Wall clock time and date at job start Mon Mar 30 2020 04:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86806 * 120.00096 * 2 1 4 4 H 1.48503 * 109.46545 * 274.98806 * 3 2 1 5 5 H 1.48497 * 109.47070 * 34.97975 * 3 2 1 6 6 H 1.48493 * 109.47485 * 154.98459 * 3 2 1 7 7 C 1.40047 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99660 * 186.54949 * 7 2 1 9 9 C 1.39860 * 120.00169 * 6.54634 * 7 2 1 10 10 S 1.75557 * 125.37692 * 353.33617 * 9 7 2 11 11 C 1.76500 * 91.29974 * 179.97438 * 10 9 7 12 12 C 1.34962 * 110.45665 * 0.02728 * 11 10 9 13 13 C 1.37672 * 125.37739 * 173.02882 * 9 7 2 14 14 Cl 1.73602 * 122.57041 * 0.02562 * 13 9 7 15 15 C 1.52847 * 109.61097 * 179.97438 * 12 11 10 16 16 C 1.54099 * 105.07747 * 17.69636 * 15 12 11 17 17 C 1.52229 * 139.12017 * 180.02562 * 11 10 9 18 18 H 0.96996 * 119.99838 * 0.02562 * 1 2 3 19 19 H 1.08997 * 110.32080 * 136.59452 * 15 12 11 20 20 H 1.08998 * 110.32428 * 258.69836 * 15 12 11 21 21 H 1.09004 * 110.94701 * 91.28187 * 16 15 12 22 22 H 1.09004 * 110.94857 * 214.94512 * 16 15 12 23 23 H 1.08996 * 110.35118 * 281.29784 * 17 11 10 24 24 H 1.09006 * 110.34786 * 43.58015 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3850 2.1072 -1.3948 5 1 1.4971 2.6200 0.8026 6 1 3.5892 1.4122 0.5920 7 6 2.0092 -1.2129 0.0005 8 1 3.0839 -1.2158 0.1072 9 6 1.3168 -2.4202 -0.1370 10 16 -0.4301 -2.5939 -0.1533 11 6 -0.2947 -4.3420 -0.3557 12 6 1.0023 -4.7125 -0.4007 13 6 1.8974 -3.6594 -0.2870 14 17 3.6180 -3.8869 -0.3248 15 6 1.0971 -6.2280 -0.5754 16 6 -0.2937 -6.6613 -1.0781 17 6 -1.1997 -5.5581 -0.4947 18 1 -0.4850 0.8400 -0.0004 19 1 1.8605 -6.4771 -1.3125 20 1 1.3223 -6.7057 0.3781 21 1 -0.3313 -6.6625 -2.1675 22 1 -0.5648 -7.6391 -0.6798 23 1 -1.5843 -5.8578 0.4801 24 1 -2.0216 -5.3429 -1.1777 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214921404.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:42 Heat of formation + Delta-G solvation = -21.661111 kcal Electronic energy + Delta-G solvation = -11439.663624 eV Core-core repulsion = 9275.399211 eV Total energy + Delta-G solvation = -2164.264413 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 228.007 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.47086 -36.94139 -36.17858 -34.01180 -30.04507 -28.80640 -26.18225 -22.65944 -21.81418 -19.54450 -18.87560 -17.12088 -16.86132 -16.22556 -15.27931 -14.66470 -13.99802 -13.79699 -13.55743 -13.48759 -12.96948 -12.77233 -12.37691 -12.06713 -11.98838 -11.90536 -11.84363 -11.65542 -11.20002 -10.92255 -10.84896 -9.17642 -8.86345 -8.52185 -6.46416 0.73619 1.30175 1.35828 1.47483 1.52324 1.90140 2.08339 2.15415 2.63561 3.00785 3.99777 4.06615 4.27811 4.62324 4.88003 4.97820 4.98335 5.06012 5.17218 5.26341 5.45671 5.54317 5.82869 6.04848 6.14396 6.43039 6.57954 8.01944 Molecular weight = 228.01amu Principal moments of inertia in cm(-1) A = 0.035135 B = 0.010804 C = 0.008363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.745301 B = 2590.934190 C = 3347.103122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.018 3.982 3 Si 1.005 2.995 4 H -0.259 1.259 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.408 4.408 8 H 0.096 0.904 9 C 0.009 3.991 10 S 0.146 5.854 11 C -0.393 4.393 12 C -0.077 4.077 13 C -0.267 4.267 14 Cl -0.113 7.113 15 C -0.054 4.054 16 C -0.105 4.105 17 C -0.019 4.019 18 H 0.309 0.691 19 H 0.061 0.939 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.100 0.900 23 H 0.065 0.935 24 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 -3.126 -0.745 3.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.201 4.201 3 Si 0.824 3.176 4 H -0.183 1.183 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.443 4.443 8 H 0.114 0.886 9 C -0.112 4.112 10 S 0.407 5.593 11 C -0.509 4.509 12 C -0.088 4.088 13 C -0.299 4.299 14 Cl -0.085 7.085 15 C -0.093 4.093 16 C -0.143 4.143 17 C -0.058 4.058 18 H 0.122 0.878 19 H 0.080 0.920 20 H 0.090 0.910 21 H 0.090 0.910 22 H 0.118 0.882 23 H 0.083 0.917 24 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.156 -2.062 -0.623 3.048 hybrid contribution 1.799 -0.165 -0.056 1.807 sum -0.358 -2.227 -0.679 2.355 Atomic orbital electron populations 1.68880 1.08808 1.32291 1.32993 1.27125 0.95858 1.05485 0.91591 0.84790 0.78808 0.74200 0.79800 1.18345 1.18132 1.18099 1.19419 0.96261 0.89498 1.39072 0.88630 1.21656 0.95975 0.95422 0.98102 1.84325 1.03102 0.95816 1.76047 1.26410 0.98933 1.00641 1.24928 1.19918 0.92316 0.95721 1.00863 1.19248 0.82037 0.93189 1.35470 1.98117 1.14734 1.97241 1.98454 1.20972 0.98528 0.89048 1.00750 1.22241 0.93039 0.98403 1.00638 1.20474 0.95782 0.89542 0.99995 0.87828 0.91998 0.90988 0.91030 0.88174 0.91689 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.57 10.69 21.85 0.23 -38.34 14 2 C 0.02 0.84 5.49 85.27 0.47 1.30 14 3 Si 1.01 35.82 29.57 68.60 2.03 37.85 14 4 H -0.26 -8.95 7.11 99.48 0.71 -8.24 14 5 H -0.26 -8.49 7.11 99.48 0.71 -7.79 14 6 H -0.26 -9.12 7.11 99.48 0.71 -8.41 14 7 C -0.41 -21.36 8.97 23.10 0.21 -21.15 14 8 H 0.10 4.94 7.34 -2.91 -0.02 4.91 14 9 C 0.01 0.48 6.15 22.53 0.14 0.62 14 10 S 0.15 7.41 20.29 -56.49 -1.15 6.27 14 11 C -0.39 -18.25 7.36 25.42 0.19 -18.06 14 12 C -0.08 -3.65 6.38 -19.82 -0.13 -3.78 14 13 C -0.27 -13.85 6.41 22.24 0.14 -13.71 14 14 Cl -0.11 -5.26 28.30 -2.72 -0.08 -5.34 14 15 C -0.05 -1.98 6.81 30.92 0.21 -1.77 14 16 C -0.10 -3.16 7.10 31.38 0.22 -2.94 14 17 C -0.02 -0.66 6.80 30.75 0.21 -0.45 14 18 H 0.31 13.11 8.30 -92.71 -0.77 12.34 14 19 H 0.06 2.19 8.14 -2.39 -0.02 2.17 14 20 H 0.07 2.49 8.14 -2.39 -0.02 2.47 14 21 H 0.07 2.05 8.14 -2.38 -0.02 2.03 14 22 H 0.10 2.31 8.14 -2.38 -0.02 2.29 14 23 H 0.06 2.15 8.14 -2.39 -0.02 2.13 14 24 H 0.06 2.01 8.14 -2.38 -0.02 1.99 14 Total: -1.00 -57.50 236.12 3.91 -53.59 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.21 Total: 5.90 kcal Atomic # 6 Polarization: -61.59 SS G_CDS: 1.66 Total: -59.93 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.23 Total: -38.34 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Atomic # 16 Polarization: 7.41 SS G_CDS: -1.15 Total: 6.27 kcal Atomic # 17 Polarization: -5.26 SS G_CDS: -0.08 Total: -5.34 kcal Total: -57.50 3.91 -53.59 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214921404.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.927 kcal (2) G-P(sol) polarization free energy of solvation -57.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds