Wall clock time and date at job start Mon Mar 30 2020 03:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46891 * 111.00247 * 2 1 4 4 C 1.46899 * 110.99748 * 123.95894 * 2 1 3 5 5 H 1.08996 * 109.47420 * 27.26210 * 4 2 1 6 6 C 1.53001 * 109.46754 * 267.26430 * 4 2 1 7 7 C 1.50698 * 109.47267 * 66.89473 * 6 4 2 8 8 H 1.08002 * 119.99710 * 5.77247 * 7 6 4 9 9 C 1.37872 * 120.00372 * 185.77714 * 7 6 4 10 10 N 1.31524 * 119.99986 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00401 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47150 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47470 * 119.99664 * 11 9 7 14 14 H 1.48500 * 109.47236 * 240.00095 * 11 9 7 15 15 C 1.53003 * 109.47187 * 147.26953 * 4 2 1 16 16 C 1.53178 * 109.53962 * 294.24885 * 15 4 2 17 17 C 1.53092 * 109.16101 * 176.85144 * 16 15 4 18 18 O 1.42907 * 109.41203 * 302.38407 * 17 16 15 19 19 C 1.42906 * 114.09400 * 61.16536 * 18 17 16 20 20 C 1.53094 * 109.41192 * 298.83591 * 19 18 17 21 21 H 1.08996 * 109.47057 * 307.91410 * 1 2 3 22 22 H 1.09002 * 109.46718 * 67.91024 * 1 2 3 23 23 H 1.08998 * 109.46970 * 187.90683 * 1 2 3 24 24 H 1.08997 * 109.47894 * 175.58734 * 3 2 1 25 25 H 1.09006 * 109.47303 * 295.58953 * 3 2 1 26 26 H 1.09006 * 109.46968 * 55.58749 * 3 2 1 27 27 H 1.08998 * 109.47146 * 186.89675 * 6 4 2 28 28 H 1.09005 * 109.47265 * 306.89164 * 6 4 2 29 29 H 0.96991 * 119.99888 * 179.97438 * 10 9 7 30 30 H 1.08996 * 109.54397 * 174.07345 * 15 4 2 31 31 H 1.08997 * 109.52773 * 56.94417 * 16 15 4 32 32 H 1.09001 * 109.57198 * 296.78414 * 16 15 4 33 33 H 1.09004 * 109.47636 * 182.40906 * 17 16 15 34 34 H 1.08998 * 109.48374 * 62.37329 * 17 16 15 35 35 H 1.09000 * 109.48088 * 58.81956 * 19 18 17 36 36 H 1.08997 * 109.47824 * 178.85665 * 19 18 17 37 37 H 1.09001 * 109.52483 * 297.70648 * 20 19 18 38 38 H 1.09003 * 109.57440 * 177.54569 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7661 1.1375 5 1 1.2728 -1.5288 1.4275 6 6 2.2424 0.1769 2.3168 7 6 0.9248 0.7069 2.8208 8 1 -0.0009 0.3314 2.4100 9 6 0.9009 1.6709 3.8061 10 7 2.0281 2.1278 4.3066 11 14 -0.7324 2.3284 4.4303 12 1 -1.8441 1.6570 3.7100 13 1 -0.8508 2.0588 5.8858 14 1 -0.8008 3.7923 4.1908 15 6 3.3111 -1.4361 0.7361 16 6 3.0421 -2.4851 -0.3472 17 6 4.3723 -3.0941 -0.7982 18 8 5.2330 -2.0567 -1.2727 19 6 5.5575 -1.0723 -0.2889 20 6 4.2749 -0.3821 0.1826 21 1 -0.3633 0.6315 0.8107 22 1 -0.3633 0.3865 -0.9523 23 1 -0.3633 -1.0179 0.1414 24 1 3.0822 1.3434 0.0791 25 1 1.7113 1.8697 -0.9269 26 1 1.5835 1.9187 0.8479 27 1 2.7457 -0.3659 3.1169 28 1 2.8683 1.0083 1.9923 29 1 2.0113 2.8063 4.9995 30 1 3.7558 -1.9172 1.6072 31 1 2.5508 -2.0127 -1.1978 32 1 2.4004 -3.2691 0.0549 33 1 4.1909 -3.8107 -1.5993 34 1 4.8440 -3.6012 0.0435 35 1 6.0446 -1.5530 0.5594 36 1 6.2299 -0.3324 -0.7231 37 1 3.8084 0.1328 -0.6573 38 1 4.5143 0.3388 0.9643 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259647808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:27 Heat of formation + Delta-G solvation = -62.058407 kcal Electronic energy + Delta-G solvation = -17214.672789 eV Core-core repulsion = 14670.412527 eV Total energy + Delta-G solvation = -2544.260261 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.82138 -38.73803 -34.81935 -34.36490 -32.01706 -30.97498 -28.51795 -27.94770 -24.78814 -24.52347 -23.82114 -21.32375 -20.22261 -18.57261 -16.97302 -16.86901 -16.67989 -16.40311 -15.82404 -15.71162 -15.18505 -14.59464 -14.44808 -14.12484 -13.72584 -13.27056 -13.22600 -12.93069 -12.75265 -12.52412 -12.45571 -12.33819 -12.01451 -11.98767 -11.75182 -11.52507 -11.08324 -10.99742 -10.92067 -10.54277 -10.22641 -8.86122 -8.19321 -6.26121 1.33578 1.36055 1.46245 2.37408 3.07613 3.12561 3.39472 3.90494 4.01340 4.15062 4.23767 4.39752 4.50240 4.57754 4.60655 4.71886 4.83273 4.84550 4.85000 4.90333 4.94364 5.07183 5.15042 5.15524 5.19246 5.28362 5.38857 5.44802 5.53355 5.61751 5.65008 5.83019 6.24755 6.36484 6.39443 6.45575 6.88569 7.40302 8.91767 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.040123 B = 0.007727 C = 0.007234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.681589 B = 3622.894324 C = 3869.867047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.518 5.518 3 C 0.014 3.986 4 C 0.097 3.903 5 H 0.053 0.947 6 C 0.005 3.995 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.005 3.995 10 N -0.929 5.929 11 Si 0.948 3.052 12 H -0.264 1.264 13 H -0.282 1.282 14 H -0.282 1.282 15 C -0.072 4.072 16 C -0.134 4.134 17 C 0.060 3.940 18 O -0.400 6.400 19 C 0.064 3.936 20 C -0.147 4.147 21 H 0.025 0.975 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.021 0.979 27 H -0.021 1.021 28 H 0.018 0.982 29 H 0.260 0.740 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.414 -7.029 -9.554 12.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.241 5.241 3 C -0.134 4.134 4 C -0.012 4.012 5 H 0.072 0.928 6 C -0.033 4.033 7 C -0.562 4.562 8 H 0.083 0.917 9 C -0.193 4.193 10 N -0.570 5.570 11 Si 0.774 3.226 12 H -0.188 1.188 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.092 4.092 16 C -0.172 4.172 17 C -0.016 4.016 18 O -0.319 6.319 19 C -0.013 4.013 20 C -0.185 4.185 21 H 0.043 0.957 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.040 0.960 27 H -0.003 1.003 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.127 0.873 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.693 -7.144 -10.058 12.627 hybrid contribution -1.171 1.122 2.059 2.621 sum 1.521 -6.021 -8.000 10.128 Atomic orbital electron populations 1.22536 0.88329 1.01247 1.00638 1.62391 1.07461 1.13277 1.40924 1.22673 1.01110 0.89901 0.99731 1.21664 0.95362 0.94870 0.89307 0.92825 1.19683 0.95968 0.94746 0.92879 1.21733 0.93808 1.21004 1.19619 0.91741 1.25793 0.99181 0.97266 0.97026 1.70092 1.27651 1.30476 1.28753 0.85644 0.80631 0.78140 0.78151 1.18783 1.20841 1.20789 1.21127 0.94864 0.95885 0.97282 1.22069 0.98051 0.97984 0.99068 1.22711 0.89381 0.89400 1.00100 1.87852 1.67693 1.37781 1.38559 1.22634 0.95796 0.90974 0.91851 1.22385 0.96501 0.98421 1.01169 0.95663 0.91126 0.91958 0.90770 0.91931 0.95997 1.00274 0.96373 0.93131 0.92675 0.90837 0.90937 0.87349 0.92978 0.93183 0.87929 0.89889 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 8.94 127.69 1.14 1.88 16 2 N -0.52 -19.26 3.94 -923.29 -3.64 -22.90 16 3 C 0.01 0.54 7.36 127.69 0.94 1.48 16 4 C 0.10 3.87 1.81 44.92 0.08 3.95 16 5 H 0.05 2.20 7.48 -2.39 -0.02 2.19 16 6 C 0.01 0.26 3.56 29.85 0.11 0.36 16 7 C -0.52 -28.26 6.72 25.60 0.17 -28.08 16 8 H 0.06 3.38 5.33 -2.91 -0.02 3.36 16 9 C 0.01 0.29 5.46 84.65 0.46 0.75 16 10 N -0.93 -55.26 13.29 21.45 0.28 -54.97 16 11 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 12 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 15 C -0.07 -2.45 2.09 -10.67 -0.02 -2.47 16 16 C -0.13 -3.74 5.35 30.68 0.16 -3.58 16 17 C 0.06 1.47 6.84 72.01 0.49 1.96 16 18 O -0.40 -11.39 10.77 -148.98 -1.60 -13.00 16 19 C 0.06 1.75 6.84 72.01 0.49 2.24 16 20 C -0.15 -4.79 3.66 30.68 0.11 -4.67 16 21 H 0.02 1.03 5.37 -2.39 -0.01 1.02 16 22 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.06 2.04 7.73 -2.39 -0.02 2.02 16 24 H 0.07 2.82 3.91 -2.39 -0.01 2.81 16 25 H 0.06 2.11 8.14 -2.38 -0.02 2.10 16 26 H 0.02 1.01 5.81 -2.38 -0.01 1.00 16 27 H -0.02 -1.17 8.13 -2.39 -0.02 -1.19 16 28 H 0.02 0.96 4.92 -2.38 -0.01 0.95 16 29 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.05 1.92 8.13 -2.39 -0.02 1.90 16 31 H 0.07 2.21 7.71 -2.39 -0.02 2.19 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.11 2.14 8.14 -2.38 -0.02 2.13 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.08 2.79 5.60 -2.39 -0.01 2.78 16 38 H 0.05 1.95 6.57 -2.39 -0.02 1.93 16 Total: -1.00 -60.77 279.47 2.24 -58.53 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 1.03 Total: 12.63 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 4.14 Total: -26.18 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -3.36 Total: -77.87 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -1.60 Total: -13.00 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -60.77 2.24 -58.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259647808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.527 kcal (2) G-P(sol) polarization free energy of solvation -60.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds