Wall clock time and date at job start Mon Mar 30 2020 03:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 110.99755 * 2 1 4 4 C 1.50697 * 109.46940 * 293.94727 * 3 2 1 5 5 H 1.08000 * 119.99974 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99558 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00647 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99681 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47080 * 270.00378 * 8 6 4 10 10 H 1.48504 * 109.47077 * 30.00081 * 8 6 4 11 11 H 1.48496 * 109.47072 * 149.99959 * 8 6 4 12 12 C 1.46900 * 110.99753 * 123.95025 * 2 1 3 13 13 H 1.09002 * 108.85647 * 50.50505 * 12 2 1 14 14 C 1.54070 * 108.87801 * 292.04143 * 12 2 1 15 15 C 1.54065 * 112.81559 * 197.50695 * 14 12 2 16 16 C 1.50476 * 112.50360 * 318.28152 * 15 14 12 17 17 C 1.54245 * 108.52795 * 94.14525 * 16 15 14 18 18 C 1.45541 * 112.40218 * 280.02768 * 17 16 15 19 19 C 1.50473 * 108.87769 * 169.06599 * 12 2 1 20 20 H 1.08997 * 109.63022 * 95.03034 * 19 12 2 21 21 O 1.42904 * 109.62843 * 334.64285 * 19 12 2 22 22 H 1.09008 * 109.47122 * 65.71206 * 1 2 3 23 23 H 1.09000 * 109.47136 * 185.71006 * 1 2 3 24 24 H 1.08999 * 109.47627 * 305.71281 * 1 2 3 25 25 H 1.09001 * 109.46595 * 173.95243 * 3 2 1 26 26 H 1.08994 * 109.47264 * 53.95309 * 3 2 1 27 27 H 0.96996 * 120.00071 * 179.97438 * 7 6 4 28 28 H 1.08998 * 108.81023 * 318.36912 * 14 12 2 29 29 H 1.08998 * 108.81176 * 76.64939 * 14 12 2 30 30 H 1.09005 * 108.88115 * 197.50300 * 15 14 12 31 31 H 1.08998 * 108.80172 * 79.00551 * 15 14 12 32 32 H 1.09003 * 109.62184 * 334.43664 * 16 15 14 33 33 H 1.08994 * 109.62886 * 213.85562 * 16 15 14 34 34 H 1.08994 * 108.89434 * 159.27268 * 17 16 15 35 35 H 1.09002 * 108.81638 * 40.72403 * 17 16 15 36 36 H 1.08998 * 108.89396 * 301.18332 * 18 17 16 37 37 H 1.08997 * 108.81829 * 182.63884 * 18 17 16 38 38 H 0.96700 * 113.99924 * 180.02562 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0741 1.5113 -2.0485 6 6 2.0277 3.3491 -1.5289 7 7 2.7136 4.0013 -0.6158 8 14 1.5828 4.1868 -3.1382 9 1 2.6589 3.9497 -4.1337 10 1 0.3044 3.6301 -3.6492 11 1 1.4314 5.6464 -2.9111 12 6 1.9954 -0.7659 1.1376 13 1 1.5091 -1.7412 1.1609 14 6 1.6633 -0.0144 2.4410 15 6 2.5169 -0.4829 3.6349 16 6 2.6829 -1.9780 3.6726 17 6 3.9992 -2.3432 2.9563 18 6 3.8592 -2.3491 1.5077 19 6 3.4750 -0.9640 0.9483 20 1 4.0199 -0.1860 1.4829 21 8 3.7932 -0.9031 -0.4435 22 1 -0.3634 0.4227 -0.9368 23 1 -0.3633 -1.0226 0.1022 24 1 -0.3634 0.5998 0.8344 25 1 3.0797 1.3444 0.1083 26 1 1.5611 1.9274 0.8308 27 1 2.9888 4.9171 -0.7782 28 1 1.8317 1.0511 2.2850 29 1 0.6110 -0.1707 2.6784 30 1 2.0392 -0.1578 4.5592 31 1 3.5014 -0.0205 3.5657 32 1 1.8446 -2.4524 3.1624 33 1 2.7237 -2.3159 4.7081 34 1 4.3167 -3.3329 3.2843 35 1 4.7637 -1.6175 3.2341 36 1 3.0881 -3.0679 1.2305 37 1 4.8056 -2.6587 1.0642 38 1 4.7328 -1.0237 -0.6377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249956387.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:22 Heat of formation + Delta-G solvation = -73.588455 kcal Electronic energy + Delta-G solvation = -17174.271735 eV Core-core repulsion = 14629.511494 eV Total energy + Delta-G solvation = -2544.760242 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.82714 -37.38735 -36.61870 -34.64070 -32.62724 -30.97607 -29.19909 -26.73311 -25.49399 -24.77360 -22.70992 -21.46411 -19.69560 -18.51598 -18.27676 -16.83106 -16.47685 -15.91032 -15.57114 -15.19007 -15.11720 -14.67086 -14.52234 -14.11054 -13.92389 -13.56297 -13.18928 -12.93056 -12.82742 -12.57785 -12.47743 -12.27427 -11.95171 -11.79895 -11.59061 -11.51693 -11.25266 -11.21802 -10.94846 -10.54800 -10.46914 -8.76910 -8.15811 -6.23936 1.39337 1.41674 1.52324 2.42258 3.15831 3.25267 3.53476 3.74048 3.97014 4.11429 4.13826 4.22989 4.27378 4.38038 4.51894 4.56716 4.71206 4.76527 4.82409 4.94000 5.08028 5.09204 5.15204 5.18636 5.27282 5.31025 5.34054 5.36492 5.40300 5.54029 5.56647 5.69907 6.15277 6.48041 6.75292 6.92822 7.18387 7.44415 8.94783 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038842 B = 0.007533 C = 0.007335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.698008 B = 3716.121281 C = 3816.273357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.531 5.531 3 C 0.223 3.777 4 C -0.518 4.518 5 H 0.054 0.946 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.966 3.034 9 H -0.274 1.274 10 H -0.267 1.267 11 H -0.281 1.281 12 C 0.091 3.909 13 H 0.083 0.917 14 C -0.150 4.150 15 C -0.110 4.110 16 C -0.114 4.114 17 C -0.115 4.115 18 C -0.135 4.135 19 C 0.119 3.881 20 H 0.030 0.970 21 O -0.556 6.556 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.008 0.992 25 H 0.007 0.993 26 H -0.041 1.041 27 H 0.262 0.738 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.515 -12.909 8.123 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.253 5.253 3 C 0.097 3.903 4 C -0.557 4.557 5 H 0.072 0.928 6 C -0.197 4.197 7 N -0.577 5.577 8 Si 0.791 3.209 9 H -0.200 1.200 10 H -0.191 1.191 11 H -0.206 1.206 12 C -0.018 4.018 13 H 0.101 0.899 14 C -0.189 4.189 15 C -0.149 4.149 16 C -0.152 4.152 17 C -0.153 4.153 18 C -0.173 4.173 19 C 0.059 3.941 20 H 0.047 0.953 21 O -0.361 6.361 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.027 0.973 25 H 0.025 0.975 26 H -0.023 1.023 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.090 -12.882 7.656 15.025 hybrid contribution 0.172 1.385 0.003 1.396 sum 1.262 -11.497 7.659 13.872 Atomic orbital electron populations 1.22206 0.88663 1.00263 0.99808 1.62259 1.06829 1.15646 1.40590 1.19229 0.93749 0.83469 0.93845 1.21522 1.34150 0.97341 1.02646 0.92767 1.25865 0.95283 0.98036 1.00560 1.70085 1.39777 1.11765 1.36057 0.85433 0.78845 0.77281 0.79332 1.19957 1.19122 1.20624 1.21685 0.94622 0.97209 0.88274 0.89906 1.22601 1.00457 0.99833 0.96029 1.21287 0.99395 0.97494 0.96674 1.21375 0.97919 0.94436 1.01448 1.20453 0.97741 1.02773 0.94297 1.21095 1.02680 0.96141 0.97400 1.21459 0.94571 0.95901 0.82167 0.95250 1.86859 1.29735 1.95654 1.23820 0.93070 0.90738 0.97347 0.97468 1.02319 0.92915 0.94575 0.91958 0.91365 0.93037 0.91656 0.89771 0.89807 0.92363 0.91451 0.90542 0.77975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 8.89 127.69 1.14 2.76 16 2 N -0.53 -24.61 3.90 -904.31 -3.52 -28.13 16 3 C 0.22 12.49 3.53 85.56 0.30 12.80 16 4 C -0.52 -31.19 8.59 25.60 0.22 -30.97 16 5 H 0.05 3.26 7.10 -2.91 -0.02 3.23 16 6 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 7 N -0.94 -58.31 13.29 21.45 0.28 -58.03 16 8 Si 0.97 46.36 29.54 68.60 2.03 48.39 16 9 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 C 0.09 3.36 1.61 44.46 0.07 3.44 16 13 H 0.08 2.76 6.40 -2.39 -0.02 2.74 16 14 C -0.15 -5.21 4.50 31.32 0.14 -5.07 16 15 C -0.11 -2.92 5.32 30.14 0.16 -2.76 16 16 C -0.11 -2.35 5.61 30.20 0.17 -2.18 16 17 C -0.12 -2.29 5.27 28.74 0.15 -2.14 16 18 C -0.14 -3.25 4.93 28.74 0.14 -3.11 16 19 C 0.12 4.07 2.07 30.20 0.06 4.13 16 20 H 0.03 1.11 6.85 -2.39 -0.02 1.09 16 21 O -0.56 -21.86 11.49 -148.98 -1.71 -23.58 16 22 H 0.05 2.28 7.03 -2.38 -0.02 2.26 16 23 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 24 H 0.01 0.34 7.28 -2.39 -0.02 0.32 16 25 H 0.01 0.44 6.47 -2.39 -0.02 0.42 16 26 H -0.04 -2.45 6.32 -2.39 -0.02 -2.47 16 27 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.04 1.56 5.58 -2.39 -0.01 1.55 16 29 H 0.06 2.03 7.62 -2.39 -0.02 2.02 16 30 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.05 1.45 6.63 -2.39 -0.02 1.43 16 32 H 0.06 1.37 6.97 -2.39 -0.02 1.35 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.20 7.47 -2.39 -0.02 1.18 16 36 H 0.07 1.61 7.47 -2.39 -0.02 1.59 16 37 H 0.08 1.60 8.08 -2.39 -0.02 1.58 16 38 H 0.37 11.14 9.05 -74.06 -0.67 10.47 16 Total: -1.00 -70.42 282.28 0.46 -69.96 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.37 Total: 14.04 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 3.02 Total: -22.66 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -3.24 Total: -86.16 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -1.71 Total: -23.58 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -70.42 0.46 -69.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249956387.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.624 kcal (2) G-P(sol) polarization free energy of solvation -70.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds