Wall clock time and date at job start Mon Mar 30 2020 03:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47377 * 2 1 4 4 H 1.09007 * 109.46786 * 305.64169 * 3 2 1 5 5 C 1.50697 * 109.47310 * 185.64736 * 3 2 1 6 6 H 1.07998 * 120.00025 * 239.72186 * 5 3 2 7 7 C 1.37877 * 120.00047 * 59.99817 * 5 3 2 8 8 N 1.31514 * 119.99953 * 359.72172 * 7 5 3 9 9 Si 1.86799 * 119.99946 * 179.72840 * 7 5 3 10 10 H 1.48498 * 109.47585 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47395 * 120.00134 * 9 7 5 12 12 H 1.48499 * 109.47114 * 239.99711 * 9 7 5 13 13 N 1.46897 * 109.47456 * 65.64242 * 3 2 1 14 14 N 1.45390 * 111.00220 * 206.14400 * 13 3 2 15 15 C 1.46960 * 110.99905 * 247.10590 * 14 13 3 16 16 C 1.53051 * 109.36529 * 176.81295 * 15 14 13 17 17 N 1.46954 * 109.36581 * 58.40041 * 16 15 14 18 18 C 1.46893 * 111.00221 * 176.80995 * 17 16 15 19 19 C 1.46960 * 110.87996 * 300.68103 * 17 16 15 20 20 C 1.46961 * 111.00208 * 123.30970 * 14 13 3 21 21 H 1.08997 * 109.47228 * 173.52348 * 1 2 3 22 22 H 1.09003 * 109.47158 * 293.52899 * 1 2 3 23 23 H 1.09004 * 109.46779 * 53.52413 * 1 2 3 24 24 H 1.09002 * 109.47200 * 240.00196 * 2 1 3 25 25 H 1.09000 * 109.47181 * 119.99899 * 2 1 3 26 26 H 0.97009 * 119.99988 * 180.02562 * 8 7 5 27 27 H 1.00904 * 110.99514 * 330.09881 * 13 3 2 28 28 H 1.09002 * 109.48598 * 296.77758 * 15 14 13 29 29 H 1.08994 * 109.48938 * 56.84326 * 15 14 13 30 30 H 1.09003 * 109.48690 * 298.43303 * 16 15 14 31 31 H 1.09002 * 109.50377 * 178.37805 * 16 15 14 32 32 H 1.09000 * 109.47393 * 183.80008 * 18 17 16 33 33 H 1.09003 * 109.47265 * 303.80476 * 18 17 16 34 34 H 1.09010 * 109.47225 * 63.79957 * 18 17 16 35 35 H 1.08995 * 109.48495 * 299.35033 * 19 17 16 36 36 H 1.09000 * 109.50604 * 179.29525 * 19 17 16 37 37 H 1.09000 * 109.48459 * 303.15051 * 20 14 13 38 38 H 1.08996 * 109.48912 * 63.21564 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5966 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1398 6 1 4.1539 1.8904 0.6293 7 6 4.1301 0.8830 -1.2524 8 7 3.3833 0.3403 -2.1890 9 14 5.9897 0.8926 -1.4293 10 1 6.5959 1.5585 -0.2485 11 1 6.4856 -0.5042 -1.5192 12 1 6.3659 1.6317 -2.6611 13 7 1.6648 2.0946 1.2617 14 7 1.5590 3.5348 1.0925 15 6 2.6112 4.2322 1.8449 16 6 2.5143 5.7361 1.5778 17 7 1.1825 6.2162 1.9721 18 6 1.0756 7.6713 1.8013 19 6 0.1303 5.5188 1.2197 20 6 0.2272 4.0150 1.4869 21 1 -0.3633 -1.0211 -0.1159 22 1 -0.3633 0.4103 0.9422 23 1 -0.3633 0.6110 -0.8264 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.7981 -0.0553 -2.9716 27 1 0.8066 1.7093 1.6265 28 1 2.4823 4.0431 2.9106 29 1 3.5880 3.8685 1.5262 30 1 2.6702 5.9276 0.5161 31 1 3.2755 6.2585 2.1572 32 1 0.1046 8.0092 2.1633 33 1 1.8661 8.1628 2.3685 34 1 1.1768 7.9215 0.7452 35 1 0.2592 5.7079 0.1541 36 1 -0.8467 5.8825 1.5381 37 1 -0.5340 3.4929 0.9072 38 1 0.0713 3.8234 2.5485 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215042945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:28 Heat of formation + Delta-G solvation = 38.362445 kcal Electronic energy + Delta-G solvation = -16744.973136 eV Core-core repulsion = 14237.360201 eV Total energy + Delta-G solvation = -2507.612935 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -38.69608 -36.00647 -33.80363 -31.67843 -30.58440 -29.61747 -27.09582 -25.47591 -23.21874 -23.02928 -22.29747 -19.48471 -19.32534 -16.39115 -15.96614 -14.98150 -14.81478 -14.71986 -14.45125 -14.16173 -13.78061 -13.18740 -12.79927 -12.50642 -12.26406 -11.98493 -11.86489 -11.53004 -11.16365 -10.93320 -10.86891 -10.70350 -10.61379 -10.54497 -9.88102 -9.77567 -9.64957 -9.17527 -8.35040 -8.25464 -8.13213 -6.97548 -5.89597 -3.90940 3.35655 3.43315 3.48104 4.07241 4.12432 4.53505 5.08684 5.17403 5.38609 5.40581 5.46111 5.60471 5.71224 5.76828 5.80478 5.83639 6.00382 6.10295 6.14077 6.17298 6.23948 6.40462 6.45982 6.65194 6.85434 7.10708 7.14380 7.16645 7.26246 7.56422 7.60237 7.87758 7.97017 8.37721 8.54212 8.82941 9.15193 9.71804 11.16897 Molecular weight = 227.17amu Principal moments of inertia in cm(-1) A = 0.025865 B = 0.008339 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.265450 B = 3356.976912 C = 4157.313852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.227 3.773 4 H 0.016 0.984 5 C -0.478 4.478 6 H 0.059 0.941 7 C 0.052 3.948 8 N -0.899 5.899 9 Si 0.893 3.107 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.524 5.524 14 N -0.374 5.374 15 C 0.076 3.924 16 C 0.056 3.944 17 N -0.547 5.547 18 C 0.026 3.974 19 C 0.063 3.937 20 C 0.035 3.965 21 H 0.038 0.962 22 H 0.032 0.968 23 H 0.043 0.957 24 H 0.104 0.896 25 H 0.040 0.960 26 H 0.257 0.743 27 H 0.310 0.690 28 H 0.034 0.966 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.024 0.976 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.668 8.833 6.144 12.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.119 3.881 4 H 0.034 0.966 5 C -0.517 4.517 6 H 0.077 0.923 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.722 3.278 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.246 5.246 14 N -0.189 5.189 15 C -0.053 4.053 16 C -0.073 4.073 17 N -0.272 5.272 18 C -0.122 4.122 19 C -0.067 4.067 20 C -0.095 4.095 21 H 0.057 0.943 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.122 0.878 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.127 0.873 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.979 8.760 6.199 11.830 hybrid contribution 0.042 0.036 -0.698 0.700 sum -4.937 8.795 5.501 11.489 Atomic orbital electron populations 1.21883 0.99628 0.99788 0.99411 1.21835 0.91239 1.00407 1.03250 1.19195 0.95528 0.88630 0.84745 0.96616 1.21161 0.91106 1.35311 1.04109 0.92268 1.24923 0.97900 0.95986 0.95914 1.69875 1.34412 1.39960 1.09757 0.86510 0.86042 0.77449 0.77782 1.19875 1.21275 1.21361 1.64233 1.34595 0.93413 1.32376 1.65358 1.00841 0.99589 1.53081 1.22006 0.96952 0.90471 0.95822 1.22263 0.89745 0.96006 0.99250 1.62195 1.03965 1.04368 1.56636 1.22321 1.02173 0.88301 0.99443 1.22098 0.94627 0.93630 0.96308 1.22515 0.93301 0.94710 0.98967 0.94308 0.94924 0.93743 0.87826 0.94155 0.93280 0.87276 0.94793 0.89229 0.93922 0.90592 0.91736 0.91571 0.95743 0.94011 0.90852 0.91024 0.94322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.63 37.16 0.36 -2.55 16 2 C -0.13 -3.02 5.35 -26.73 -0.14 -3.16 16 3 C 0.23 5.72 2.26 -68.87 -0.16 5.56 16 4 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 5 C -0.48 -13.28 8.84 -34.44 -0.30 -13.58 16 6 H 0.06 1.67 7.23 -52.49 -0.38 1.30 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.84 11.28 55.43 0.63 -25.22 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 N -0.52 -11.48 6.54 -5.65 -0.04 -11.52 16 14 N -0.37 -7.50 4.78 -113.63 -0.54 -8.04 16 15 C 0.08 1.42 6.07 -3.76 -0.02 1.40 16 16 C 0.06 0.87 5.62 -3.77 -0.02 0.85 16 17 N -0.55 -7.83 4.97 -242.76 -1.21 -9.03 16 18 C 0.03 0.29 9.60 60.06 0.58 0.87 16 19 C 0.06 0.90 5.62 -3.77 -0.02 0.88 16 20 C 0.03 0.58 5.57 -3.77 -0.02 0.56 16 21 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.03 0.56 6.68 -51.93 -0.35 0.22 16 23 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.10 2.75 5.93 -51.93 -0.31 2.44 16 25 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.31 6.23 5.99 -174.66 -1.05 5.19 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.85 7.55 -51.93 -0.39 1.45 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.02 0.27 8.14 -51.92 -0.42 -0.15 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 297.85 15.07 4.49 4.49 Total: -1.00 -29.00 297.85 -9.06 -38.06 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.52 Total: 2.34 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 0.15 Total: -7.80 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -1.16 Total: -53.81 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.00 -9.06 -38.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215042945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.427 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds