Wall clock time and date at job start Mon Mar 30 2020 02:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42897 * 109.47228 * 2 1 4 4 C 1.42907 * 114.00214 * 174.00720 * 3 2 1 5 5 C 1.53003 * 109.46882 * 54.54443 * 4 3 2 6 6 C 1.50697 * 109.46981 * 294.54005 * 4 3 2 7 7 H 1.07998 * 120.00405 * 275.37275 * 6 4 3 8 8 C 1.37880 * 119.99731 * 95.36945 * 6 4 3 9 9 N 1.31516 * 119.99767 * 35.68207 * 8 6 4 10 10 Si 1.86797 * 120.00221 * 215.67936 * 8 6 4 11 11 H 1.48501 * 109.46907 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47542 * 120.00131 * 10 8 6 13 13 H 1.48505 * 109.47257 * 240.00355 * 10 8 6 14 14 C 1.52998 * 109.47067 * 174.54289 * 4 3 2 15 15 H 1.09003 * 109.50406 * 176.47178 * 14 4 3 16 16 C 1.53125 * 109.50428 * 296.54521 * 14 4 3 17 17 C 1.53115 * 109.15962 * 177.59477 * 16 14 4 18 18 C 1.53033 * 109.28194 * 302.34711 * 17 16 14 19 19 N 1.46853 * 109.52149 * 59.18135 * 18 17 16 20 20 C 1.46845 * 111.23208 * 298.27842 * 19 18 17 21 21 H 1.09001 * 109.47264 * 300.00700 * 1 2 3 22 22 H 1.09006 * 109.47178 * 60.00172 * 1 2 3 23 23 H 1.09002 * 109.47501 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47241 * 239.99854 * 2 1 3 25 25 H 1.09006 * 109.47178 * 119.99828 * 2 1 3 26 26 H 1.08994 * 109.47138 * 60.00075 * 5 4 3 27 27 H 1.09005 * 109.46797 * 180.02562 * 5 4 3 28 28 H 1.09003 * 109.46789 * 299.99866 * 5 4 3 29 29 H 0.97007 * 119.99902 * 180.02562 * 9 8 6 30 30 H 1.08998 * 109.52454 * 297.50376 * 16 14 4 31 31 H 1.09001 * 109.51766 * 57.69229 * 16 14 4 32 32 H 1.09003 * 109.50230 * 62.29176 * 17 16 14 33 33 H 1.09001 * 109.50458 * 182.36589 * 17 16 14 34 34 H 1.09001 * 109.46434 * 179.19332 * 18 17 16 35 35 H 1.08994 * 109.46537 * 299.17661 * 18 17 16 36 36 H 1.00902 * 110.99630 * 62.35494 * 19 18 17 37 37 H 1.09004 * 109.42614 * 301.68781 * 20 19 18 38 38 H 1.08995 * 109.49465 * 181.71828 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4241 1.4625 0.1363 5 6 4.1101 0.6292 -0.9482 6 6 3.8406 0.9601 1.4947 7 1 3.8031 1.6195 2.3492 8 6 4.2696 -0.3414 1.6466 9 7 4.9696 -0.9184 0.6944 10 14 3.8565 -1.2851 3.2048 11 1 3.0659 -0.4173 4.1142 12 1 3.0634 -2.4915 2.8574 13 1 5.1125 -1.6966 3.8820 14 6 3.8332 2.9292 -0.0125 15 1 4.9061 3.0264 0.1535 16 6 3.4880 3.4157 -1.4228 17 6 3.8452 4.8997 -1.5439 18 6 3.0894 5.6904 -0.4735 19 7 3.4544 5.1877 0.8571 20 6 3.0786 3.7769 1.0142 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8088 0.9926 -1.9306 27 1 5.1916 0.7167 -0.8439 28 1 3.8186 -0.4158 -0.8421 29 1 5.2711 -1.8342 0.8011 30 1 4.0571 2.8431 -2.1551 31 1 2.4214 3.2818 -1.6033 32 1 4.9182 5.0286 -1.4017 33 1 3.5629 5.2625 -2.5322 34 1 3.3525 6.7455 -0.5478 35 1 2.0165 5.5721 -0.6245 36 1 4.4383 5.3214 1.0368 37 1 2.0055 3.6678 0.8567 38 1 3.3339 3.4421 2.0195 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260828625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:32 Heat of formation + Delta-G solvation = -48.337619 kcal Electronic energy + Delta-G solvation = -17464.577931 eV Core-core repulsion = 14920.912648 eV Total energy + Delta-G solvation = -2543.665283 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 3.34 seconds Orbital eigenvalues (eV) -38.77608 -36.65053 -33.25741 -31.83731 -30.82887 -29.52530 -27.53154 -25.64571 -23.21709 -22.38179 -21.40406 -20.13171 -18.72715 -16.79117 -15.50547 -14.92955 -14.55636 -14.29741 -14.13492 -13.78433 -13.62584 -12.99010 -12.54786 -12.21208 -11.78618 -11.65999 -11.50510 -11.24010 -11.02591 -10.83615 -10.75119 -10.55815 -10.45356 -10.32320 -10.13673 -9.86197 -9.66633 -9.41730 -8.97388 -8.52071 -7.77754 -7.48693 -6.18738 -4.14100 3.20399 3.33599 3.41655 4.34728 4.83439 4.89426 5.24703 5.32553 5.51939 5.58616 5.92009 5.93798 6.01590 6.06652 6.09813 6.23721 6.29281 6.36167 6.50693 6.56278 6.63263 6.68552 6.82610 6.90145 7.01865 7.02159 7.07932 7.19040 7.30296 7.55530 7.73423 7.78203 7.94178 8.10899 8.30910 8.73786 9.03189 9.44424 10.70398 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.010208 C = 0.009308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.895560 B = 2742.197215 C = 3007.428225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 O -0.405 6.405 4 C 0.228 3.772 5 C -0.130 4.130 6 C -0.556 4.556 7 H 0.065 0.935 8 C 0.090 3.910 9 N -0.838 5.838 10 Si 0.853 3.147 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.286 1.286 14 C -0.087 4.087 15 H 0.065 0.935 16 C -0.115 4.115 17 C -0.157 4.157 18 C 0.059 3.941 19 N -0.693 5.693 20 C 0.071 3.929 21 H 0.054 0.946 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.028 0.972 25 H 0.050 0.950 26 H -0.004 1.004 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.258 0.742 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.332 0.668 37 H 0.072 0.928 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.038 5.410 -3.254 7.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.005 4.005 3 O -0.326 6.326 4 C 0.190 3.810 5 C -0.188 4.188 6 C -0.592 4.592 7 H 0.083 0.917 8 C -0.116 4.116 9 N -0.474 5.474 10 Si 0.679 3.321 11 H -0.191 1.191 12 H -0.206 1.206 13 H -0.212 1.212 14 C -0.107 4.107 15 H 0.083 0.917 16 C -0.153 4.153 17 C -0.196 4.196 18 C -0.071 4.071 19 N -0.321 5.321 20 C -0.058 4.058 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.015 0.985 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.149 0.851 37 H 0.091 0.909 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.648 5.678 -3.030 7.398 hybrid contribution 0.761 -1.489 0.233 1.688 sum -2.887 4.189 -2.797 5.806 Atomic orbital electron populations 1.21764 0.96598 1.00438 1.01680 1.21911 0.92090 0.86793 0.99708 1.87718 1.26042 1.24566 1.94265 1.19005 0.77896 0.90132 0.93919 1.22476 1.01299 1.01190 0.93815 1.21367 1.46425 0.96830 0.94566 0.91710 1.24966 0.92729 0.98068 0.95886 1.70688 1.28699 1.13735 1.34255 0.87188 0.78928 0.80508 0.85478 1.19148 1.20578 1.21212 1.21677 0.99156 0.96189 0.93665 0.91704 1.21690 1.01569 0.93616 0.98412 1.22292 1.00164 0.97722 0.99451 1.21944 0.99912 0.97381 0.87830 1.60829 1.23194 1.20491 1.27540 1.21997 1.00231 0.84159 0.99423 0.92659 0.93178 0.92825 0.95368 0.93188 0.98518 0.92275 0.90920 0.93106 0.92436 0.91854 0.92695 0.92635 0.91984 0.91429 0.85127 0.90905 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 10.28 37.15 0.38 -2.23 16 2 C 0.07 1.59 5.68 37.15 0.21 1.80 16 3 O -0.41 -9.52 8.58 -35.23 -0.30 -9.82 16 4 C 0.23 5.43 0.46 -91.77 -0.04 5.39 16 5 C -0.13 -3.18 6.09 37.16 0.23 -2.95 16 6 C -0.56 -14.52 7.28 -34.44 -0.25 -14.78 16 7 H 0.06 1.73 6.50 -52.49 -0.34 1.39 16 8 C 0.09 2.35 3.94 -17.82 -0.07 2.28 16 9 N -0.84 -22.19 9.55 55.43 0.53 -21.66 16 10 Si 0.85 20.13 29.15 -169.99 -4.96 15.18 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 14 C -0.09 -1.81 1.74 -90.54 -0.16 -1.97 16 15 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 16 C -0.12 -2.14 4.67 -26.61 -0.12 -2.27 16 17 C -0.16 -2.40 6.08 -26.65 -0.16 -2.56 16 18 C 0.06 0.89 6.56 -3.83 -0.03 0.87 16 19 N -0.69 -11.66 6.87 -113.82 -0.78 -12.44 16 20 C 0.07 1.40 5.45 -3.84 -0.02 1.37 16 21 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.03 0.63 6.70 -51.93 -0.35 0.28 16 25 H 0.05 1.20 5.78 -51.93 -0.30 0.90 16 26 H 0.00 -0.09 6.42 -51.93 -0.33 -0.42 16 27 H 0.06 1.53 7.43 -51.93 -0.39 1.14 16 28 H 0.07 1.88 4.72 -51.93 -0.25 1.63 16 29 H 0.26 6.53 8.31 -40.82 -0.34 6.20 16 30 H 0.06 1.09 6.52 -51.93 -0.34 0.76 16 31 H 0.06 1.24 7.72 -51.93 -0.40 0.84 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.33 5.23 8.86 -39.29 -0.35 4.88 16 37 H 0.07 1.54 7.56 -51.93 -0.39 1.15 16 38 H 0.08 1.66 6.51 -51.93 -0.34 1.32 16 LS Contribution 281.88 15.07 4.25 4.25 Total: -1.00 -26.28 281.88 -7.59 -33.87 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.29 Total: 5.68 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -0.03 Total: -15.05 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: -0.25 Total: -34.09 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.30 Total: -9.82 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.96 Total: 15.18 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.28 -7.59 -33.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260828625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.471 kcal (2) G-P(sol) polarization free energy of solvation -26.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.34 seconds