Wall clock time and date at job start Mon Mar 30 2020 03:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47015 * 2 1 4 4 C 1.42901 * 114.00009 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.50382 * 30.07581 * 4 3 2 6 6 C 1.53120 * 109.50347 * 270.00091 * 4 3 2 7 7 C 1.53117 * 109.16279 * 182.40659 * 6 4 3 8 8 C 1.53042 * 109.27996 * 57.64936 * 7 6 4 9 9 N 1.46851 * 109.52203 * 300.82529 * 8 7 6 10 10 C 1.46906 * 110.99747 * 185.83943 * 9 8 7 11 11 H 1.09006 * 109.46886 * 296.04252 * 10 9 8 12 12 C 1.53003 * 109.46999 * 176.04769 * 10 9 8 13 13 C 1.50700 * 109.47091 * 56.04235 * 10 9 8 14 14 H 1.07998 * 120.00008 * 5.41292 * 13 10 9 15 15 C 1.37874 * 119.99653 * 185.40905 * 13 10 9 16 16 N 1.31513 * 120.00274 * 9.01077 * 15 13 10 17 17 Si 1.86803 * 119.99864 * 189.00150 * 15 13 10 18 18 H 1.48500 * 109.46814 * 84.98762 * 17 15 13 19 19 H 1.48496 * 109.47174 * 324.99070 * 17 15 13 20 20 H 1.48502 * 109.47176 * 204.98274 * 17 15 13 21 21 C 1.46843 * 111.19853 * 61.73914 * 9 8 7 22 22 H 1.08992 * 109.47069 * 60.00127 * 1 2 3 23 23 H 1.09000 * 109.46847 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47129 * 300.00120 * 1 2 3 25 25 H 1.09001 * 109.47129 * 239.99880 * 2 1 3 26 26 H 1.08997 * 109.47543 * 119.99875 * 2 1 3 27 27 H 1.08995 * 109.52621 * 62.49473 * 6 4 3 28 28 H 1.09005 * 109.52069 * 302.30730 * 6 4 3 29 29 H 1.08999 * 109.50219 * 297.71147 * 7 6 4 30 30 H 1.08991 * 109.54054 * 177.61303 * 7 6 4 31 31 H 1.08993 * 109.46103 * 180.80743 * 8 7 6 32 32 H 1.09000 * 109.45081 * 60.83402 * 8 7 6 33 33 H 1.09004 * 109.46489 * 306.77324 * 12 10 9 34 34 H 1.08992 * 109.47480 * 66.77273 * 12 10 9 35 35 H 1.08993 * 109.46657 * 186.77809 * 12 10 9 36 36 H 0.97003 * 120.00475 * 180.02562 * 16 15 13 37 37 H 1.09007 * 109.46340 * 58.27482 * 21 9 8 38 38 H 1.09008 * 109.45990 * 178.24039 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8637 0.6027 -0.5158 6 6 3.9411 1.5003 1.4426 7 6 5.4614 1.6817 1.4333 8 6 5.8128 2.9636 0.6747 9 7 5.3039 2.8755 -0.7000 10 6 5.7419 4.0282 -1.4984 11 1 5.3106 4.9405 -1.0863 12 6 5.2768 3.8526 -2.9454 13 6 7.2455 4.1223 -1.4619 14 1 7.8232 3.3502 -0.9756 15 6 7.8836 5.1940 -2.0494 16 7 7.1832 6.2188 -2.4840 17 14 9.7431 5.1907 -2.2278 18 1 10.1199 4.4680 -3.4692 19 1 10.3516 4.5118 -1.0557 20 1 10.2359 6.5897 -2.3007 21 6 3.8410 2.7484 -0.7176 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.6887 0.5662 1.9443 28 1 3.4780 2.3346 1.9695 29 1 5.9267 0.8281 0.9404 30 1 5.8263 1.7536 2.4578 31 1 6.8954 3.0881 0.6539 32 1 5.3584 3.8182 1.1760 33 1 5.6081 2.8834 -3.3184 34 1 4.1889 3.9051 -2.9863 35 1 5.7022 4.6441 -3.5623 36 1 7.6320 6.9727 -2.8977 37 1 3.3960 3.6042 -0.2097 38 1 3.4916 2.7168 -1.7496 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250494182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:56 Heat of formation + Delta-G solvation = -74.759241 kcal Electronic energy + Delta-G solvation = -16598.047085 eV Core-core repulsion = 14053.236074 eV Total energy + Delta-G solvation = -2544.811011 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41679 -38.37982 -35.70228 -33.69096 -32.46009 -30.46432 -30.19806 -27.20766 -25.20583 -23.72730 -23.33353 -21.80426 -20.67123 -18.40327 -17.82557 -17.06490 -16.49760 -16.20297 -15.69399 -15.47849 -14.73688 -14.64508 -14.45117 -14.05857 -13.82299 -13.60880 -13.12384 -12.86918 -12.82185 -12.60111 -12.45594 -12.35928 -12.20540 -12.01680 -11.89213 -11.65959 -11.58379 -11.26236 -10.83430 -10.54404 -10.32363 -9.00806 -8.14456 -6.22963 1.43182 1.45069 1.54027 2.40706 2.60407 3.16623 3.48755 3.85017 3.91059 4.11614 4.19580 4.27633 4.35561 4.48071 4.53628 4.61477 4.68138 4.74689 4.81465 4.92464 4.94276 4.97356 5.01039 5.05560 5.08325 5.17496 5.25509 5.30649 5.40647 5.47409 5.70392 5.71016 6.17383 6.31265 6.39098 6.70863 6.91929 7.45288 8.94789 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046715 B = 0.006253 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.237166 B = 4477.012658 C = 4858.907600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 O -0.406 6.406 4 C 0.104 3.896 5 H 0.072 0.928 6 C -0.131 4.131 7 C -0.104 4.104 8 C 0.059 3.941 9 N -0.531 5.531 10 C 0.215 3.785 11 H -0.038 1.038 12 C -0.115 4.115 13 C -0.518 4.518 14 H 0.063 0.937 15 C 0.012 3.988 16 N -0.924 5.924 17 Si 0.960 3.040 18 H -0.274 1.274 19 H -0.266 1.266 20 H -0.287 1.287 21 C 0.059 3.941 22 H 0.054 0.946 23 H 0.093 0.907 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.005 0.995 33 H 0.043 0.957 34 H 0.028 0.972 35 H 0.044 0.956 36 H 0.262 0.738 37 H 0.010 0.990 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.104 -12.375 6.317 16.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 O -0.325 6.325 4 C 0.046 3.954 5 H 0.090 0.910 6 C -0.169 4.169 7 C -0.142 4.142 8 C -0.069 4.069 9 N -0.257 5.257 10 C 0.108 3.892 11 H -0.020 1.020 12 C -0.173 4.173 13 C -0.556 4.556 14 H 0.081 0.919 15 C -0.186 4.186 16 N -0.563 5.563 17 Si 0.785 3.215 18 H -0.199 1.199 19 H -0.190 1.190 20 H -0.212 1.212 21 C -0.070 4.070 22 H 0.074 0.926 23 H 0.112 0.888 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.023 0.977 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.028 0.972 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.028 -12.468 6.024 16.006 hybrid contribution 0.671 1.256 -0.034 1.425 sum -7.357 -11.212 5.991 14.687 Atomic orbital electron populations 1.21759 0.92697 1.03428 1.02564 1.22730 0.96410 0.82799 1.00824 1.87854 1.21057 1.28384 1.95234 1.21922 0.80378 0.97283 0.95858 0.91036 1.22013 0.95997 1.02653 0.96263 1.21532 0.95188 0.97104 1.00366 1.22035 1.00496 0.96385 0.87966 1.61967 1.07918 1.43647 1.12188 1.19058 0.94730 0.85112 0.90267 1.01999 1.21591 0.97008 1.00128 0.98584 1.21341 0.91581 1.06718 1.36008 0.91903 1.25741 1.02888 0.94611 0.95408 1.70104 1.37402 1.07375 1.41432 0.85540 0.80028 0.76981 0.78918 1.19937 1.19030 1.21231 1.21993 0.88959 0.95954 1.00077 0.92636 0.88812 0.92238 0.92964 0.92224 0.89613 0.92565 0.90840 0.89485 0.91120 0.97693 0.93768 0.95331 0.93748 0.92926 0.97187 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 10.28 71.98 0.74 -1.83 16 2 C 0.05 1.05 6.47 71.98 0.47 1.51 16 3 O -0.41 -12.19 9.99 -148.98 -1.49 -13.67 16 4 C 0.10 3.26 2.77 30.65 0.08 3.34 16 5 H 0.07 2.16 7.79 -2.39 -0.02 2.14 16 6 C -0.13 -3.65 5.62 30.67 0.17 -3.48 16 7 C -0.10 -3.08 6.09 30.65 0.19 -2.89 16 8 C 0.06 2.38 5.21 86.33 0.45 2.83 16 9 N -0.53 -23.51 4.52 -875.47 -3.96 -27.46 16 10 C 0.22 11.34 1.93 44.17 0.09 11.43 16 11 H -0.04 -2.27 8.09 -2.38 -0.02 -2.29 16 12 C -0.11 -5.73 8.65 71.98 0.62 -5.11 16 13 C -0.52 -28.76 7.64 25.60 0.20 -28.57 16 14 H 0.06 3.43 6.67 -2.91 -0.02 3.41 16 15 C 0.01 0.69 5.15 84.65 0.44 1.12 16 16 N -0.92 -54.49 12.14 21.45 0.26 -54.23 16 17 Si 0.96 43.79 29.55 68.60 2.03 45.82 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 21 C 0.06 2.32 4.86 86.32 0.42 2.74 16 22 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 25 H 0.05 1.07 8.09 -2.39 -0.02 1.05 16 26 H 0.06 1.10 7.94 -2.39 -0.02 1.08 16 27 H 0.09 1.90 7.94 -2.39 -0.02 1.88 16 28 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.07 3.07 6.14 -2.39 -0.01 3.06 16 32 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 33 H 0.04 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.03 1.28 6.65 -2.39 -0.02 1.27 16 35 H 0.04 2.40 6.75 -2.39 -0.02 2.39 16 36 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 38 H 0.07 2.79 6.15 -2.38 -0.01 2.77 16 Total: -1.00 -62.41 295.99 1.70 -60.71 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.00 Total: 7.73 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 3.86 Total: -18.90 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -3.69 Total: -81.69 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -1.49 Total: -13.67 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -62.41 1.70 -60.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250494182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.052 kcal (2) G-P(sol) polarization free energy of solvation -62.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds