Wall clock time and date at job start Mon Mar 30 2020 02:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46893 * 109.47220 * 2 1 4 4 C 1.46901 * 111.00072 * 169.14451 * 3 2 1 5 5 H 1.09003 * 109.47448 * 179.72684 * 4 3 2 6 6 C 1.53001 * 109.46637 * 59.73195 * 4 3 2 7 7 C 1.50697 * 109.47252 * 299.73197 * 4 3 2 8 8 H 1.07996 * 120.00097 * 359.97438 * 7 4 3 9 9 C 1.37878 * 119.99834 * 179.97438 * 7 4 3 10 10 N 1.31520 * 120.00088 * 359.97438 * 9 7 4 11 11 Si 1.86799 * 119.99914 * 180.27452 * 9 7 4 12 12 H 1.48501 * 109.47131 * 179.72361 * 11 9 7 13 13 H 1.48499 * 109.46943 * 299.72138 * 11 9 7 14 14 H 1.48491 * 109.47238 * 59.72071 * 11 9 7 15 15 C 1.46904 * 111.00141 * 293.10211 * 3 2 1 16 16 H 1.09001 * 109.52141 * 79.37215 * 15 3 2 17 17 C 1.53178 * 109.52026 * 199.55772 * 15 3 2 18 18 C 1.53186 * 109.03344 * 176.88303 * 17 15 3 19 19 C 1.53085 * 109.16411 * 303.02574 * 18 17 15 20 20 O 1.42905 * 109.41898 * 57.60744 * 19 18 17 21 21 C 1.42903 * 114.09545 * 298.84169 * 20 19 18 22 22 H 1.09004 * 109.47392 * 185.31997 * 1 2 3 23 23 H 1.09005 * 109.47357 * 305.31752 * 1 2 3 24 24 H 1.08999 * 109.47070 * 65.31374 * 1 2 3 25 25 H 1.08996 * 109.46753 * 239.99652 * 2 1 3 26 26 H 1.08997 * 109.46925 * 120.00094 * 2 1 3 27 27 H 1.09000 * 109.47807 * 80.34883 * 6 4 3 28 28 H 1.09008 * 109.47020 * 200.35073 * 6 4 3 29 29 H 1.09007 * 109.47103 * 320.34603 * 6 4 3 30 30 H 0.96995 * 119.99793 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.54913 * 296.75240 * 17 15 3 32 32 H 1.08998 * 109.54189 * 57.02061 * 17 15 3 33 33 H 1.08992 * 109.51909 * 183.11448 * 18 17 15 34 34 H 1.09006 * 109.51641 * 62.92750 * 18 17 15 35 35 H 1.09000 * 109.47825 * 297.62545 * 19 18 17 36 36 H 1.08998 * 109.49253 * 177.59496 * 19 18 17 37 37 H 1.09003 * 109.48237 * 301.17492 * 21 20 19 38 38 H 1.09001 * 109.48028 * 181.14023 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4650 1.4323 0.2583 5 1 3.8022 2.4688 0.2480 6 6 4.2029 0.6452 -0.8266 7 6 3.7548 0.8231 1.6058 8 1 2.9461 0.4395 2.2102 9 6 5.0523 0.7554 2.0672 10 7 6.0372 1.2221 1.3310 11 14 5.4123 -0.0067 3.7342 12 1 6.8740 0.0358 3.9926 13 1 4.7004 0.7558 4.7911 14 1 4.9486 -1.4173 3.7441 15 6 1.6878 2.0607 -1.2615 16 1 0.6458 2.3799 -1.2405 17 6 2.5951 3.2816 -1.4421 18 6 2.2935 3.9322 -2.7958 19 6 2.4863 2.8956 -3.9057 20 8 1.6363 1.7732 -3.6604 21 6 1.9040 1.0964 -2.4307 22 1 -0.3634 -1.0233 0.0953 23 1 -0.3634 0.5941 0.8386 24 1 -0.3633 0.4292 -0.9337 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 4.3004 1.2617 -1.7202 28 1 5.1938 0.3698 -0.4653 29 1 3.6403 -0.2569 -1.0672 30 1 6.9499 1.1748 1.6557 31 1 2.4058 3.9981 -0.6429 32 1 3.6386 2.9680 -1.4128 33 1 2.9727 4.7691 -2.9570 34 1 1.2639 4.2901 -2.8065 35 1 3.5257 2.5679 -3.9204 36 1 2.2318 3.3409 -4.8674 37 1 2.9360 0.7452 -2.4261 38 1 1.2300 0.2457 -2.3297 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261135003.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:21 Heat of formation + Delta-G solvation = -30.133867 kcal Electronic energy + Delta-G solvation = -17475.812311 eV Core-core repulsion = 14932.936402 eV Total energy + Delta-G solvation = -2542.875909 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.80971 -36.83558 -33.07864 -32.85932 -30.50388 -29.55847 -27.15486 -25.43512 -24.59731 -23.05785 -21.27724 -20.29000 -18.59837 -16.38479 -16.00135 -15.73662 -14.96049 -14.46594 -14.33099 -14.00674 -13.76120 -13.26626 -12.44915 -12.34948 -12.22915 -11.88014 -11.70860 -11.15667 -11.09230 -11.05316 -10.76307 -10.69129 -10.49718 -10.42425 -10.27912 -9.97841 -9.90619 -9.32324 -9.19316 -8.74351 -8.30116 -7.09743 -6.02410 -4.06517 3.31327 3.35808 3.38816 4.18522 4.41144 4.95061 5.21449 5.24002 5.29692 5.33415 5.50045 5.61323 5.77058 5.83669 5.92290 5.99626 6.02871 6.12086 6.20940 6.25821 6.29700 6.41771 6.59940 6.61160 6.71626 6.76886 6.88337 6.90722 7.12059 7.39363 7.57440 7.72719 7.82429 8.11679 8.39783 8.60734 8.99769 9.58219 11.03865 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033180 B = 0.009002 C = 0.007830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.674583 B = 3109.812971 C = 3574.979496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 N -0.521 5.521 4 C 0.204 3.796 5 H 0.050 0.950 6 C -0.178 4.178 7 C -0.500 4.500 8 H 0.062 0.938 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.895 3.105 12 H -0.289 1.289 13 H -0.277 1.277 14 H -0.278 1.278 15 C 0.060 3.940 16 H 0.071 0.929 17 C -0.127 4.127 18 C -0.153 4.153 19 C 0.061 3.939 20 O -0.391 6.391 21 C 0.008 3.992 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.029 0.971 26 H 0.086 0.914 27 H 0.017 0.983 28 H 0.088 0.912 29 H 0.027 0.973 30 H 0.260 0.740 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.265 1.451 -6.939 9.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.081 4.081 3 N -0.246 5.246 4 C 0.098 3.902 5 H 0.067 0.933 6 C -0.237 4.237 7 C -0.539 4.539 8 H 0.080 0.920 9 C -0.143 4.143 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.214 1.214 13 H -0.203 1.203 14 H -0.204 1.204 15 C -0.050 4.050 16 H 0.089 0.911 17 C -0.165 4.165 18 C -0.191 4.191 19 C -0.016 4.016 20 O -0.309 6.309 21 C -0.069 4.069 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.104 0.896 27 H 0.036 0.964 28 H 0.107 0.893 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.447 1.668 -6.670 9.425 hybrid contribution 0.920 -0.718 0.419 1.240 sum -5.527 0.950 -6.250 8.398 Atomic orbital electron populations 1.21847 0.96849 1.00411 1.01498 1.22090 0.93680 0.90940 1.01431 1.62609 1.18708 1.14754 1.28511 1.19435 0.80222 0.96885 0.93659 0.93268 1.22742 1.04887 0.98502 0.97544 1.21131 0.92355 1.38837 1.01580 0.92010 1.24920 0.96256 0.95773 0.97377 1.69895 0.99628 1.46722 1.37041 0.86610 0.76964 0.79715 0.84413 1.21423 1.20264 1.20393 1.22187 0.99196 0.94463 0.89112 0.91058 1.21948 1.01306 0.97242 0.95987 1.22193 1.02063 0.98615 0.96254 1.22511 0.94231 0.87049 0.97837 1.87839 1.59254 1.43899 1.39904 1.24118 1.02961 0.95722 0.84140 0.93409 0.92240 0.93648 0.95318 0.89565 0.96411 0.89335 0.95369 0.92969 0.91131 0.89844 0.91269 0.91622 0.93493 0.89685 0.90558 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.55 37.16 0.36 -2.02 16 2 C 0.05 0.89 4.36 -3.83 -0.02 0.88 16 3 N -0.52 -10.93 4.69 -219.94 -1.03 -11.96 16 4 C 0.20 4.92 1.82 -68.86 -0.13 4.79 16 5 H 0.05 1.30 5.98 -51.93 -0.31 0.99 16 6 C -0.18 -4.13 7.12 37.16 0.26 -3.86 16 7 C -0.50 -13.34 7.78 -34.44 -0.27 -13.60 16 8 H 0.06 1.66 6.77 -52.49 -0.36 1.30 16 9 C 0.06 1.56 5.18 -17.82 -0.09 1.46 16 10 N -0.89 -24.88 11.39 55.43 0.63 -24.25 16 11 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.06 1.10 2.11 -67.57 -0.14 0.96 16 16 H 0.07 1.30 7.64 -51.93 -0.40 0.90 16 17 C -0.13 -2.26 4.17 -26.54 -0.11 -2.37 16 18 C -0.15 -2.21 6.14 -26.59 -0.16 -2.37 16 19 C 0.06 0.88 6.84 37.20 0.25 1.14 16 20 O -0.39 -6.70 10.77 -35.23 -0.38 -7.08 16 21 C 0.01 0.14 4.62 37.20 0.17 0.31 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.04 0.69 6.57 -51.93 -0.34 0.35 16 25 H 0.03 0.55 4.35 -51.93 -0.23 0.32 16 26 H 0.09 1.82 6.21 -51.93 -0.32 1.50 16 27 H 0.02 0.38 5.12 -51.93 -0.27 0.11 16 28 H 0.09 2.32 5.82 -51.92 -0.30 2.02 16 29 H 0.03 0.61 5.14 -51.93 -0.27 0.35 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.08 1.66 4.67 -51.93 -0.24 1.42 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.46 3.87 -51.93 -0.20 1.26 16 38 H 0.09 1.53 5.57 -51.93 -0.29 1.25 16 LS Contribution 270.40 15.07 4.07 4.07 Total: -1.00 -27.34 270.40 -7.21 -34.55 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.61 Total: 3.29 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 0.13 Total: -14.68 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.40 Total: -36.21 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.38 Total: -7.08 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.34 -7.21 -34.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261135003.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.420 kcal (2) G-P(sol) polarization free energy of solvation -27.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds