Wall clock time and date at job start Mon Mar 30 2020 02:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46753 * 2 1 4 4 C 1.42900 * 113.99876 * 184.93527 * 3 2 1 5 5 C 1.50703 * 110.29015 * 296.22606 * 4 3 2 6 6 H 1.07993 * 120.00048 * 125.62105 * 5 4 3 7 7 C 1.37876 * 119.99800 * 305.62809 * 5 4 3 8 8 N 1.31516 * 119.99992 * 185.50308 * 7 5 4 9 9 Si 1.86802 * 120.00023 * 5.49593 * 7 5 4 10 10 H 1.48496 * 109.46917 * 84.94961 * 9 7 5 11 11 H 1.48498 * 109.47367 * 324.94806 * 9 7 5 12 12 H 1.48504 * 109.47049 * 204.94780 * 9 7 5 13 13 C 1.54256 * 110.32275 * 58.35379 * 4 3 2 14 14 C 1.54384 * 105.06280 * 118.99878 * 13 4 3 15 15 N 1.48560 * 104.59281 * 23.85132 * 14 13 4 16 16 C 1.46900 * 111.00393 * 200.96248 * 15 14 13 17 17 C 1.52990 * 109.47500 * 184.78008 * 16 15 14 18 18 C 1.53002 * 109.46783 * 304.77866 * 16 15 14 19 19 C 1.48822 * 104.23835 * 320.49520 * 15 14 13 20 20 H 1.09002 * 109.46977 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47297 * 300.00028 * 1 2 3 22 22 H 1.09000 * 109.47304 * 60.00235 * 1 2 3 23 23 H 1.08993 * 109.47141 * 240.00717 * 2 1 3 24 24 H 1.09000 * 109.47304 * 119.99765 * 2 1 3 25 25 H 0.96998 * 120.00383 * 179.97438 * 8 7 5 26 26 H 1.09004 * 110.32657 * 237.89260 * 13 4 3 27 27 H 1.08996 * 110.32413 * 0.10296 * 13 4 3 28 28 H 1.08997 * 110.41464 * 142.62821 * 14 13 4 29 29 H 1.08996 * 110.41121 * 264.96141 * 14 13 4 30 30 H 1.09002 * 109.46815 * 64.77270 * 16 15 14 31 31 H 1.09002 * 109.47690 * 59.99797 * 17 16 15 32 32 H 1.09000 * 109.47277 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.47154 * 299.99655 * 17 16 15 34 34 H 1.09002 * 109.47184 * 65.07445 * 18 16 15 35 35 H 1.09005 * 109.46930 * 185.07351 * 18 16 15 36 36 H 1.08997 * 109.47382 * 305.07750 * 18 16 15 37 37 H 1.09003 * 110.45352 * 280.77478 * 19 15 14 38 38 H 1.09003 * 110.50053 * 158.24895 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4262 1.4618 -0.1123 5 6 4.0968 0.8450 1.0881 6 1 4.8502 0.0830 0.9535 7 6 3.7484 1.2533 2.3580 8 7 4.4074 0.7955 3.4000 9 14 2.3403 2.4570 2.5987 10 1 1.0552 1.7140 2.6377 11 1 2.3184 3.4248 1.4726 12 1 2.5279 3.1891 3.8770 13 6 3.9176 0.7839 -1.4079 14 6 4.5843 1.9125 -2.2233 15 7 4.9745 2.9263 -1.2098 16 6 5.1611 4.2452 -1.8292 17 6 5.6761 5.2329 -0.7804 18 6 6.1771 4.1347 -2.9678 19 6 3.8353 2.9439 -0.2524 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 4.1625 1.0830 4.2934 26 1 4.6438 0.0049 -1.1756 27 1 3.0755 0.3653 -1.9590 28 1 5.4653 1.5364 -2.7434 29 1 3.8760 2.3369 -2.9348 30 1 4.2090 4.5988 -2.2248 31 1 6.6282 4.8793 -0.3847 32 1 5.8150 6.2114 -1.2400 33 1 4.9523 5.3116 0.0309 34 1 5.7711 3.5017 -3.7569 35 1 6.3834 5.1273 -3.3683 36 1 7.1006 3.6963 -2.5896 37 1 3.0088 3.5300 -0.6544 38 1 4.1525 3.3434 0.7110 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260699769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:31 Heat of formation + Delta-G solvation = -61.495966 kcal Electronic energy + Delta-G solvation = -17312.692379 eV Core-core repulsion = 14768.456507 eV Total energy + Delta-G solvation = -2544.235872 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.67604 -38.24606 -35.02959 -34.23535 -31.98137 -30.22059 -29.79341 -27.91748 -26.11939 -23.87960 -22.97210 -21.15894 -20.74201 -19.02681 -17.59362 -17.22515 -16.17349 -16.11191 -15.53314 -15.24719 -15.10051 -14.72541 -14.55330 -13.86009 -13.51239 -13.39117 -13.22569 -13.13135 -12.91845 -12.59288 -12.46800 -12.27686 -12.10684 -12.02904 -11.93018 -11.72170 -11.61095 -11.44844 -10.94714 -10.76034 -9.97697 -9.29010 -8.31878 -6.39857 1.37800 1.39841 1.56498 2.39183 2.76989 3.10596 3.38348 3.89814 4.02658 4.10233 4.22398 4.30967 4.34789 4.44518 4.47847 4.50443 4.67345 4.69598 4.80461 4.84639 4.94427 4.96302 5.00167 5.02262 5.07198 5.16559 5.21006 5.26481 5.33568 5.37929 5.45735 5.62990 5.95542 6.06766 6.30743 6.66746 6.80216 7.34139 8.82498 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024565 B = 0.011579 C = 0.009557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.577151 B = 2417.603441 C = 2929.182641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.059 3.941 3 O -0.406 6.406 4 C 0.197 3.803 5 C -0.516 4.516 6 H 0.036 0.964 7 C 0.033 3.967 8 N -0.939 5.939 9 Si 0.952 3.048 10 H -0.279 1.279 11 H -0.241 1.241 12 H -0.317 1.317 13 C -0.136 4.136 14 C 0.046 3.954 15 N -0.513 5.513 16 C 0.058 3.942 17 C -0.140 4.140 18 C -0.135 4.135 19 C 0.066 3.934 20 H 0.090 0.910 21 H 0.041 0.959 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.024 0.976 25 H 0.264 0.736 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.032 0.968 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.109 5.216 -12.915 14.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 O -0.327 6.327 4 C 0.158 3.842 5 C -0.554 4.554 6 H 0.054 0.946 7 C -0.166 4.166 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.205 1.205 11 H -0.165 1.165 12 H -0.246 1.246 13 C -0.174 4.174 14 C -0.082 4.082 15 N -0.239 5.239 16 C -0.050 4.050 17 C -0.198 4.198 18 C -0.193 4.193 19 C -0.062 4.062 20 H 0.109 0.891 21 H 0.061 0.939 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.695 5.253 -12.494 13.819 hybrid contribution -0.944 0.164 0.654 1.160 sum -3.639 5.417 -11.840 13.519 Atomic orbital electron populations 1.21782 0.92890 1.03154 1.02176 1.22309 0.95218 0.84400 0.99824 1.87612 1.24010 1.27442 1.93655 1.20139 0.78175 0.92628 0.93252 1.21387 1.21334 1.22018 0.90623 0.94557 1.25654 0.97922 0.97282 0.95702 1.70078 1.41871 1.46703 0.99205 0.85765 0.79983 0.80237 0.75881 1.20529 1.16519 1.24646 1.22813 1.00104 0.98374 0.96142 1.22991 0.99208 0.92381 0.93603 1.65498 1.38323 1.06714 1.13393 1.21971 0.98550 0.89001 0.95496 1.21794 1.00999 0.98768 0.98227 1.21808 0.98387 1.02845 0.96248 1.23123 0.91031 0.95786 0.96262 0.89119 0.93950 0.91038 0.92502 0.95757 0.92756 0.92409 0.90268 0.89179 0.93002 0.94273 0.92687 0.89816 0.94651 0.92081 0.90195 0.92486 0.94963 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 10.28 71.98 0.74 -3.72 16 2 C 0.06 2.34 5.97 71.98 0.43 2.77 16 3 O -0.41 -18.42 6.93 -148.98 -1.03 -19.46 16 4 C 0.20 9.20 0.58 -10.64 -0.01 9.20 16 5 C -0.52 -29.46 7.64 25.60 0.20 -29.26 16 6 H 0.04 2.31 7.61 -2.91 -0.02 2.29 16 7 C 0.03 1.98 5.31 84.65 0.45 2.43 16 8 N -0.94 -59.60 13.96 21.45 0.30 -59.30 16 9 Si 0.95 48.71 24.40 68.60 1.67 50.38 16 10 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 11 H -0.24 -11.61 5.26 99.48 0.52 -11.09 16 12 H -0.32 -16.31 7.11 99.48 0.71 -15.60 16 13 C -0.14 -5.33 5.78 31.49 0.18 -5.15 16 14 C 0.05 1.52 5.16 86.45 0.45 1.97 16 15 N -0.51 -19.48 5.20 -855.62 -4.45 -23.94 16 16 C 0.06 1.73 2.49 44.91 0.11 1.85 16 17 C -0.14 -4.06 9.24 71.98 0.67 -3.40 16 18 C -0.14 -3.12 8.78 71.98 0.63 -2.49 16 19 C 0.07 2.92 3.16 86.40 0.27 3.20 16 20 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 21 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.06 2.02 6.19 -2.39 -0.01 2.01 16 24 H 0.02 1.12 7.47 -2.39 -0.02 1.10 16 25 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 26 H 0.06 2.42 7.43 -2.39 -0.02 2.40 16 27 H 0.08 2.74 6.38 -2.39 -0.02 2.73 16 28 H 0.09 2.66 7.77 -2.39 -0.02 2.65 16 29 H 0.05 1.53 8.00 -2.39 -0.02 1.51 16 30 H 0.04 1.14 7.90 -2.39 -0.02 1.12 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.03 1.14 7.24 -2.39 -0.02 1.12 16 34 H 0.06 1.29 7.14 -2.39 -0.02 1.28 16 35 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.03 1.38 7.71 -2.39 -0.02 1.36 16 38 H 0.06 2.83 5.59 -2.39 -0.01 2.81 16 Total: -1.00 -66.98 286.08 1.43 -65.55 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.82 Total: 9.38 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 4.12 Total: -22.62 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -4.15 Total: -83.24 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -1.03 Total: -19.46 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 1.67 Total: 50.38 kcal Total: -66.98 1.43 -65.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260699769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.055 kcal (2) G-P(sol) polarization free energy of solvation -66.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds