Wall clock time and date at job start Mon Mar 30 2020 03:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47377 * 2 1 4 4 H 1.09007 * 109.46786 * 305.64169 * 3 2 1 5 5 C 1.50697 * 109.47310 * 185.64736 * 3 2 1 6 6 H 1.07998 * 120.00025 * 239.72186 * 5 3 2 7 7 C 1.37877 * 120.00047 * 59.99817 * 5 3 2 8 8 N 1.31514 * 119.99953 * 359.72172 * 7 5 3 9 9 Si 1.86799 * 119.99946 * 179.72840 * 7 5 3 10 10 H 1.48498 * 109.47585 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47395 * 120.00134 * 9 7 5 12 12 H 1.48499 * 109.47114 * 239.99711 * 9 7 5 13 13 N 1.46897 * 109.47456 * 65.64242 * 3 2 1 14 14 N 1.45390 * 111.00220 * 206.14400 * 13 3 2 15 15 C 1.46960 * 110.99905 * 247.10590 * 14 13 3 16 16 C 1.53051 * 109.36529 * 176.81295 * 15 14 13 17 17 N 1.46954 * 109.36581 * 58.40041 * 16 15 14 18 18 C 1.46893 * 111.00221 * 176.80995 * 17 16 15 19 19 C 1.46960 * 110.87996 * 300.68103 * 17 16 15 20 20 C 1.46961 * 111.00208 * 123.30970 * 14 13 3 21 21 H 1.08997 * 109.47228 * 173.52348 * 1 2 3 22 22 H 1.09003 * 109.47158 * 293.52899 * 1 2 3 23 23 H 1.09004 * 109.46779 * 53.52413 * 1 2 3 24 24 H 1.09002 * 109.47200 * 240.00196 * 2 1 3 25 25 H 1.09000 * 109.47181 * 119.99899 * 2 1 3 26 26 H 0.97009 * 119.99988 * 180.02562 * 8 7 5 27 27 H 1.00904 * 110.99514 * 330.09881 * 13 3 2 28 28 H 1.09002 * 109.48598 * 296.77758 * 15 14 13 29 29 H 1.08994 * 109.48938 * 56.84326 * 15 14 13 30 30 H 1.09003 * 109.48690 * 298.43303 * 16 15 14 31 31 H 1.09002 * 109.50377 * 178.37805 * 16 15 14 32 32 H 1.09000 * 109.47393 * 183.80008 * 18 17 16 33 33 H 1.09003 * 109.47265 * 303.80476 * 18 17 16 34 34 H 1.09010 * 109.47225 * 63.79957 * 18 17 16 35 35 H 1.08995 * 109.48495 * 299.35033 * 19 17 16 36 36 H 1.09000 * 109.50604 * 179.29525 * 19 17 16 37 37 H 1.09000 * 109.48459 * 303.15051 * 20 14 13 38 38 H 1.08996 * 109.48912 * 63.21564 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5966 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1398 6 1 4.1539 1.8904 0.6293 7 6 4.1301 0.8830 -1.2524 8 7 3.3833 0.3403 -2.1890 9 14 5.9897 0.8926 -1.4293 10 1 6.5959 1.5585 -0.2485 11 1 6.4856 -0.5042 -1.5192 12 1 6.3659 1.6317 -2.6611 13 7 1.6648 2.0946 1.2617 14 7 1.5590 3.5348 1.0925 15 6 2.6112 4.2322 1.8449 16 6 2.5143 5.7361 1.5778 17 7 1.1825 6.2162 1.9721 18 6 1.0756 7.6713 1.8013 19 6 0.1303 5.5188 1.2197 20 6 0.2272 4.0150 1.4869 21 1 -0.3633 -1.0211 -0.1159 22 1 -0.3633 0.4103 0.9422 23 1 -0.3633 0.6110 -0.8264 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.7981 -0.0553 -2.9716 27 1 0.8066 1.7093 1.6265 28 1 2.4823 4.0431 2.9106 29 1 3.5880 3.8685 1.5262 30 1 2.6702 5.9276 0.5161 31 1 3.2755 6.2585 2.1572 32 1 0.1046 8.0092 2.1633 33 1 1.8661 8.1628 2.3685 34 1 1.1768 7.9215 0.7452 35 1 0.2592 5.7079 0.1541 36 1 -0.8467 5.8825 1.5381 37 1 -0.5340 3.4929 0.9072 38 1 0.0713 3.8234 2.5485 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215042945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:27 Heat of formation + Delta-G solvation = 17.899209 kcal Electronic energy + Delta-G solvation = -16745.860489 eV Core-core repulsion = 14237.360201 eV Total energy + Delta-G solvation = -2508.500288 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.01976 -37.69855 -35.42074 -33.67293 -31.89538 -31.16364 -28.76781 -27.06466 -24.70160 -24.49010 -23.81812 -21.35397 -20.72240 -18.32634 -17.62381 -16.74701 -16.24416 -15.97902 -15.86129 -15.58615 -15.30216 -14.82564 -14.57524 -14.09670 -13.56066 -13.43878 -13.10349 -13.05912 -12.77873 -12.72137 -12.51275 -12.24656 -12.17524 -11.96242 -11.81711 -11.56876 -11.51227 -11.05750 -10.40483 -9.95614 -9.36475 -8.67959 -8.03143 -6.12078 1.41051 1.42770 1.54530 2.43104 2.62709 2.96706 3.24511 3.80643 4.09565 4.15157 4.32287 4.32853 4.46926 4.49459 4.56570 4.63775 4.65021 4.69949 4.72968 4.80943 4.91823 5.01800 5.04709 5.10882 5.14378 5.28534 5.38796 5.66038 5.78953 5.82883 5.96157 6.09537 6.19731 6.38058 6.62010 6.94784 7.13057 7.54540 9.01558 Molecular weight = 227.17amu Principal moments of inertia in cm(-1) A = 0.025865 B = 0.008339 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.265450 B = 3356.976912 C = 4157.313852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.238 3.762 4 H -0.025 1.025 5 C -0.495 4.495 6 H 0.047 0.953 7 C 0.007 3.993 8 N -0.923 5.923 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.284 1.284 13 N -0.527 5.527 14 N -0.396 5.396 15 C 0.080 3.920 16 C 0.065 3.935 17 N -0.552 5.552 18 C 0.026 3.974 19 C 0.067 3.933 20 C 0.036 3.964 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.035 0.965 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.259 0.741 27 H 0.321 0.679 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.027 0.973 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.029 0.971 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.260 9.933 7.191 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.163 4.163 3 C 0.130 3.870 4 H -0.007 1.007 5 C -0.534 4.534 6 H 0.065 0.935 7 C -0.190 4.190 8 N -0.564 5.564 9 Si 0.781 3.219 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.210 1.210 13 N -0.249 5.249 14 N -0.211 5.211 15 C -0.049 4.049 16 C -0.064 4.064 17 N -0.277 5.277 18 C -0.122 4.122 19 C -0.062 4.062 20 C -0.093 4.093 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.138 0.862 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.586 9.870 7.263 13.467 hybrid contribution 0.193 -0.254 -0.991 1.040 sum -5.393 9.617 6.272 12.685 Atomic orbital electron populations 1.21738 0.96242 1.01220 1.00309 1.21651 0.94291 0.98827 1.01522 1.18896 0.94074 0.89382 0.84655 1.00715 1.21405 0.92626 1.35354 1.04046 0.93522 1.25636 1.02073 0.95676 0.95647 1.70005 1.35979 1.40359 1.10064 0.85563 0.81070 0.77625 0.77677 1.19542 1.20556 1.21039 1.64041 1.35482 0.95056 1.30340 1.65294 1.03074 0.98263 1.54453 1.21939 0.95193 0.92398 0.95388 1.22150 0.91537 0.93960 0.98735 1.62220 1.02906 1.06226 1.56317 1.22415 1.03865 0.86093 0.99796 1.22106 0.96232 0.92151 0.95733 1.22582 0.91225 0.96292 0.99207 0.92192 0.92652 0.94548 0.90946 0.94335 0.93226 0.86158 0.94772 0.92228 0.95462 0.88341 0.89814 0.90244 0.95819 0.95304 0.87780 0.90786 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 9.63 71.98 0.69 -4.51 16 2 C -0.12 -5.89 5.35 30.60 0.16 -5.73 16 3 C 0.24 12.34 2.26 44.17 0.10 12.44 16 4 H -0.02 -1.47 8.05 -2.38 -0.02 -1.48 16 5 C -0.50 -28.26 8.84 25.60 0.23 -28.04 16 6 H 0.05 2.72 7.23 -2.91 -0.02 2.70 16 7 C 0.01 0.39 5.29 84.65 0.45 0.84 16 8 N -0.92 -54.17 11.28 21.45 0.24 -53.93 16 9 Si 0.95 45.20 29.54 68.60 2.03 47.23 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 13 N -0.53 -23.28 6.54 -171.80 -1.12 -24.40 16 14 N -0.40 -15.91 4.78 -513.43 -2.45 -18.36 16 15 C 0.08 2.97 6.07 86.31 0.52 3.49 16 16 C 0.07 1.96 5.62 86.31 0.49 2.45 16 17 N -0.55 -14.49 4.97 -921.94 -4.58 -19.06 16 18 C 0.03 0.50 9.60 127.69 1.23 1.73 16 19 C 0.07 1.79 5.62 86.31 0.49 2.28 16 20 C 0.04 1.15 5.57 86.31 0.48 1.63 16 21 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.05 1.82 6.68 -2.39 -0.02 1.81 16 23 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.07 3.93 5.93 -2.39 -0.01 3.92 16 25 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 27 H 0.32 12.68 5.99 -204.85 -1.23 11.45 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 2.54 7.55 -2.39 -0.02 2.52 16 30 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 2.49 8.13 -2.39 -0.02 2.47 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.35 8.13 -2.39 -0.02 1.33 16 34 H 0.02 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -63.29 297.85 -1.27 -64.57 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -0.22 Total: 17.39 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 4.83 Total: -13.42 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -7.91 Total: -115.76 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -63.29 -1.27 -64.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215042945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.466 kcal (2) G-P(sol) polarization free energy of solvation -63.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds