674 0.90798 0.94415 0.92318 0.89074 0.91704 0.95544 0.93107 0.93941 0.99186 0.99139 0.92754 0.89999 0.89952 0.88211 0.86726 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.40 -11.06 10.64 -148.98 -1.59 -12.64 16 3 C 0.07 1.59 6.13 71.98 0.44 2.03 16 4 C 0.06 1.40 5.34 86.30 0.46 1.86 16 5 N -0.51 -16.00 4.50 -871.00 -3.92 -19.92 16 6 C 0.07 2.59 4.78 86.30 0.41 3.01 16 7 C -0.08 -3.63 5.02 30.59 0.15 -3.48 16 8 C 0.03 1.46 4.97 29.85 0.15 1.61 16 9 C -0.54 -31.97 9.11 25.60 0.23 -31.73 16 10 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 11 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 12 N -0.93 -58.04 13.29 21.45 0.28 -57.76 16 13 Si 0.96 45.36 29.54 68.60 2.03 47.39 16 14 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 17 C -0.01 -0.24 4.22 44.92 0.19 -0.05 16 18 C -0.17 -4.69 9.52 30.60 0.29 -4.40 16 19 C -0.15 -3.30 9.66 30.59 0.30 -3.00 16 20 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 21 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 23 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 24 H 0.04 1.02 6.67 -2.39 -0.02 1.00 16 25 H 0.06 1.33 8.00 -2.39 -0.02 1.32 16 26 H 0.09 2.05 7.19 -2.39 -0.02 2.04 16 27 H 0.06 2.40 6.57 -2.38 -0.02 2.38 16 28 H 0.03 0.97 8.12 -2.39 -0.02 0.95 16 29 H 0.05 2.23 6.73 -2.38 -0.02 2.21 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H -0.01 -0.61 8.14 -2.38 -0.02 -0.62 16 32 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.11 2.01 8.14 -2.38 -0.02 2.00 16 38 H 0.10 2.24 8.02 -2.39 -0.02 2.22 16 Total: -1.00 -67.30 311.44 2.13 -65.17 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.99 Total: 9.68 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 4.34 Total: -31.92 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -3.64 Total: -77.68 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -1.59 Total: -12.64 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -67.30 2.13 -65.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579462.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.599 kcal (2) G-P(sol) polarization free energy of solvation -67.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.46 seconds