Wall clock time and date at job start Mon Mar 30 2020 04:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86789 * 120.00589 * 2 1 4 4 H 1.48498 * 109.47444 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46930 * 299.99780 * 3 2 1 6 6 H 1.48496 * 109.47436 * 59.99602 * 3 2 1 7 7 C 1.40055 * 119.99473 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00239 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99881 * 0.02562 * 7 2 1 10 10 O 1.21691 * 120.00347 * 0.02562 * 9 7 2 11 11 N 1.34784 * 119.99945 * 180.02562 * 9 7 2 12 12 C 1.46493 * 119.99864 * 179.72843 * 11 9 7 13 13 C 1.50698 * 109.47082 * 180.02562 * 12 11 9 14 14 C 1.32564 * 121.65073 * 115.02131 * 13 12 11 15 15 S 1.77230 * 105.32118 * 179.97438 * 14 13 12 16 16 C 1.72208 * 94.84873 * 0.02562 * 15 14 13 17 17 O 1.21825 * 127.06007 * 180.02562 * 16 15 14 18 18 N 1.34248 * 105.88238 * 359.75992 * 16 15 14 19 19 H 0.96997 * 121.38283 * 180.21591 * 18 16 15 20 20 H 0.97000 * 119.99234 * 0.02562 * 1 2 3 21 21 H 0.97000 * 119.99339 * 0.02562 * 11 9 7 22 22 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 23 23 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 24 24 H 1.08000 * 127.33828 * 359.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6175 0.0000 4 1 3.7008 1.3461 0.0006 5 1 1.8822 2.3962 -1.2125 6 1 1.8822 2.3964 1.2124 7 6 2.0069 -1.2130 0.0005 8 1 3.0869 -1.2131 0.0010 9 6 1.2749 -2.4805 0.0005 10 8 0.0580 -2.4805 -0.0004 11 7 1.9487 -3.6479 0.0016 12 6 1.2161 -4.9164 0.0076 13 6 2.1952 -6.0620 0.0082 14 6 2.2874 -6.8978 1.0330 15 16 3.5508 -8.0555 0.5810 16 6 3.8665 -7.3355 -0.9512 17 8 4.6812 -7.7007 -1.7801 18 7 3.0264 -6.2928 -1.0472 19 1 3.0135 -5.7254 -1.8338 20 1 -0.4849 0.8401 -0.0004 21 1 2.9187 -3.6478 0.0027 22 1 0.5924 -4.9716 0.8999 23 1 0.5863 -4.9767 -0.8801 24 1 1.7146 -6.8774 1.9484 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231705594.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:40 Heat of formation + Delta-G solvation = -75.616090 kcal Electronic energy + Delta-G solvation = -13049.350543 eV Core-core repulsion = 10474.330053 eV Total energy + Delta-G solvation = -2575.020490 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 228.035 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.72428 -39.50074 -38.48110 -35.17067 -34.39578 -31.92039 -29.20704 -27.32495 -24.97182 -22.19383 -21.84905 -19.73754 -18.89392 -18.60073 -17.48456 -17.10435 -16.46686 -16.00463 -15.93204 -15.26687 -15.14441 -14.52360 -14.11362 -13.62389 -13.25016 -13.01222 -12.75600 -12.64270 -12.18015 -11.98337 -11.31201 -10.95322 -10.90366 -9.95004 -9.59710 -9.08383 -8.30788 -6.86829 -0.11513 0.26682 0.72084 1.03779 1.40365 1.42299 1.58709 1.90548 2.24715 2.45546 3.12891 3.57531 3.59783 4.10250 4.49070 4.66129 4.69225 5.20681 5.32191 5.55434 5.83546 6.08891 6.21415 6.27253 6.86516 7.44025 8.44485 8.64340 Molecular weight = 228.04amu Principal moments of inertia in cm(-1) A = 0.051054 B = 0.005661 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.303017 B = 4945.217469 C = 5217.340405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.031 3.969 3 Si 0.994 3.006 4 H -0.250 1.250 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.571 4.571 8 H 0.085 0.915 9 C 0.543 3.457 10 O -0.625 6.625 11 N -0.755 5.755 12 C 0.192 3.808 13 C 0.085 3.915 14 C -0.197 4.197 15 S 0.050 5.950 16 C 0.464 3.536 17 O -0.523 6.523 18 N -0.632 5.632 19 H 0.421 0.579 20 H 0.275 0.725 21 H 0.394 0.606 22 H 0.087 0.913 23 H 0.062 0.938 24 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.830 -10.326 2.723 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.185 4.185 3 Si 0.814 3.186 4 H -0.173 1.173 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.608 4.608 8 H 0.104 0.896 9 C 0.347 3.653 10 O -0.512 6.512 11 N -0.410 5.410 12 C 0.065 3.935 13 C -0.027 4.027 14 C -0.335 4.335 15 S 0.290 5.710 16 C 0.147 3.853 17 O -0.407 6.407 18 N -0.273 5.273 19 H 0.260 0.740 20 H 0.085 0.915 21 H 0.228 0.772 22 H 0.105 0.895 23 H 0.080 0.920 24 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 5.818 -11.647 2.927 13.344 hybrid contribution -0.053 2.054 -1.209 2.384 sum 5.765 -9.593 1.718 11.323 Atomic orbital electron populations 1.70163 1.09337 1.28965 1.36277 1.26895 0.95509 1.04777 0.91286 0.85011 0.79299 0.75756 0.78513 1.17284 1.19521 1.19338 1.21428 0.94694 0.90070 1.54574 0.89645 1.18496 0.86778 0.83953 0.76047 1.90582 1.15923 1.87689 1.57000 1.45856 1.09258 1.04115 1.81808 1.19747 0.91175 0.79432 1.03143 1.19423 0.95367 0.99236 0.88640 1.25526 1.05462 0.98572 1.03988 1.84976 1.38931 1.34395 1.12738 1.21917 0.84484 0.84581 0.94363 1.90964 1.37261 1.66139 1.46336 1.43955 1.33873 1.29180 1.20308 0.73956 0.91480 0.77240 0.89483 0.91979 0.75903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.94 11.83 21.84 0.26 -47.68 14 2 C 0.03 1.65 5.50 85.31 0.47 2.12 14 3 Si 0.99 39.37 29.56 68.60 2.03 41.40 14 4 H -0.25 -9.21 7.11 99.48 0.71 -8.51 14 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 14 6 H -0.27 -10.26 7.11 99.48 0.71 -9.55 14 7 C -0.57 -30.57 9.54 24.83 0.24 -30.33 14 8 H 0.09 4.13 7.85 -2.91 -0.02 4.11 14 9 C 0.54 28.97 7.75 86.36 0.67 29.64 14 10 O -0.63 -38.85 15.02 -4.32 -0.06 -38.91 14 11 N -0.75 -29.61 5.54 -471.13 -2.61 -32.22 14 12 C 0.19 6.00 6.11 85.63 0.52 6.52 14 13 C 0.08 2.03 6.13 40.71 0.25 2.28 14 14 C -0.20 -3.78 11.18 66.67 0.75 -3.03 14 15 S 0.05 1.04 22.97 -56.49 -1.30 -0.25 14 16 C 0.46 12.69 8.85 129.87 1.15 13.84 14 17 O -0.52 -17.78 18.06 -4.75 -0.09 -17.86 14 18 N -0.63 -15.67 5.42 -313.42 -1.70 -17.37 14 19 H 0.42 10.15 8.93 -92.71 -0.83 9.32 14 20 H 0.28 14.59 8.29 -92.71 -0.77 13.82 14 21 H 0.39 13.66 8.44 -92.71 -0.78 12.87 14 22 H 0.09 2.71 7.99 -2.38 -0.02 2.69 14 23 H 0.06 2.08 8.14 -2.38 -0.02 2.06 14 24 H 0.22 2.95 8.06 -2.91 -0.02 2.93 14 Total: -1.00 -72.01 242.48 0.23 -71.78 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.34 Total: 20.08 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 4.04 Total: 21.04 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -4.05 Total: -97.27 kcal Atomic # 8 Polarization: -56.63 SS G_CDS: -0.15 Total: -56.78 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -1.30 Total: -0.25 kcal Total: -72.01 0.23 -71.78 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231705594.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.832 kcal (2) G-P(sol) polarization free energy of solvation -72.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds