Wall clock time and date at job start Mon Mar 30 2020 03:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 111.00508 * 2 1 4 4 C 1.46907 * 110.99916 * 123.95375 * 2 1 3 5 5 C 1.53002 * 109.47221 * 66.04177 * 4 2 1 6 6 N 1.46894 * 109.47050 * 180.02562 * 5 4 2 7 7 C 1.46956 * 111.00196 * 66.05103 * 6 5 4 8 8 C 1.53051 * 109.36265 * 183.18598 * 7 6 5 9 9 N 1.46950 * 109.36695 * 301.59619 * 8 7 6 10 10 C 1.46956 * 110.88187 * 59.32281 * 9 8 7 11 11 C 1.46963 * 110.99746 * 189.84983 * 6 5 4 12 12 H 1.09003 * 109.48613 * 296.77787 * 11 6 5 13 13 C 1.50700 * 109.49191 * 56.84363 * 11 6 5 14 14 H 1.07997 * 119.99726 * 359.97438 * 13 11 6 15 15 C 1.37873 * 119.99719 * 180.02562 * 13 11 6 16 16 N 1.31513 * 120.00287 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99739 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47201 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47184 * 119.99686 * 17 15 13 20 20 H 1.48498 * 109.47369 * 240.00118 * 17 15 13 21 21 H 1.09001 * 109.46956 * 296.04986 * 1 2 3 22 22 H 1.08998 * 109.47013 * 56.04244 * 1 2 3 23 23 H 1.08996 * 109.47638 * 176.04750 * 1 2 3 24 24 H 1.08994 * 109.47039 * 183.95164 * 3 2 1 25 25 H 1.08996 * 109.46716 * 303.95410 * 3 2 1 26 26 H 1.09000 * 109.46667 * 63.95415 * 3 2 1 27 27 H 1.09001 * 109.46894 * 306.04234 * 4 2 1 28 28 H 1.08994 * 109.47065 * 186.04009 * 4 2 1 29 29 H 1.09000 * 109.46619 * 60.00145 * 5 4 2 30 30 H 1.08999 * 109.47082 * 300.00628 * 5 4 2 31 31 H 1.09000 * 109.48237 * 303.15282 * 7 6 5 32 32 H 1.08994 * 109.48936 * 63.21821 * 7 6 5 33 33 H 1.09003 * 109.49056 * 61.56379 * 8 7 6 34 34 H 1.09004 * 109.48450 * 181.62376 * 8 7 6 35 35 H 1.00899 * 111.00412 * 183.19266 * 9 8 7 36 36 H 1.08994 * 109.48748 * 60.64632 * 10 9 8 37 37 H 1.09003 * 109.49140 * 180.69625 * 10 9 8 38 38 H 0.97004 * 119.99776 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6313 -2.2427 0.9705 6 7 2.1572 -3.0085 2.1083 7 6 1.4869 -2.6225 3.3578 8 6 2.1163 -3.3832 4.5273 9 7 1.9928 -4.8284 4.2915 10 6 2.6632 -5.2144 3.0420 11 6 2.0337 -4.4538 1.8725 12 1 0.9799 -4.7201 1.7905 13 6 2.7456 -4.8174 0.5949 14 1 3.2400 -4.0518 0.0156 15 6 2.7646 -6.1274 0.1653 16 7 2.1621 -7.0596 0.8707 17 14 3.6464 -6.5780 -1.4186 18 1 4.2386 -5.3564 -2.0203 19 1 4.7232 -7.5573 -1.1244 20 1 2.6778 -7.1784 -2.3708 21 1 -0.3633 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3634 -1.0252 -0.0708 24 1 3.0828 1.3431 -0.0708 25 1 1.5899 1.9162 -0.8524 26 1 1.7045 1.8723 0.9233 27 1 1.5611 -0.3872 2.0628 28 1 3.0796 -0.6612 1.1756 29 1 2.0657 -2.6214 0.0453 30 1 0.5470 -2.3475 0.9324 31 1 1.6031 -1.5504 3.5166 32 1 0.4269 -2.8681 3.2927 33 1 3.1701 -3.1168 4.6093 34 1 1.6015 -3.1201 5.4514 35 1 2.3540 -5.3545 5.0731 36 1 3.7231 -4.9689 3.1072 37 1 2.5472 -6.2866 2.8833 38 1 2.1753 -7.9812 0.5681 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219564622.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:11 Heat of formation + Delta-G solvation = -2.746866 kcal Electronic energy + Delta-G solvation = -16783.703501 eV Core-core repulsion = 14274.307932 eV Total energy + Delta-G solvation = -2509.395569 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.07251 -38.24635 -35.26424 -34.91037 -31.45736 -30.28430 -28.46579 -27.37689 -26.16760 -23.87792 -23.41858 -21.52814 -20.48132 -18.66217 -17.51089 -16.51480 -16.46168 -16.30388 -15.82959 -15.41106 -15.32739 -14.95061 -14.65141 -14.35999 -13.81999 -13.74195 -13.22974 -12.86602 -12.70622 -12.57352 -12.56330 -12.48221 -12.38807 -12.04292 -11.96092 -11.74670 -11.22951 -10.89508 -10.55795 -9.33317 -9.25079 -8.94569 -8.13134 -6.25421 1.41100 1.42925 1.55491 2.41655 2.87521 3.13015 3.52460 3.56669 4.08905 4.12581 4.23523 4.30016 4.46042 4.48645 4.50137 4.60474 4.68646 4.72478 4.75538 4.83408 4.95922 4.99989 5.02540 5.04537 5.12277 5.20301 5.44978 5.63525 5.68359 6.01677 6.10564 6.15799 6.27006 6.36027 6.67286 6.75646 6.89974 7.43922 8.93059 Molecular weight = 227.17amu Principal moments of inertia in cm(-1) A = 0.019856 B = 0.009694 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.827754 B = 2887.806619 C = 4007.083218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.567 5.567 3 C 0.029 3.971 4 C 0.076 3.924 5 C 0.075 3.925 6 N -0.542 5.542 7 C 0.054 3.946 8 C 0.064 3.936 9 N -0.704 5.704 10 C 0.083 3.917 11 C 0.231 3.769 12 H -0.040 1.040 13 C -0.522 4.522 14 H 0.059 0.941 15 C 0.014 3.986 16 N -0.917 5.917 17 Si 0.960 3.040 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.281 1.281 21 H 0.030 0.970 22 H 0.083 0.917 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.031 0.969 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.009 0.991 31 H 0.091 0.909 32 H 0.013 0.987 33 H 0.031 0.969 34 H 0.098 0.902 35 H 0.341 0.659 36 H 0.001 0.999 37 H 0.078 0.922 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.902 12.753 2.861 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.292 5.292 3 C -0.119 4.119 4 C -0.052 4.052 5 C -0.053 4.053 6 N -0.267 5.267 7 C -0.074 4.074 8 C -0.066 4.066 9 N -0.335 5.335 10 C -0.047 4.047 11 C 0.124 3.876 12 H -0.023 1.023 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.185 4.185 16 N -0.556 5.556 17 Si 0.786 3.214 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.207 1.207 21 H 0.049 0.951 22 H 0.102 0.898 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.027 0.973 31 H 0.109 0.891 32 H 0.031 0.969 33 H 0.049 0.951 34 H 0.116 0.884 35 H 0.159 0.841 36 H 0.019 0.981 37 H 0.096 0.904 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.901 12.507 2.190 12.729 hybrid contribution 0.066 -0.528 0.100 0.541 sum -0.835 11.979 2.289 12.224 Atomic orbital electron populations 1.22417 0.86930 1.01862 1.01135 1.61832 1.08745 1.15046 1.43528 1.22398 1.00939 0.87389 1.01178 1.21945 1.00177 0.92072 0.91035 1.21835 0.95614 0.93087 0.94806 1.62137 1.55855 1.06478 1.02225 1.22234 0.95045 0.99639 0.90506 1.21999 0.98905 0.87831 0.97839 1.60607 1.61630 1.05815 1.05454 1.21889 0.93125 1.01323 0.88365 1.18963 0.92390 0.82810 0.93452 1.02277 1.21414 1.34127 0.93543 1.06993 0.92279 1.25728 0.96102 0.96326 1.00361 1.70026 1.44335 1.01523 1.39764 0.85467 0.78312 0.78200 0.79449 1.19261 1.20315 1.20663 0.95105 0.89823 0.92864 0.91255 0.90046 0.95045 0.94384 0.90744 0.91720 0.97252 0.89099 0.96858 0.95068 0.88412 0.84103 0.98053 0.90434 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.32 127.69 1.19 1.82 16 2 N -0.57 -16.26 5.02 -948.86 -4.76 -21.02 16 3 C 0.03 0.62 9.57 127.69 1.22 1.84 16 4 C 0.08 2.44 4.89 86.30 0.42 2.86 16 5 C 0.08 3.09 4.67 86.31 0.40 3.49 16 6 N -0.54 -24.08 4.52 -874.87 -3.95 -28.04 16 7 C 0.05 2.01 5.41 86.31 0.47 2.48 16 8 C 0.06 2.20 6.72 86.31 0.58 2.78 16 9 N -0.70 -28.73 6.90 -513.44 -3.54 -32.27 16 10 C 0.08 4.14 5.76 86.31 0.50 4.64 16 11 C 0.23 12.31 1.95 44.18 0.09 12.39 16 12 H -0.04 -2.47 8.14 -2.39 -0.02 -2.49 16 13 C -0.52 -29.52 7.80 25.60 0.20 -29.32 16 14 H 0.06 3.36 6.51 -2.91 -0.02 3.34 16 15 C 0.01 0.79 5.30 84.65 0.45 1.24 16 16 N -0.92 -53.50 11.35 21.45 0.24 -53.26 16 17 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 22 H 0.08 1.76 8.12 -2.39 -0.02 1.74 16 23 H 0.05 1.56 6.47 -2.39 -0.02 1.54 16 24 H 0.07 1.45 8.12 -2.39 -0.02 1.43 16 25 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 26 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.04 1.13 6.47 -2.39 -0.02 1.11 16 28 H 0.07 2.45 8.06 -2.39 -0.02 2.43 16 29 H 0.06 3.05 5.99 -2.39 -0.01 3.04 16 30 H 0.01 0.40 6.53 -2.39 -0.02 0.38 16 31 H 0.09 2.81 6.33 -2.39 -0.02 2.79 16 32 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.34 11.96 8.90 -89.69 -0.80 11.16 16 36 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.08 4.33 6.13 -2.39 -0.01 4.31 16 38 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 Total: -1.00 -63.43 291.10 -4.25 -67.67 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.23 Total: 16.25 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 5.52 Total: 4.21 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -12.02 Total: -134.59 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -63.43 -4.25 -67.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219564622.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.928 kcal (2) G-P(sol) polarization free energy of solvation -63.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds