Wall clock time and date at job start Mon Mar 30 2020 04:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29599 * 1 3 3 Si 1.86804 * 119.99626 * 2 1 4 4 H 1.48500 * 109.46911 * 239.99691 * 3 2 1 5 5 H 1.48496 * 109.47011 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46990 * 119.99632 * 3 2 1 7 7 C 1.46355 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00036 * 180.02562 * 7 2 1 9 9 C 1.41004 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.40846 * 119.81526 * 180.27444 * 9 7 2 11 11 C 1.38481 * 118.99249 * 180.29890 * 10 9 7 12 12 C 1.38637 * 118.56607 * 359.43732 * 11 10 9 13 13 N 1.48027 * 120.23245 * 180.30281 * 12 11 10 14 14 O 1.31692 * 120.00149 * 359.97438 * 13 12 11 15 15 O 1.31701 * 119.99545 * 179.97438 * 13 12 11 16 16 C 1.39694 * 119.52872 * 0.27874 * 12 11 10 17 17 Cl 1.73602 * 119.49890 * 180.02562 * 16 12 11 18 18 N 1.31056 * 120.99997 * 0.02562 * 16 12 11 19 19 H 0.97000 * 120.00187 * 0.02562 * 1 2 3 20 20 H 1.07998 * 120.50628 * 0.03386 * 10 9 7 21 21 H 1.08002 * 120.71943 * 179.71767 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2960 0.0000 0.0000 3 14 2.2299 1.6178 0.0000 4 1 3.0837 1.6965 -1.2125 5 1 1.2648 2.7464 -0.0006 6 1 3.0836 1.6966 1.2126 7 6 2.0278 -1.2674 0.0006 8 1 3.1078 -1.2674 0.0010 9 6 1.3228 -2.4886 0.0006 10 6 2.0310 -3.7060 0.0070 11 6 1.3215 -4.8953 0.0005 12 6 -0.0638 -4.8408 0.0000 13 7 -0.8588 -6.0894 0.0000 14 8 -0.2505 -7.2574 0.0000 15 8 -2.1746 -6.0322 -0.0001 16 6 -0.7040 -3.5991 -0.0001 17 17 -2.4387 -3.5318 -0.0001 18 7 -0.0148 -2.4844 -0.0001 19 1 -0.4850 0.8400 -0.0004 20 1 3.1109 -3.7121 0.0124 21 1 1.8362 -5.8448 0.0006 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261209966.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:39 Heat of formation + Delta-G solvation = 20.049229 kcal Electronic energy + Delta-G solvation = -13137.550628 eV Core-core repulsion = 10428.801697 eV Total energy + Delta-G solvation = -2708.748931 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 228.009 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.84969 -38.90497 -37.50098 -36.00979 -34.78504 -33.20231 -32.55276 -29.10083 -26.07857 -24.29198 -23.18429 -20.23517 -19.06347 -18.67196 -17.90334 -16.75530 -16.57262 -16.42372 -15.10899 -14.90104 -14.35458 -14.01179 -13.32401 -13.21093 -13.18978 -12.62807 -12.53009 -12.06693 -11.75774 -11.49479 -11.39545 -11.04693 -10.84650 -10.32044 -10.16567 -9.04760 -7.25172 -1.22555 0.44063 0.70651 0.85240 0.98500 1.37260 1.49821 1.59443 2.04324 2.27208 3.16487 3.70960 4.03249 4.13581 4.29454 4.47794 4.83224 4.94552 5.31405 5.42833 5.56628 5.78008 6.09933 6.41215 7.19910 7.66756 Molecular weight = 228.01amu Principal moments of inertia in cm(-1) A = 0.044271 B = 0.008792 C = 0.007354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.317903 B = 3183.929069 C = 3806.403343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.665 5.665 2 C -0.006 4.006 3 Si 1.016 2.984 4 H -0.243 1.243 5 H -0.267 1.267 6 H -0.243 1.243 7 C -0.252 4.252 8 H 0.160 0.840 9 C 0.152 3.848 10 C -0.210 4.210 11 C -0.037 4.037 12 C -0.194 4.194 13 N 0.048 4.952 14 O -0.356 6.356 15 O -0.313 6.313 16 C 0.272 3.728 17 Cl -0.024 7.024 18 N -0.473 5.473 19 H 0.316 0.684 20 H 0.171 0.829 21 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.296 9.756 0.007 12.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.281 5.281 2 C -0.241 4.241 3 Si 0.832 3.168 4 H -0.166 1.166 5 H -0.191 1.191 6 H -0.166 1.166 7 C -0.277 4.277 8 H 0.177 0.823 9 C 0.039 3.961 10 C -0.234 4.234 11 C -0.058 4.058 12 C -0.305 4.305 13 N 0.464 4.536 14 O -0.501 6.501 15 O -0.468 6.468 16 C 0.081 3.919 17 Cl 0.005 6.995 18 N -0.192 5.192 19 H 0.130 0.870 20 H 0.189 0.811 21 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.784 10.785 0.007 12.741 hybrid contribution -0.426 -1.016 -0.003 1.101 sum 6.357 9.770 0.004 11.656 Atomic orbital electron populations 1.69434 1.10834 1.34043 1.13805 1.29140 0.95923 1.05953 0.93104 0.84693 0.78581 0.71897 0.81670 1.16624 1.19091 1.16612 1.22947 0.97827 0.88044 1.18877 0.82302 1.19154 0.86809 0.94770 0.95412 1.22268 1.01637 0.89844 1.09607 1.20859 0.89109 1.00682 0.95167 1.20776 0.92255 0.80357 1.37073 1.49966 1.02487 1.03540 0.97617 1.96054 1.72963 1.14299 1.66784 1.96135 0.90501 1.96066 1.64095 1.21643 0.88386 0.88290 0.93610 1.98374 1.06934 1.98616 1.95605 1.68114 1.08974 1.23414 1.18699 0.87045 0.81139 0.83469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -25.48 11.60 23.18 0.27 -25.21 14 2 C -0.01 -0.20 5.67 87.14 0.49 0.29 14 3 Si 1.02 22.41 29.64 68.60 2.03 24.44 14 4 H -0.24 -5.06 7.11 99.48 0.71 -4.36 14 5 H -0.27 -5.96 7.11 99.48 0.71 -5.25 14 6 H -0.24 -5.06 7.11 99.48 0.71 -4.35 14 7 C -0.25 -8.69 9.41 25.06 0.24 -8.46 14 8 H 0.16 4.09 7.94 -2.91 -0.02 4.06 14 9 C 0.15 6.36 6.56 40.17 0.26 6.62 14 10 C -0.21 -7.88 9.86 22.97 0.23 -7.65 14 11 C -0.04 -1.57 9.68 22.42 0.22 -1.35 14 12 C -0.19 -9.72 6.95 36.82 0.26 -9.46 14 13 N 0.05 2.64 4.98 -45.39 -0.23 2.41 14 14 O -0.36 -19.82 19.21 3.53 0.07 -19.75 14 15 O -0.31 -17.51 16.62 3.51 0.06 -17.45 14 16 C 0.27 13.43 7.29 85.16 0.62 14.05 14 17 Cl -0.02 -1.11 25.95 -2.72 -0.07 -1.18 14 18 N -0.47 -22.44 7.96 -179.75 -1.43 -23.87 14 19 H 0.32 10.45 8.27 -92.71 -0.77 9.68 14 20 H 0.17 4.79 8.06 -2.91 -0.02 4.77 14 21 H 0.15 5.80 7.65 -2.91 -0.02 5.78 14 Total: -1.00 -60.55 224.62 4.30 -56.25 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.29 Total: 10.33 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 2.31 Total: -5.96 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -1.39 Total: -46.67 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: 0.13 Total: -37.20 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: 2.03 Total: 24.44 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.07 Total: -1.18 kcal Total: -60.55 4.30 -56.25 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261209966.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.299 kcal (2) G-P(sol) polarization free energy of solvation -60.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds