Wall clock time and date at job start Mon Mar 30 2020 04:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30537 * 1 3 3 Si 1.86805 * 120.00022 * 2 1 4 4 H 1.48495 * 109.47434 * 240.00198 * 3 2 1 5 5 H 1.48508 * 109.46735 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.99904 * 3 2 1 7 7 C 1.40345 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99871 * 180.02562 * 7 2 1 9 9 C 1.41811 * 119.99910 * 359.97438 * 7 2 1 10 10 O 1.21777 * 119.99762 * 359.73096 * 9 7 2 11 11 C 1.47756 * 120.00284 * 179.97438 * 9 7 2 12 12 C 1.39809 * 120.14645 * 359.45369 * 11 9 7 13 13 C 1.37829 * 119.89489 * 179.69509 * 12 11 9 14 14 C 1.38485 * 120.22208 * 0.60327 * 13 12 11 15 15 C 1.38553 * 120.30990 * 359.67223 * 14 13 12 16 16 F 1.35097 * 119.95343 * 179.97438 * 15 14 13 17 17 C 1.38306 * 120.09094 * 0.02562 * 15 14 13 18 18 Cl 1.73598 * 120.10779 * 179.97438 * 17 15 14 19 19 H 0.97000 * 119.99861 * 359.97438 * 1 2 3 20 20 H 1.07988 * 120.05330 * 0.02562 * 12 11 9 21 21 H 1.08003 * 119.89038 * 180.29700 * 13 12 11 22 22 H 1.07999 * 119.84570 * 179.69266 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6178 0.0000 4 1 3.0931 1.6965 -1.2125 5 1 1.2743 2.7465 0.0006 6 1 3.0931 1.6965 1.2125 7 6 2.0071 -1.2154 -0.0005 8 1 3.0871 -1.2153 -0.0001 9 6 1.2981 -2.4435 -0.0005 10 8 0.0804 -2.4435 0.0049 11 6 2.0369 -3.7231 -0.0017 12 6 3.4349 -3.7268 -0.0143 13 6 4.1188 -4.9234 -0.0089 14 6 3.4258 -6.1224 -0.0037 15 6 2.0403 -6.1292 0.0030 16 9 1.3716 -7.3030 0.0076 17 6 1.3410 -4.9359 0.0040 18 17 -0.3949 -4.9439 0.0118 19 1 -0.4850 0.8401 0.0004 20 1 3.9781 -2.7935 -0.0228 21 1 5.1989 -4.9261 -0.0138 22 1 3.9679 -7.0565 -0.0046 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165249675.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:32 Heat of formation + Delta-G solvation = -64.215560 kcal Electronic energy + Delta-G solvation = -13112.934482 eV Core-core repulsion = 10380.611593 eV Total energy + Delta-G solvation = -2732.322888 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 228.009 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.53426 -38.64654 -36.18725 -35.58948 -32.76705 -30.51668 -29.93869 -26.85811 -23.31772 -22.03618 -20.00848 -17.44548 -16.42716 -15.83217 -15.52632 -15.32474 -15.13651 -13.92678 -13.58174 -13.24101 -12.79455 -12.54963 -11.71242 -11.55920 -11.41019 -11.13533 -10.95842 -10.83135 -10.46837 -10.28853 -10.05862 -9.04804 -8.23593 -8.14314 -7.41833 -6.35661 -4.99004 1.41494 1.52647 2.88116 3.01842 3.08326 3.09602 3.72909 3.93664 4.45901 4.54500 5.07882 5.39116 5.58970 5.66653 5.67931 6.13652 6.34020 6.49784 6.64506 6.87084 7.15058 7.23977 7.91429 8.68468 8.70078 10.21989 10.43032 Molecular weight = 228.01amu Principal moments of inertia in cm(-1) A = 0.039376 B = 0.009296 C = 0.007541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.924416 B = 3011.308650 C = 3712.383078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.730 5.730 2 C 0.079 3.921 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.511 4.511 8 H 0.075 0.925 9 C 0.378 3.622 10 O -0.511 6.511 11 C -0.070 4.070 12 C -0.095 4.095 13 C -0.106 4.106 14 C -0.158 4.158 15 C 0.086 3.914 16 F -0.139 7.139 17 C -0.054 4.054 18 Cl -0.028 7.028 19 H 0.276 0.724 20 H 0.144 0.856 21 H 0.130 0.870 22 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.019 -5.805 -0.025 9.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.542 4.542 8 H 0.093 0.907 9 C 0.272 3.728 10 O -0.398 6.398 11 C -0.072 4.072 12 C -0.114 4.114 13 C -0.125 4.125 14 C -0.177 4.177 15 C 0.066 3.934 16 F -0.117 7.117 17 C -0.082 4.082 18 Cl 0.001 6.999 19 H 0.087 0.913 20 H 0.161 0.839 21 H 0.148 0.852 22 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.040 -5.806 -0.022 8.378 hybrid contribution 0.411 0.438 0.002 0.600 sum 6.451 -5.368 -0.019 8.392 Atomic orbital electron populations 1.69940 1.07507 1.28414 1.29941 1.25977 0.94679 1.00971 0.92875 0.86401 0.80085 0.80469 0.79860 1.18867 1.20224 1.18874 1.20858 0.94847 0.91364 1.47129 0.90733 1.18088 0.88870 0.85056 0.80803 1.90609 1.14196 1.87608 1.47436 1.21904 0.94322 0.96704 0.94283 1.21621 0.93247 0.98501 0.98027 1.21017 0.99937 0.91643 0.99873 1.20999 0.91219 0.99759 1.05724 1.17432 0.90152 0.79994 1.05830 1.91468 1.80772 1.45315 1.94179 1.21307 0.87357 0.93049 1.06534 1.98377 1.06526 1.98679 1.96308 0.91266 0.83880 0.85173 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.30 11.73 55.57 0.65 -19.65 14 2 C 0.08 2.03 5.50 -17.31 -0.10 1.94 14 3 Si 0.91 18.48 29.56 -169.99 -5.03 13.46 14 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 14 5 H -0.28 -5.55 7.11 56.52 0.40 -5.14 14 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 14 7 C -0.51 -13.34 8.86 -37.42 -0.33 -13.67 14 8 H 0.07 1.72 6.02 -52.49 -0.32 1.40 14 9 C 0.38 10.29 6.91 -34.33 -0.24 10.05 14 10 O -0.51 -15.48 12.52 5.12 0.06 -15.41 14 11 C -0.07 -1.60 5.89 -104.83 -0.62 -2.21 14 12 C -0.10 -1.76 9.44 -39.14 -0.37 -2.13 14 13 C -0.11 -1.60 10.03 -39.64 -0.40 -1.99 14 14 C -0.16 -2.44 10.02 -39.37 -0.39 -2.84 14 15 C 0.09 1.61 7.27 -39.44 -0.29 1.32 14 16 F -0.14 -2.53 16.83 2.25 0.04 -2.49 14 17 C -0.05 -1.19 6.36 -38.96 -0.25 -1.44 14 18 Cl -0.03 -0.65 25.68 -51.86 -1.33 -1.98 14 19 H 0.28 6.93 8.29 -40.82 -0.34 6.59 14 20 H 0.14 2.45 6.20 -52.49 -0.33 2.13 14 21 H 0.13 1.45 8.06 -52.48 -0.42 1.02 14 22 H 0.13 1.61 8.06 -52.49 -0.42 1.19 14 LS Contribution 224.55 15.07 3.38 3.38 Total: -1.00 -30.30 224.55 -5.82 -36.12 By element: Atomic # 1 Polarization: -1.85 SS G_CDS: -0.62 Total: -2.47 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -2.98 Total: -10.96 kcal Atomic # 7 Polarization: -20.30 SS G_CDS: 0.65 Total: -19.65 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.06 Total: -15.41 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.46 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.33 Total: -1.98 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -30.30 -5.82 -36.12 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165249675.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.099 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds