Wall clock time and date at job start Mon Mar 30 2020 02:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46753 * 2 1 4 4 C 1.42900 * 113.99876 * 184.93527 * 3 2 1 5 5 C 1.50703 * 110.29015 * 296.22606 * 4 3 2 6 6 H 1.07993 * 120.00048 * 125.62105 * 5 4 3 7 7 C 1.37876 * 119.99800 * 305.62809 * 5 4 3 8 8 N 1.31516 * 119.99992 * 185.50308 * 7 5 4 9 9 Si 1.86802 * 120.00023 * 5.49593 * 7 5 4 10 10 H 1.48496 * 109.46917 * 84.94961 * 9 7 5 11 11 H 1.48498 * 109.47367 * 324.94806 * 9 7 5 12 12 H 1.48504 * 109.47049 * 204.94780 * 9 7 5 13 13 C 1.54256 * 110.32275 * 58.35379 * 4 3 2 14 14 C 1.54384 * 105.06280 * 118.99878 * 13 4 3 15 15 N 1.48560 * 104.59281 * 23.85132 * 14 13 4 16 16 C 1.46900 * 111.00393 * 200.96248 * 15 14 13 17 17 C 1.52990 * 109.47500 * 184.78008 * 16 15 14 18 18 C 1.53002 * 109.46783 * 304.77866 * 16 15 14 19 19 C 1.48822 * 104.23835 * 320.49520 * 15 14 13 20 20 H 1.09002 * 109.46977 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47297 * 300.00028 * 1 2 3 22 22 H 1.09000 * 109.47304 * 60.00235 * 1 2 3 23 23 H 1.08993 * 109.47141 * 240.00717 * 2 1 3 24 24 H 1.09000 * 109.47304 * 119.99765 * 2 1 3 25 25 H 0.96998 * 120.00383 * 179.97438 * 8 7 5 26 26 H 1.09004 * 110.32657 * 237.89260 * 13 4 3 27 27 H 1.08996 * 110.32413 * 0.10296 * 13 4 3 28 28 H 1.08997 * 110.41464 * 142.62821 * 14 13 4 29 29 H 1.08996 * 110.41121 * 264.96141 * 14 13 4 30 30 H 1.09002 * 109.46815 * 64.77270 * 16 15 14 31 31 H 1.09002 * 109.47690 * 59.99797 * 17 16 15 32 32 H 1.09000 * 109.47277 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.47154 * 299.99655 * 17 16 15 34 34 H 1.09002 * 109.47184 * 65.07445 * 18 16 15 35 35 H 1.09005 * 109.46930 * 185.07351 * 18 16 15 36 36 H 1.08997 * 109.47382 * 305.07750 * 18 16 15 37 37 H 1.09003 * 110.45352 * 280.77478 * 19 15 14 38 38 H 1.09003 * 110.50053 * 158.24895 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4262 1.4618 -0.1123 5 6 4.0968 0.8450 1.0881 6 1 4.8502 0.0830 0.9535 7 6 3.7484 1.2533 2.3580 8 7 4.4074 0.7955 3.4000 9 14 2.3403 2.4570 2.5987 10 1 1.0552 1.7140 2.6377 11 1 2.3184 3.4248 1.4726 12 1 2.5279 3.1891 3.8770 13 6 3.9176 0.7839 -1.4079 14 6 4.5843 1.9125 -2.2233 15 7 4.9745 2.9263 -1.2098 16 6 5.1611 4.2452 -1.8292 17 6 5.6761 5.2329 -0.7804 18 6 6.1771 4.1347 -2.9678 19 6 3.8353 2.9439 -0.2524 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 4.1625 1.0830 4.2934 26 1 4.6438 0.0049 -1.1756 27 1 3.0755 0.3653 -1.9590 28 1 5.4653 1.5364 -2.7434 29 1 3.8760 2.3369 -2.9348 30 1 4.2090 4.5988 -2.2248 31 1 6.6282 4.8793 -0.3847 32 1 5.8150 6.2114 -1.2400 33 1 4.9523 5.3116 0.0309 34 1 5.7711 3.5017 -3.7569 35 1 6.3834 5.1273 -3.3683 36 1 7.1006 3.6963 -2.5896 37 1 3.0088 3.5300 -0.6544 38 1 4.1525 3.3434 0.7110 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260699769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:32 Heat of formation + Delta-G solvation = -39.940459 kcal Electronic energy + Delta-G solvation = -17311.757662 eV Core-core repulsion = 14768.456507 eV Total energy + Delta-G solvation = -2543.301155 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.02722 -36.65053 -33.42905 -32.21645 -30.43458 -28.71947 -28.06723 -26.58762 -24.20705 -22.33558 -21.44604 -19.65898 -19.04728 -17.00298 -16.00026 -15.38174 -14.65790 -14.39480 -13.90592 -13.69840 -13.42143 -13.11232 -12.75907 -12.30286 -12.03864 -11.87115 -11.79963 -11.72985 -11.64439 -10.96280 -10.76357 -10.70024 -10.57856 -10.48983 -10.28815 -10.09885 -9.89987 -9.71840 -8.96137 -8.54586 -8.11792 -7.79890 -6.06209 -4.12795 3.46789 3.50471 3.65566 4.37300 4.54987 4.90745 5.19317 5.25893 5.32449 5.57341 5.63524 5.70381 5.76861 5.86986 5.88562 5.94984 6.04045 6.09137 6.13663 6.15712 6.20998 6.24989 6.39016 6.48242 6.51064 6.59917 6.67847 6.77227 6.83476 6.86282 7.17718 7.46652 7.66166 7.75953 8.20832 8.70351 8.95501 9.57487 11.04137 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024565 B = 0.011579 C = 0.009557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.577151 B = 2417.603441 C = 2929.182641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.067 3.933 3 O -0.399 6.399 4 C 0.204 3.796 5 C -0.524 4.524 6 H 0.077 0.923 7 C 0.081 3.919 8 N -0.892 5.892 9 Si 0.901 3.099 10 H -0.281 1.281 11 H -0.257 1.257 12 H -0.312 1.312 13 C -0.139 4.139 14 C 0.039 3.961 15 N -0.493 5.493 16 C 0.064 3.936 17 C -0.141 4.141 18 C -0.143 4.143 19 C 0.059 3.941 20 H 0.060 0.940 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.038 0.962 24 H 0.058 0.942 25 H 0.263 0.737 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.026 0.974 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.049 4.061 -10.248 11.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.319 6.319 4 C 0.165 3.835 5 C -0.561 4.561 6 H 0.095 0.905 7 C -0.123 4.123 8 N -0.529 5.529 9 Si 0.732 3.268 10 H -0.208 1.208 11 H -0.182 1.182 12 H -0.241 1.241 13 C -0.177 4.177 14 C -0.089 4.089 15 N -0.219 5.219 16 C -0.045 4.045 17 C -0.199 4.199 18 C -0.200 4.200 19 C -0.068 4.068 20 H 0.079 0.921 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.631 4.097 -9.799 10.745 hybrid contribution -1.334 0.599 -0.139 1.469 sum -2.966 4.696 -9.937 11.384 Atomic orbital electron populations 1.21796 0.96023 1.01015 1.01950 1.22089 0.92669 0.85730 1.00519 1.87648 1.24779 1.25861 1.93658 1.20167 0.78098 0.91616 0.93594 1.21188 1.22608 1.23527 0.88804 0.90535 1.24986 0.95860 0.95634 0.95829 1.69961 1.39724 1.44492 0.98695 0.86593 0.82662 0.81695 0.75803 1.20794 1.18193 1.24141 1.22893 0.99645 0.98000 0.97190 1.22975 0.98077 0.93772 0.94096 1.65533 1.39557 1.04257 1.12526 1.21792 0.97311 0.90820 0.94611 1.21779 1.02264 0.97167 0.98669 1.21852 0.99797 1.01048 0.97329 1.23399 0.89963 0.97020 0.96445 0.92116 0.92569 0.92965 0.94405 0.92374 0.92711 0.90752 0.92301 0.91125 0.95127 0.94861 0.91650 0.93017 0.92632 0.93029 0.92783 0.91697 0.95539 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 10.28 37.16 0.38 -2.17 16 2 C 0.07 1.37 5.97 37.16 0.22 1.59 16 3 O -0.40 -9.31 6.93 -35.23 -0.24 -9.56 16 4 C 0.20 4.81 0.58 -90.39 -0.05 4.76 16 5 C -0.52 -14.51 7.64 -34.44 -0.26 -14.78 16 6 H 0.08 2.32 7.61 -52.49 -0.40 1.92 16 7 C 0.08 2.32 5.31 -17.82 -0.09 2.23 16 8 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 9 Si 0.90 23.23 24.40 -169.99 -4.15 19.08 16 10 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.26 -6.37 5.26 56.52 0.30 -6.07 16 12 H -0.31 -8.12 7.11 56.52 0.40 -7.72 16 13 C -0.14 -2.83 5.78 -25.35 -0.15 -2.97 16 14 C 0.04 0.70 5.16 -2.18 -0.01 0.69 16 15 N -0.49 -9.78 5.20 -221.79 -1.15 -10.93 16 16 C 0.06 1.04 2.49 -67.72 -0.17 0.87 16 17 C -0.14 -2.17 9.24 37.15 0.34 -1.83 16 18 C -0.14 -1.91 8.78 37.16 0.33 -1.58 16 19 C 0.06 1.34 3.16 -2.03 -0.01 1.33 16 20 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.04 0.71 6.19 -51.93 -0.32 0.39 16 24 H 0.06 1.33 7.47 -51.93 -0.39 0.94 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.07 1.56 7.43 -51.93 -0.39 1.18 16 27 H 0.06 1.10 6.38 -51.93 -0.33 0.77 16 28 H 0.07 1.16 7.77 -51.93 -0.40 0.76 16 29 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 30 H 0.03 0.55 7.90 -51.93 -0.41 0.14 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.92 7.24 -51.93 -0.38 0.55 16 34 H 0.05 0.66 7.14 -51.93 -0.37 0.29 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.59 7.71 -51.93 -0.40 0.19 16 38 H 0.09 2.10 5.59 -51.93 -0.29 1.81 16 LS Contribution 286.08 15.07 4.31 4.31 Total: -1.00 -30.18 286.08 -6.62 -36.80 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.69 Total: -1.41 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 0.53 Total: -11.87 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.38 Total: -37.36 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.24 Total: -9.56 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.15 Total: 19.08 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.18 -6.62 -36.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260699769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.137 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds