Wall clock time and date at job start Mon Mar 30 2020 04:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00192 * 2 1 4 4 H 1.48499 * 109.47090 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47417 * 300.00047 * 3 2 1 6 6 H 1.48502 * 109.47241 * 60.00236 * 3 2 1 7 7 C 1.37877 * 119.99406 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99432 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00623 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.28651 * 299.32330 * 9 7 2 11 11 C 1.54141 * 110.41725 * 177.12971 * 9 7 2 12 12 C 1.54211 * 101.72039 * 214.47137 * 11 9 7 13 13 C 1.52120 * 104.84784 * 26.46319 * 12 11 9 14 14 S 1.76530 * 139.37337 * 162.59313 * 13 12 11 15 15 C 1.75576 * 91.09614 * 180.02562 * 14 13 12 16 16 Cl 1.73604 * 125.18292 * 180.02562 * 15 14 13 17 17 C 1.32744 * 109.63820 * 359.97438 * 15 14 13 18 18 C 1.33785 * 110.67787 * 342.62428 * 13 12 11 19 19 H 0.97007 * 119.99913 * 359.97438 * 1 2 3 20 20 H 1.09003 * 110.97469 * 332.57407 * 11 9 7 21 21 H 1.08993 * 110.97829 * 96.31906 * 11 9 7 22 22 H 1.09000 * 110.35738 * 267.62170 * 12 11 9 23 23 H 1.09004 * 110.36804 * 145.30823 * 12 11 9 24 24 H 1.07999 * 122.19864 * 179.71550 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6287 -2.5764 0.8911 11 6 2.2315 -3.6863 -0.0735 12 6 1.4345 -4.6994 -0.9199 13 6 0.4987 -3.8496 -1.7662 14 16 -0.4940 -3.9911 -3.2190 15 6 -1.0201 -2.3233 -3.0629 16 17 -2.1103 -1.5130 -4.1439 17 6 -0.4582 -1.7767 -1.9916 18 6 0.3921 -2.6162 -1.2589 19 1 -0.4850 0.8401 0.0004 20 1 3.1551 -3.3990 -0.5761 21 1 2.4377 -4.0837 0.9202 22 1 0.8623 -5.3657 -0.2744 23 1 2.1070 -5.2730 -1.5578 24 1 -0.6399 -0.7510 -1.7066 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259778141.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:31 Heat of formation + Delta-G solvation = 27.235785 kcal Electronic energy + Delta-G solvation = -11636.662485 eV Core-core repulsion = 9474.518401 eV Total energy + Delta-G solvation = -2162.144084 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 228.007 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.48950 -36.18972 -33.45724 -32.68657 -28.05833 -26.63734 -23.94496 -21.44989 -20.06193 -17.86173 -16.64923 -16.10118 -14.71288 -14.32122 -14.08304 -13.24618 -12.66265 -12.27512 -11.97250 -11.79350 -11.12554 -11.07594 -10.70685 -10.67563 -10.59232 -10.53509 -10.03214 -9.87648 -9.49396 -9.20834 -8.46455 -7.62200 -7.25642 -6.14868 -4.20308 1.81191 1.86023 2.71594 2.99945 3.23876 3.32738 3.35515 3.81817 4.34312 5.12989 5.52193 5.70469 5.86986 6.21245 6.27750 6.64951 6.71305 6.76130 6.91477 7.15139 7.45840 7.53627 7.72618 7.83413 8.20078 8.81221 9.43297 10.90573 Molecular weight = 228.01amu Principal moments of inertia in cm(-1) A = 0.024175 B = 0.012515 C = 0.008687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.936455 B = 2236.782614 C = 3222.481154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.093 3.907 10 H 0.048 0.952 11 C -0.112 4.112 12 C -0.033 4.033 13 C -0.243 4.243 14 S 0.064 5.936 15 C -0.176 4.176 16 Cl -0.045 7.045 17 C -0.056 4.056 18 C -0.030 4.030 19 H 0.263 0.737 20 H 0.066 0.934 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 -5.390 -3.822 6.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.072 3.928 10 H 0.065 0.935 11 C -0.151 4.151 12 C -0.073 4.073 13 C -0.359 4.359 14 S 0.326 5.674 15 C -0.317 4.317 16 Cl -0.017 7.017 17 C -0.088 4.088 18 C -0.042 4.042 19 H 0.073 0.927 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.320 -6.337 -4.992 8.174 hybrid contribution 0.394 2.187 0.648 2.315 sum -0.926 -4.150 -4.344 6.078 Atomic orbital electron populations 1.69847 1.05919 1.26623 1.49944 1.24995 0.94927 0.99311 0.94738 0.86503 0.80200 0.83473 0.77735 1.19679 1.20858 1.20881 1.21266 0.93096 0.90017 1.49783 0.91906 1.18455 0.91002 0.93170 0.90134 0.93473 1.22392 0.98769 0.95710 0.98180 1.20725 0.94750 0.96464 0.95328 1.25833 1.08208 1.01501 1.00314 1.83398 1.46501 1.09372 1.28142 1.24711 1.08238 0.97339 1.01413 1.98280 1.62090 1.78200 1.63123 1.21089 0.93061 1.04479 0.90168 1.21020 0.94922 0.89769 0.98491 0.92729 0.91523 0.91823 0.91459 0.92346 0.80205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.60 9.60 55.43 0.53 -23.07 14 2 C 0.06 1.59 5.18 -17.82 -0.09 1.50 14 3 Si 0.89 20.42 29.54 -169.99 -5.02 15.39 14 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 14 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 14 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 14 7 C -0.50 -13.06 8.54 -34.44 -0.29 -13.36 14 8 H 0.06 1.61 7.65 -52.48 -0.40 1.20 14 9 C 0.09 2.21 2.83 -91.28 -0.26 1.96 14 10 H 0.05 1.21 8.14 -51.93 -0.42 0.79 14 11 C -0.11 -2.16 6.60 -25.50 -0.17 -2.33 14 12 C -0.03 -0.58 6.80 -26.55 -0.18 -0.77 14 13 C -0.24 -5.06 7.35 -35.17 -0.26 -5.31 14 14 S 0.06 1.23 23.34 -107.50 -2.51 -1.28 14 15 C -0.18 -3.70 7.06 28.85 0.20 -3.50 14 16 Cl -0.05 -0.83 29.28 -51.86 -1.52 -2.34 14 17 C -0.06 -1.34 9.16 -40.74 -0.37 -1.71 14 18 C -0.03 -0.72 5.57 -104.41 -0.58 -1.30 14 19 H 0.26 6.71 8.31 -40.82 -0.34 6.37 14 20 H 0.07 1.29 7.82 -51.93 -0.41 0.88 14 21 H 0.06 1.09 8.14 -51.93 -0.42 0.67 14 22 H 0.07 1.09 8.14 -51.93 -0.42 0.66 14 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 14 24 H 0.18 4.62 5.35 -52.49 -0.28 4.34 14 LS Contribution 233.84 15.07 3.52 3.52 Total: -1.00 -26.17 233.84 -8.91 -35.08 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: -1.91 Total: -2.49 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -2.00 Total: -24.82 kcal Atomic # 7 Polarization: -23.60 SS G_CDS: 0.53 Total: -23.07 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.51 Total: -1.28 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.52 Total: -2.34 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -26.17 -8.91 -35.08 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778141.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.314 kcal (2) G-P(sol) polarization free energy of solvation -26.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds