Wall clock time and date at job start Mon Mar 30 2020 04:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86800 * 119.99948 * 2 1 4 4 H 1.48503 * 109.46950 * 274.97696 * 3 2 1 5 5 H 1.48498 * 109.47450 * 34.97713 * 3 2 1 6 6 H 1.48498 * 109.47114 * 154.97841 * 3 2 1 7 7 C 1.39851 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99684 * 186.01481 * 7 2 1 9 9 C 1.41424 * 120.00176 * 6.02083 * 7 2 1 10 10 C 1.42120 * 126.57330 * 174.33146 * 9 7 2 11 11 C 1.34499 * 105.19381 * 179.83884 * 10 9 7 12 12 N 1.35848 * 109.12977 * 0.76800 * 11 10 9 13 13 N 1.30744 * 108.00813 * 358.91010 * 12 11 10 14 14 C 1.47007 * 116.87537 * 178.34948 * 12 11 10 15 15 C 1.54405 * 111.17865 * 21.10030 * 14 12 11 16 16 S 1.77560 * 142.95469 * 181.33727 * 11 10 9 17 17 O 1.42101 * 105.65011 * 280.39147 * 16 11 10 18 18 O 1.42096 * 105.64794 * 51.01451 * 16 11 10 19 19 H 0.96998 * 119.99993 * 0.02562 * 1 2 3 20 20 H 1.07995 * 127.40533 * 359.81256 * 10 9 7 21 21 H 1.09003 * 109.14449 * 141.55442 * 14 12 11 22 22 H 1.08997 * 109.14337 * 260.74992 * 14 12 11 23 23 H 1.09001 * 111.29637 * 90.35150 * 15 14 12 24 24 H 1.09003 * 111.29504 * 214.95330 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3853 2.1071 -1.3948 5 1 1.4970 2.6201 0.8026 6 1 3.5892 1.4121 0.5922 7 6 2.0082 -1.2112 0.0005 8 1 3.0837 -1.2137 0.0986 9 6 1.3069 -2.4326 -0.1274 10 6 1.8781 -3.7276 -0.2563 11 6 0.8312 -4.5675 -0.3434 12 7 -0.3210 -3.8498 -0.2914 13 7 -0.0056 -2.5888 -0.1506 14 6 -1.5784 -4.6019 -0.4109 15 6 -1.3742 -6.0903 -0.0545 16 16 0.3995 -6.2834 -0.4921 17 8 0.5688 -6.6036 -1.8662 18 8 1.1230 -6.9508 0.5327 19 1 -0.4850 0.8400 -0.0004 20 1 2.9273 -3.9824 -0.2797 21 1 -2.3182 -4.1710 0.2637 22 1 -1.9432 -4.5279 -1.4354 23 1 -1.5418 -6.2697 1.0075 24 1 -2.0055 -6.7342 -0.6669 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214878958.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:42 Heat of formation + Delta-G solvation = -6.455851 kcal Electronic energy + Delta-G solvation = -13738.910326 eV Core-core repulsion = 11166.888850 eV Total energy + Delta-G solvation = -2572.021477 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 228.035 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.44239 -38.26653 -37.12382 -36.35741 -34.76484 -31.17339 -30.68781 -27.76221 -25.08493 -22.44987 -21.85260 -20.13842 -18.85524 -17.99934 -17.54452 -16.86296 -16.64525 -16.10597 -15.93812 -14.93202 -14.82117 -14.37056 -13.82354 -13.36487 -13.30139 -13.21232 -13.07194 -12.73480 -12.62301 -12.27726 -11.86497 -11.56292 -11.24552 -10.59160 -9.92928 -9.60400 -8.40853 -6.38685 -1.04096 0.93077 1.38476 1.41900 1.56363 1.58000 1.84759 2.23751 2.30852 2.46290 3.02441 3.32343 3.48365 3.94946 4.15330 4.41425 4.52701 4.61925 4.93651 5.00262 5.30998 5.57807 6.11150 6.48652 6.78575 7.04326 7.93631 8.59862 Molecular weight = 228.04amu Principal moments of inertia in cm(-1) A = 0.060347 B = 0.007916 C = 0.007345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.871148 B = 3536.079496 C = 3811.171182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.024 3.976 3 Si 0.991 3.009 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.488 4.488 8 H 0.088 0.912 9 C 0.150 3.850 10 C -0.188 4.188 11 C -0.545 4.545 12 N -0.351 5.351 13 N -0.316 5.316 14 C 0.102 3.898 15 C -0.527 4.527 16 S 2.509 3.491 17 O -0.953 6.953 18 O -0.956 6.956 19 H 0.276 0.724 20 H 0.146 0.854 21 H 0.128 0.872 22 H 0.119 0.881 23 H 0.185 0.815 24 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.937 -9.676 0.024 11.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.191 4.191 3 Si 0.812 3.188 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.527 4.527 8 H 0.106 0.894 9 C 0.000 4.000 10 C -0.222 4.222 11 C -0.750 4.750 12 N -0.140 5.140 13 N -0.148 5.148 14 C -0.019 4.019 15 C -0.662 4.662 16 S 2.686 3.314 17 O -0.950 6.950 18 O -0.952 6.952 19 H 0.086 0.914 20 H 0.164 0.836 21 H 0.146 0.854 22 H 0.136 0.864 23 H 0.203 0.797 24 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -6.804 -9.770 -0.168 11.907 hybrid contribution 0.911 1.401 0.130 1.676 sum -5.892 -8.369 -0.038 10.235 Atomic orbital electron populations 1.70059 1.08643 1.28952 1.37321 1.26755 0.95751 1.04243 0.92353 0.85058 0.78921 0.75901 0.78890 1.19241 1.19593 1.17949 1.18977 0.94565 0.88944 1.50166 0.89357 1.20044 0.88475 0.93997 0.97484 1.21323 0.98368 0.92312 1.10211 1.33739 0.94673 1.23082 1.23488 1.47645 1.05298 1.05006 1.56067 1.74698 1.16967 0.95319 1.27857 1.22155 0.83669 0.88964 1.07070 1.30652 1.18777 1.00023 1.16707 1.05608 0.80603 0.71100 0.74054 1.93580 1.86304 1.81757 1.33310 1.93545 1.71119 1.71602 1.58978 0.91420 0.83586 0.85395 0.86351 0.79703 0.76276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.28 12.00 21.81 0.26 -47.02 14 2 C 0.02 1.29 5.49 85.22 0.47 1.76 14 3 Si 0.99 41.28 29.56 68.60 2.03 43.30 14 4 H -0.27 -10.78 7.11 99.48 0.71 -10.07 14 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 14 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 14 7 C -0.49 -28.45 9.41 23.45 0.22 -28.23 14 8 H 0.09 4.84 7.85 -2.91 -0.02 4.81 14 9 C 0.15 8.85 6.76 40.84 0.28 9.12 14 10 C -0.19 -9.76 10.98 22.38 0.25 -9.51 14 11 C -0.55 -24.08 7.59 83.22 0.63 -23.45 14 12 N -0.35 -15.57 4.15 -340.46 -1.41 -16.98 14 13 N -0.32 -17.99 10.51 -51.97 -0.55 -18.53 14 14 C 0.10 2.67 7.36 86.76 0.64 3.31 14 15 C -0.53 -7.93 7.75 72.46 0.56 -7.37 14 16 S 2.51 74.10 6.21 -56.49 -0.35 73.75 14 17 O -0.95 -32.86 18.02 -127.82 -2.30 -35.16 14 18 O -0.96 -33.17 18.02 -127.82 -2.30 -35.47 14 19 H 0.28 14.45 8.30 -92.71 -0.77 13.68 14 20 H 0.15 6.86 8.06 -2.91 -0.02 6.83 14 21 H 0.13 2.96 8.14 -2.39 -0.02 2.94 14 22 H 0.12 2.63 8.14 -2.39 -0.02 2.61 14 23 H 0.19 1.79 8.14 -2.39 -0.02 1.77 14 24 H 0.22 0.81 8.14 -2.39 -0.02 0.79 14 Total: -1.00 -86.30 231.89 -0.36 -86.66 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 1.23 Total: 3.83 kcal Atomic # 6 Polarization: -57.42 SS G_CDS: 3.04 Total: -54.38 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -1.70 Total: -82.54 kcal Atomic # 8 Polarization: -66.03 SS G_CDS: -4.61 Total: -70.63 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 74.10 SS G_CDS: -0.35 Total: 73.75 kcal Total: -86.30 -0.36 -86.66 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214878958.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.204 kcal (2) G-P(sol) polarization free energy of solvation -86.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds