Wall clock time and date at job start Mon Mar 30 2020 02:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42897 * 109.47228 * 2 1 4 4 C 1.42907 * 114.00214 * 174.00720 * 3 2 1 5 5 C 1.53003 * 109.46882 * 54.54443 * 4 3 2 6 6 C 1.50697 * 109.46981 * 294.54005 * 4 3 2 7 7 H 1.07998 * 120.00405 * 275.37275 * 6 4 3 8 8 C 1.37880 * 119.99731 * 95.36945 * 6 4 3 9 9 N 1.31516 * 119.99767 * 35.68207 * 8 6 4 10 10 Si 1.86797 * 120.00221 * 215.67936 * 8 6 4 11 11 H 1.48501 * 109.46907 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47542 * 120.00131 * 10 8 6 13 13 H 1.48505 * 109.47257 * 240.00355 * 10 8 6 14 14 C 1.52998 * 109.47067 * 174.54289 * 4 3 2 15 15 H 1.09003 * 109.50406 * 176.47178 * 14 4 3 16 16 C 1.53125 * 109.50428 * 296.54521 * 14 4 3 17 17 C 1.53115 * 109.15962 * 177.59477 * 16 14 4 18 18 C 1.53033 * 109.28194 * 302.34711 * 17 16 14 19 19 N 1.46853 * 109.52149 * 59.18135 * 18 17 16 20 20 C 1.46845 * 111.23208 * 298.27842 * 19 18 17 21 21 H 1.09001 * 109.47264 * 300.00700 * 1 2 3 22 22 H 1.09006 * 109.47178 * 60.00172 * 1 2 3 23 23 H 1.09002 * 109.47501 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47241 * 239.99854 * 2 1 3 25 25 H 1.09006 * 109.47178 * 119.99828 * 2 1 3 26 26 H 1.08994 * 109.47138 * 60.00075 * 5 4 3 27 27 H 1.09005 * 109.46797 * 180.02562 * 5 4 3 28 28 H 1.09003 * 109.46789 * 299.99866 * 5 4 3 29 29 H 0.97007 * 119.99902 * 180.02562 * 9 8 6 30 30 H 1.08998 * 109.52454 * 297.50376 * 16 14 4 31 31 H 1.09001 * 109.51766 * 57.69229 * 16 14 4 32 32 H 1.09003 * 109.50230 * 62.29176 * 17 16 14 33 33 H 1.09001 * 109.50458 * 182.36589 * 17 16 14 34 34 H 1.09001 * 109.46434 * 179.19332 * 18 17 16 35 35 H 1.08994 * 109.46537 * 299.17661 * 18 17 16 36 36 H 1.00902 * 110.99630 * 62.35494 * 19 18 17 37 37 H 1.09004 * 109.42614 * 301.68781 * 20 19 18 38 38 H 1.08995 * 109.49465 * 181.71828 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4241 1.4625 0.1363 5 6 4.1101 0.6292 -0.9482 6 6 3.8406 0.9601 1.4947 7 1 3.8031 1.6195 2.3492 8 6 4.2696 -0.3414 1.6466 9 7 4.9696 -0.9184 0.6944 10 14 3.8565 -1.2851 3.2048 11 1 3.0659 -0.4173 4.1142 12 1 3.0634 -2.4915 2.8574 13 1 5.1125 -1.6966 3.8820 14 6 3.8332 2.9292 -0.0125 15 1 4.9061 3.0264 0.1535 16 6 3.4880 3.4157 -1.4228 17 6 3.8452 4.8997 -1.5439 18 6 3.0894 5.6904 -0.4735 19 7 3.4544 5.1877 0.8571 20 6 3.0786 3.7769 1.0142 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8088 0.9926 -1.9306 27 1 5.1916 0.7167 -0.8439 28 1 3.8186 -0.4158 -0.8421 29 1 5.2711 -1.8342 0.8011 30 1 4.0571 2.8431 -2.1551 31 1 2.4214 3.2818 -1.6033 32 1 4.9182 5.0286 -1.4017 33 1 3.5629 5.2625 -2.5322 34 1 3.3525 6.7455 -0.5478 35 1 2.0165 5.5721 -0.6245 36 1 4.4383 5.3214 1.0368 37 1 2.0055 3.6678 0.8567 38 1 3.3339 3.4421 2.0195 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260828625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:27 Heat of formation + Delta-G solvation = -65.010002 kcal Electronic energy + Delta-G solvation = -17465.300900 eV Core-core repulsion = 14920.912648 eV Total energy + Delta-G solvation = -2544.388252 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.41848 -38.29872 -35.15457 -33.54224 -32.26343 -31.10037 -29.35031 -27.61174 -24.78195 -23.94020 -22.96618 -21.68275 -20.48849 -18.74310 -17.10873 -16.72235 -16.27733 -16.05626 -15.67640 -15.35701 -15.17922 -14.75440 -14.06572 -13.80574 -13.36503 -13.29944 -13.08286 -12.92715 -12.75063 -12.60796 -12.45978 -12.22096 -12.17453 -11.97644 -11.79231 -11.56540 -11.36112 -11.24143 -10.72719 -10.47257 -9.57343 -9.07103 -8.20173 -6.19192 1.29780 1.39482 1.50015 2.38004 2.85075 3.46602 3.56218 3.98734 4.15297 4.23089 4.35821 4.38407 4.55961 4.63320 4.69683 4.78475 4.79955 4.89749 4.95948 5.01715 5.08583 5.11821 5.18933 5.24984 5.26812 5.33784 5.39598 5.46854 5.59824 5.73430 5.80391 6.08061 6.22367 6.33645 6.60827 6.71152 7.12574 7.40523 8.68864 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.010208 C = 0.009308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.895560 B = 2742.197215 C = 3007.428225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.067 3.933 3 O -0.408 6.408 4 C 0.222 3.778 5 C -0.114 4.114 6 C -0.574 4.574 7 H 0.051 0.949 8 C 0.060 3.940 9 N -0.857 5.857 10 Si 0.903 3.097 11 H -0.272 1.272 12 H -0.275 1.275 13 H -0.283 1.283 14 C -0.084 4.084 15 H 0.050 0.950 16 C -0.109 4.109 17 C -0.149 4.149 18 C 0.059 3.941 19 N -0.691 5.691 20 C 0.086 3.914 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.021 0.979 25 H 0.026 0.974 26 H 0.007 0.993 27 H 0.037 0.963 28 H 0.055 0.945 29 H 0.261 0.739 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.340 0.660 37 H 0.059 0.941 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.803 6.422 -3.712 8.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.010 4.010 3 O -0.329 6.329 4 C 0.185 3.815 5 C -0.171 4.171 6 C -0.610 4.610 7 H 0.069 0.931 8 C -0.146 4.146 9 N -0.494 5.494 10 Si 0.728 3.272 11 H -0.196 1.196 12 H -0.200 1.200 13 H -0.209 1.209 14 C -0.104 4.104 15 H 0.068 0.932 16 C -0.147 4.147 17 C -0.188 4.188 18 C -0.070 4.070 19 N -0.319 5.319 20 C -0.043 4.043 21 H 0.075 0.925 22 H 0.081 0.919 23 H 0.097 0.903 24 H 0.039 0.961 25 H 0.044 0.956 26 H 0.026 0.974 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.158 0.842 37 H 0.077 0.923 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.412 6.694 -3.488 8.744 hybrid contribution 1.011 -1.809 0.362 2.104 sum -3.402 4.885 -3.125 6.723 Atomic orbital electron populations 1.21716 0.93064 1.02370 1.02391 1.22048 0.94971 0.85823 0.98160 1.87708 1.25600 1.25486 1.94121 1.19060 0.78053 0.91843 0.92586 1.22253 0.99796 1.00363 0.94707 1.21533 1.46897 0.97215 0.95319 0.93080 1.25436 0.92493 0.98566 0.98065 1.70736 1.29117 1.13981 1.35536 0.86421 0.78594 0.79457 0.82761 1.19632 1.19993 1.20945 1.21583 0.98236 0.94801 0.95807 0.93186 1.21592 1.00714 0.96141 0.96264 1.22231 1.00572 0.94990 1.00987 1.22053 0.99726 0.98877 0.86357 1.60782 1.23872 1.18075 1.29179 1.21668 0.99017 0.85860 0.97772 0.92511 0.91858 0.90330 0.96104 0.95618 0.97380 0.94385 0.92616 0.92867 0.93246 0.92807 0.92114 0.90159 0.88882 0.91754 0.84239 0.92289 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 10.28 71.98 0.74 -3.91 16 2 C 0.07 2.93 5.68 71.98 0.41 3.34 16 3 O -0.41 -19.24 8.58 -148.98 -1.28 -20.52 16 4 C 0.22 10.75 0.46 -11.54 -0.01 10.74 16 5 C -0.11 -5.63 6.09 71.98 0.44 -5.19 16 6 C -0.57 -30.60 7.28 25.60 0.19 -30.41 16 7 H 0.05 2.82 6.50 -2.91 -0.02 2.80 16 8 C 0.06 3.15 3.94 84.66 0.33 3.48 16 9 N -0.86 -46.10 9.55 21.45 0.20 -45.90 16 10 Si 0.90 41.75 29.15 68.60 2.00 43.75 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 14 C -0.08 -3.51 1.74 -10.74 -0.02 -3.53 16 15 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 16 C -0.11 -3.94 4.67 30.67 0.14 -3.80 16 17 C -0.15 -4.13 6.08 30.64 0.19 -3.94 16 18 C 0.06 1.60 6.56 86.32 0.57 2.17 16 19 N -0.69 -22.11 6.87 -514.02 -3.53 -25.64 16 20 C 0.09 3.41 5.45 86.32 0.47 3.88 16 21 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 22 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 23 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.02 0.93 6.70 -2.39 -0.02 0.91 16 25 H 0.03 1.24 5.78 -2.38 -0.01 1.23 16 26 H 0.01 0.35 6.42 -2.39 -0.02 0.33 16 27 H 0.04 2.00 7.43 -2.38 -0.02 1.98 16 28 H 0.06 2.93 4.72 -2.39 -0.01 2.92 16 29 H 0.26 13.34 8.31 -92.70 -0.77 12.57 16 30 H 0.05 1.83 6.52 -2.39 -0.02 1.82 16 31 H 0.05 2.03 7.72 -2.39 -0.02 2.01 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.34 10.12 8.86 -89.69 -0.79 9.33 16 37 H 0.06 2.48 7.56 -2.38 -0.02 2.46 16 38 H 0.06 2.42 6.51 -2.39 -0.02 2.41 16 Total: -1.00 -56.16 281.88 1.09 -55.07 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.24 Total: 20.40 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: 3.45 Total: -27.17 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -3.32 Total: -71.53 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.28 Total: -20.52 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.00 Total: 43.75 kcal Total: -56.16 1.09 -55.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260828625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.937 kcal (2) G-P(sol) polarization free energy of solvation -56.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds