Wall clock time and date at job start Mon Mar 30 2020 04:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.75668 * 124.66295 * 2 1 4 4 C 1.75805 * 91.50408 * 179.97438 * 3 2 1 5 5 C 1.39065 * 125.37785 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99389 * 180.02562 * 5 4 3 7 7 C 1.40553 * 120.00076 * 0.02684 * 5 4 3 8 8 N 1.30552 * 119.99989 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99803 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46786 * 60.00232 * 9 7 5 11 11 H 1.48501 * 109.47050 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47416 * 300.00433 * 9 7 5 13 13 C 1.40141 * 109.23997 * 0.26392 * 4 3 2 14 14 C 1.46435 * 123.26093 * 179.71136 * 13 4 3 15 15 O 1.21652 * 119.99317 * 89.99788 * 14 13 4 16 16 O 1.34916 * 120.00572 * 270.00140 * 14 13 4 17 17 C 1.34655 * 124.66596 * 179.97438 * 2 1 3 18 18 O 1.35899 * 122.44908 * 0.02562 * 17 2 1 19 19 H 1.09000 * 109.47240 * 0.02975 * 1 2 3 20 20 H 1.09003 * 109.46334 * 120.02512 * 1 2 3 21 21 H 1.08996 * 109.46886 * 240.02518 * 1 2 3 22 22 H 0.96998 * 119.99941 * 180.02562 * 8 7 5 23 23 H 0.96691 * 114.00639 * 179.97438 * 16 14 13 24 24 H 0.96696 * 114.00623 * 89.97837 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5061 1.4449 0.0000 4 6 3.9779 0.4833 0.0008 5 6 5.2721 0.9921 0.0006 6 1 6.1168 0.3192 0.0007 7 6 5.4808 2.3821 0.0003 8 7 4.4596 3.1955 0.0007 9 14 7.2193 3.0655 0.0009 10 1 7.9364 2.5948 -1.2113 11 1 7.1677 4.5496 0.0011 12 1 7.9357 2.5954 1.2137 13 6 3.6408 -0.8769 -0.0051 14 6 4.6361 -1.9510 -0.0122 15 8 5.0516 -2.4021 1.0384 16 8 5.0924 -2.4402 -1.1839 17 6 2.2729 -1.1075 0.0005 18 8 1.7445 -2.3595 0.0005 19 1 -0.3634 1.0276 -0.0005 20 1 -0.3632 -0.5143 -0.8898 21 1 -0.3633 -0.5134 0.8902 22 1 4.6036 4.1547 0.0002 23 1 5.7465 -3.1458 -1.0875 24 1 1.5915 -2.7220 -0.8828 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260125755.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:58 Heat of formation + Delta-G solvation = -160.893177 kcal Electronic energy + Delta-G solvation = -13607.952018 eV Core-core repulsion = 10996.940884 eV Total energy + Delta-G solvation = -2611.011133 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 228.029 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.04148 -39.26010 -36.88267 -36.67452 -35.10414 -32.42920 -29.55169 -26.44579 -24.74826 -22.04649 -20.89975 -19.56187 -18.86001 -17.90139 -17.44806 -17.41592 -16.16621 -15.77310 -15.56742 -14.68982 -14.31583 -14.01435 -13.77704 -13.42061 -13.40105 -13.19740 -12.44455 -12.40805 -12.23017 -12.06092 -11.87474 -11.30520 -11.19626 -11.00971 -9.39588 -9.00667 -8.74593 -6.71699 0.61813 1.30066 1.33698 1.41672 1.44590 1.49723 1.76425 1.93821 2.11729 2.71151 2.93211 3.79476 4.60254 4.71448 4.79166 4.92076 5.06125 5.20406 5.23163 5.54696 5.63051 5.84676 5.92092 6.15138 6.35630 7.00721 7.16234 7.83575 Molecular weight = 228.03amu Principal moments of inertia in cm(-1) A = 0.025807 B = 0.012589 C = 0.008870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.707685 B = 2223.567251 C = 3156.114839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.404 4.404 3 S 0.169 5.831 4 C 0.038 3.962 5 C -0.391 4.391 6 H 0.089 0.911 7 C 0.022 3.978 8 N -0.776 5.776 9 Si 1.009 2.991 10 H -0.252 1.252 11 H -0.248 1.248 12 H -0.261 1.261 13 C -0.428 4.428 14 C 0.589 3.411 15 O -0.566 6.566 16 O -0.502 6.502 17 C 0.159 3.841 18 O -0.505 6.505 19 H 0.061 0.939 20 H 0.063 0.937 21 H 0.050 0.950 22 H 0.320 0.680 23 H 0.410 0.590 24 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 1.024 -3.997 4.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.520 4.520 3 S 0.428 5.572 4 C -0.083 4.083 5 C -0.426 4.426 6 H 0.107 0.893 7 C -0.200 4.200 8 N -0.401 5.401 9 Si 0.826 3.174 10 H -0.176 1.176 11 H -0.171 1.171 12 H -0.185 1.185 13 C -0.435 4.435 14 C 0.433 3.567 15 O -0.458 6.458 16 O -0.313 6.313 17 C 0.105 3.895 18 O -0.315 6.315 19 H 0.080 0.920 20 H 0.081 0.919 21 H 0.069 0.931 22 H 0.134 0.866 23 H 0.268 0.732 24 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -0.212 2.978 -3.175 4.358 hybrid contribution 1.281 -2.087 -0.322 2.470 sum 1.069 0.891 -3.497 3.764 Atomic orbital electron populations 1.19727 0.87518 1.01198 1.00952 1.25010 1.01164 0.98440 1.27372 1.84217 0.92567 1.03498 1.76966 1.21774 0.98324 0.93075 0.95117 1.19467 0.92103 0.93651 1.37372 0.89291 1.27266 1.05641 0.95915 0.91213 1.68628 1.34856 1.07691 1.28928 0.84800 0.73745 0.78329 0.80532 1.17604 1.17148 1.18491 1.17714 0.92265 0.91366 1.42138 1.20306 0.77356 0.78681 0.80316 1.90744 1.59283 1.60910 1.34903 1.85203 1.58028 1.53673 1.34356 1.16582 0.88186 0.83875 1.00903 1.84677 1.84213 1.28775 1.33863 0.92033 0.91851 0.93124 0.86618 0.73169 0.75300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.32 10.13 71.24 0.72 -0.59 14 2 C -0.40 -18.87 6.50 24.87 0.16 -18.71 14 3 S 0.17 8.19 20.18 -56.49 -1.14 7.05 14 4 C 0.04 2.04 6.21 22.93 0.14 2.19 14 5 C -0.39 -19.90 8.96 23.03 0.21 -19.70 14 6 H 0.09 4.49 7.45 -2.91 -0.02 4.46 14 7 C 0.02 0.98 5.50 85.45 0.47 1.45 14 8 N -0.78 -34.43 10.63 21.93 0.23 -34.19 14 9 Si 1.01 33.04 29.57 68.60 2.03 35.07 14 10 H -0.25 -8.04 7.11 99.48 0.71 -7.34 14 11 H -0.25 -7.24 7.11 99.48 0.71 -6.54 14 12 H -0.26 -8.67 7.11 99.48 0.71 -7.96 14 13 C -0.43 -22.81 5.76 -20.57 -0.12 -22.93 14 14 C 0.59 29.40 6.93 69.96 0.49 29.88 14 15 O -0.57 -30.69 17.85 19.34 0.35 -30.35 14 16 O -0.50 -20.02 13.56 -58.32 -0.79 -20.81 14 17 C 0.16 7.89 6.67 21.56 0.14 8.03 14 18 O -0.50 -22.12 13.03 -92.42 -1.20 -23.32 14 19 H 0.06 2.06 8.14 -2.39 -0.02 2.04 14 20 H 0.06 2.07 8.14 -2.39 -0.02 2.05 14 21 H 0.05 1.83 8.14 -2.39 -0.02 1.81 14 22 H 0.32 12.24 8.29 -92.71 -0.77 11.47 14 23 H 0.41 11.48 8.98 -74.06 -0.67 10.82 14 24 H 0.39 13.02 9.06 -74.06 -0.67 12.35 14 Total: -1.00 -65.37 241.01 1.62 -63.75 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.06 Total: 23.18 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 2.21 Total: -20.37 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.23 Total: -34.19 kcal Atomic # 8 Polarization: -72.83 SS G_CDS: -1.65 Total: -74.48 kcal Atomic # 14 Polarization: 33.04 SS G_CDS: 2.03 Total: 35.07 kcal Atomic # 16 Polarization: 8.19 SS G_CDS: -1.14 Total: 7.05 kcal Total: -65.37 1.62 -63.75 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125755.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.147 kcal (2) G-P(sol) polarization free energy of solvation -65.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds