Wall clock time and date at job start Mon Mar 30 2020 03:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00374 * 2 1 4 4 C 1.53001 * 109.47431 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47006 * 65.00100 * 4 3 2 6 6 C 1.36934 * 120.00114 * 270.00243 * 5 4 3 7 7 H 1.08005 * 120.00489 * 141.78570 * 6 5 4 8 8 C 1.38809 * 119.99967 * 321.77795 * 6 5 4 9 9 N 1.31618 * 120.00238 * 339.29839 * 8 6 5 10 10 Si 1.86805 * 120.00291 * 159.29303 * 8 6 5 11 11 H 1.48495 * 109.46847 * 90.00069 * 10 8 6 12 12 H 1.48494 * 109.47115 * 210.00264 * 10 8 6 13 13 H 1.48501 * 109.46812 * 330.00239 * 10 8 6 14 14 C 1.46508 * 119.99833 * 90.00052 * 5 4 3 15 15 C 1.52998 * 109.46833 * 245.02605 * 14 5 4 16 16 C 1.53004 * 109.47133 * 179.97438 * 15 14 5 17 17 C 1.53006 * 109.46945 * 59.99765 * 16 15 14 18 18 C 1.52998 * 109.47221 * 300.00423 * 17 16 15 19 19 C 1.52997 * 109.47037 * 125.03054 * 14 5 4 20 20 H 1.08998 * 109.47092 * 59.99763 * 1 2 3 21 21 H 1.09005 * 109.47249 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47215 * 299.99667 * 1 2 3 23 23 H 1.09000 * 109.46761 * 59.99917 * 3 2 1 24 24 H 1.09000 * 109.47257 * 300.00252 * 3 2 1 25 25 H 1.08995 * 109.46860 * 304.99970 * 4 3 2 26 26 H 1.08998 * 109.46902 * 185.00358 * 4 3 2 27 27 H 0.96998 * 120.00807 * 180.02562 * 9 8 6 28 28 H 1.08996 * 109.47199 * 5.02724 * 14 5 4 29 29 H 1.09004 * 109.47553 * 299.99819 * 15 14 5 30 30 H 1.08999 * 109.47136 * 60.00405 * 15 14 5 31 31 H 1.08996 * 109.47053 * 300.00212 * 16 15 14 32 32 H 1.08996 * 109.47329 * 179.97438 * 16 15 14 33 33 H 1.08995 * 109.47081 * 179.97438 * 17 16 15 34 34 H 1.09009 * 109.46604 * 60.00348 * 17 16 15 35 35 H 1.08996 * 109.47126 * 299.99767 * 18 17 16 36 36 H 1.08999 * 109.46960 * 179.97438 * 18 17 16 37 37 H 1.09003 * 109.46992 * 299.99748 * 19 14 5 38 38 H 1.08999 * 109.47787 * 59.99459 * 19 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0967 -0.7970 -1.3369 7 1 3.8116 -1.3095 -2.2439 8 6 4.5859 -1.5184 -0.2567 9 7 5.3009 -0.9143 0.6686 10 14 4.2295 -3.3467 -0.1160 11 1 5.3032 -4.1141 -0.7967 12 1 4.1780 -3.7321 1.3171 13 1 2.9239 -3.6472 -0.7566 14 6 4.2864 1.4008 -2.4148 15 6 3.2875 1.1072 -3.5360 16 6 3.6115 1.9811 -4.7494 17 6 5.0292 1.6731 -5.2357 18 6 6.0280 1.9666 -4.1145 19 6 5.7038 1.0921 -2.9009 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6886 1.8463 0.8900 24 1 1.6887 1.8464 -0.8900 25 1 3.8514 0.5682 0.8409 26 1 3.9785 2.1765 0.0890 27 1 5.6432 -1.4184 1.4233 28 1 4.2192 2.4519 -2.1343 29 1 3.3546 0.0561 -3.8165 30 1 2.2777 1.3271 -3.1897 31 1 3.5441 3.0321 -4.4686 32 1 2.9002 1.7717 -5.5483 33 1 5.2599 2.2953 -6.1004 34 1 5.0966 0.6220 -5.5165 35 1 5.9605 3.0176 -3.8337 36 1 7.0378 1.7467 -4.4608 37 1 6.4154 1.3011 -2.1021 38 1 5.7710 0.0409 -3.1814 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316971379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:50 Heat of formation + Delta-G solvation = -61.732091 kcal Electronic energy + Delta-G solvation = -17143.408109 eV Core-core repulsion = 14599.161998 eV Total energy + Delta-G solvation = -2544.246111 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.68162 -38.43894 -36.25726 -33.21148 -31.44287 -31.18550 -28.96295 -27.14729 -25.64179 -23.30474 -23.09668 -21.74622 -20.56783 -18.22642 -17.39395 -16.69793 -16.54604 -16.02408 -15.63897 -15.22147 -15.16292 -14.84327 -14.58318 -13.78260 -13.42572 -13.35092 -12.98613 -12.86216 -12.72517 -12.52173 -12.33528 -12.29246 -12.03177 -11.82926 -11.71920 -11.51955 -11.16719 -10.94398 -10.81401 -10.35889 -10.28795 -8.38459 -7.68148 -5.27047 1.44589 1.48181 1.57756 2.59762 3.21623 3.41843 3.65065 4.02010 4.11581 4.30179 4.41206 4.53821 4.54434 4.57868 4.62086 4.71034 4.77758 4.80629 4.82419 4.85290 4.90507 4.96681 5.01521 5.10560 5.26397 5.38875 5.42669 5.48308 5.53066 5.74705 5.76659 5.79177 5.89459 6.54318 6.70136 7.32833 8.02954 8.53326 9.28215 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.011292 C = 0.008845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.014848 B = 2478.954337 C = 3164.827470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.057 3.943 4 C 0.140 3.860 5 N -0.588 5.588 6 C -0.217 4.217 7 H 0.040 0.960 8 C -0.032 4.032 9 N -0.922 5.922 10 Si 0.941 3.059 11 H -0.288 1.288 12 H -0.296 1.296 13 H -0.279 1.279 14 C 0.170 3.830 15 C -0.115 4.115 16 C -0.109 4.109 17 C -0.113 4.113 18 C -0.110 4.110 19 C -0.109 4.109 20 H 0.042 0.958 21 H 0.081 0.919 22 H 0.047 0.953 23 H 0.046 0.954 24 H 0.038 0.962 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.245 0.755 28 H 0.054 0.946 29 H 0.035 0.965 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.028 0.972 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.234 7.450 -7.264 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.022 4.022 4 C 0.013 3.987 5 N -0.308 5.308 6 C -0.348 4.348 7 H 0.058 0.942 8 C -0.227 4.227 9 N -0.568 5.568 10 Si 0.771 3.229 11 H -0.215 1.215 12 H -0.222 1.222 13 H -0.205 1.205 14 C 0.064 3.936 15 C -0.154 4.154 16 C -0.147 4.147 17 C -0.150 4.150 18 C -0.148 4.148 19 C -0.149 4.149 20 H 0.060 0.940 21 H 0.099 0.901 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.047 7.222 -7.116 11.326 hybrid contribution -0.288 -1.105 0.633 1.306 sum -5.335 6.117 -6.483 10.388 Atomic orbital electron populations 1.22810 0.81697 1.02529 1.00002 1.88141 1.19509 1.28781 1.95162 1.23247 0.96837 0.83904 0.98198 1.20955 0.89690 0.96114 0.91921 1.43948 1.75791 1.02313 1.08713 1.18698 1.33305 0.83261 0.99512 0.94209 1.25535 0.97460 1.00147 0.99603 1.70073 1.36516 1.36254 1.13970 0.85689 0.77837 0.83128 0.76220 1.21541 1.22236 1.20491 1.20587 0.92522 0.93026 0.87419 1.21831 0.98430 0.99002 0.96174 1.21492 0.96876 0.99607 0.96678 1.21498 0.94582 1.01147 0.97793 1.21522 0.98939 0.99498 0.94829 1.21719 0.97499 0.98953 0.96688 0.93985 0.90082 0.93462 0.93623 0.94423 0.91711 0.93261 0.94590 0.92811 0.94637 0.93881 0.91273 0.91357 0.90060 0.93295 0.91415 0.91970 0.95317 0.94586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.40 -17.65 10.18 -148.98 -1.52 -19.17 16 3 C 0.06 2.30 6.28 71.98 0.45 2.75 16 4 C 0.14 6.64 5.71 86.38 0.49 7.13 16 5 N -0.59 -29.15 2.34 -678.05 -1.59 -30.74 16 6 C -0.22 -12.07 7.56 84.03 0.64 -11.43 16 7 H 0.04 2.30 7.07 -2.91 -0.02 2.28 16 8 C -0.03 -1.82 4.97 84.86 0.42 -1.40 16 9 N -0.92 -55.35 11.47 21.65 0.25 -55.10 16 10 Si 0.94 47.48 29.60 68.60 2.03 49.51 16 11 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 12 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 13 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 14 C 0.17 7.03 2.64 44.99 0.12 7.14 16 15 C -0.11 -4.19 5.24 30.59 0.16 -4.03 16 16 C -0.11 -2.96 5.92 30.60 0.18 -2.78 16 17 C -0.11 -2.97 5.92 30.60 0.18 -2.79 16 18 C -0.11 -3.26 5.92 30.61 0.18 -3.08 16 19 C -0.11 -4.43 5.10 30.61 0.16 -4.28 16 20 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 22 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.07 3.62 5.54 -2.39 -0.01 3.60 16 26 H 0.05 2.15 7.88 -2.39 -0.02 2.13 16 27 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 28 H 0.05 2.08 7.77 -2.39 -0.02 2.06 16 29 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.04 1.64 7.56 -2.39 -0.02 1.62 16 Total: -1.00 -64.25 298.35 4.40 -59.86 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 0.99 Total: 6.31 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 4.23 Total: -10.67 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -1.34 Total: -85.84 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -1.52 Total: -19.17 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -64.25 4.40 -59.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316971379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.875 kcal (2) G-P(sol) polarization free energy of solvation -64.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds