Wall clock time and date at job start Mon Mar 30 2020 03:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46907 * 110.99945 * 2 1 4 4 C 1.50702 * 109.46815 * 66.04901 * 3 2 1 5 5 H 1.08000 * 120.00349 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99992 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99896 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00137 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46533 * 90.00400 * 8 6 4 10 10 H 1.48498 * 109.47059 * 209.99914 * 8 6 4 11 11 H 1.48498 * 109.46980 * 330.00335 * 8 6 4 12 12 C 1.46898 * 111.00001 * 236.04901 * 2 1 3 13 13 C 1.52992 * 109.47092 * 293.94797 * 12 2 1 14 14 H 1.08998 * 109.46862 * 55.00713 * 13 12 2 15 15 C 1.52997 * 109.47482 * 295.00148 * 13 12 2 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47328 * 60.00126 * 16 15 13 18 18 C 1.53002 * 109.46891 * 299.99597 * 17 16 15 19 19 C 1.52997 * 109.46978 * 60.00410 * 18 17 16 20 20 H 1.09000 * 109.47140 * 179.97438 * 19 18 17 21 21 O 1.42896 * 109.47412 * 59.99794 * 19 18 17 22 22 H 1.09000 * 109.46891 * 183.95293 * 1 2 3 23 23 H 1.09001 * 109.47194 * 303.95057 * 1 2 3 24 24 H 1.08991 * 109.47390 * 63.95176 * 1 2 3 25 25 H 1.08997 * 109.47406 * 186.04865 * 3 2 1 26 26 H 1.08998 * 109.47159 * 306.05114 * 3 2 1 27 27 H 0.96997 * 120.00242 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47308 * 173.94967 * 12 2 1 29 29 H 1.09006 * 109.47288 * 53.95609 * 12 2 1 30 30 H 1.09002 * 109.47153 * 59.99783 * 15 13 12 31 31 H 1.09001 * 109.46832 * 299.99974 * 15 13 12 32 32 H 1.09004 * 109.46724 * 180.02562 * 16 15 13 33 33 H 1.09001 * 109.47194 * 299.99650 * 16 15 13 34 34 H 1.08992 * 109.47554 * 59.99639 * 17 16 15 35 35 H 1.09004 * 109.47108 * 179.97438 * 17 16 15 36 36 H 1.09002 * 109.47097 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.47142 * 300.00176 * 18 17 16 38 38 H 0.96698 * 114.00134 * 60.00101 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0746 1.5112 2.0489 6 6 2.0267 3.3495 1.5286 7 7 2.7110 4.0023 0.6147 8 14 1.5817 4.1872 3.1379 9 1 2.6585 3.9512 4.1329 10 1 1.4292 5.6467 2.9105 11 1 0.3040 3.6296 3.6494 12 6 1.9954 -0.7659 -1.1376 13 6 1.6315 -2.2425 -0.9704 14 1 0.5533 -2.3388 -0.8434 15 6 2.3426 -2.8067 0.2612 16 6 1.9792 -4.2836 0.4280 17 6 2.4182 -5.0604 -0.8148 18 6 1.7070 -4.4962 -2.0464 19 6 2.0705 -3.0194 -2.2133 20 1 1.5642 -2.6175 -3.0910 21 8 3.4840 -2.8925 -2.3797 22 1 -0.3633 -1.0252 0.0708 23 1 -0.3633 0.5739 0.8525 24 1 -0.3634 0.4512 -0.9232 25 1 3.0797 1.3445 -0.1083 26 1 1.5610 1.9274 -0.8308 27 1 2.9849 4.9186 0.7764 28 1 3.0797 -0.6610 -1.1757 29 1 1.5611 -0.3871 -2.0629 30 1 2.0303 -2.2530 1.1466 31 1 3.4209 -2.7104 0.1341 32 1 2.4855 -4.6854 1.3057 33 1 0.9009 -4.3803 0.5550 34 1 3.4964 -4.9636 -0.9418 35 1 2.1597 -6.1126 -0.6958 36 1 2.0194 -5.0499 -2.9318 37 1 0.6287 -4.5929 -1.9195 38 1 3.8330 -3.3610 -3.1503 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382030250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:54 Heat of formation + Delta-G solvation = -70.165373 kcal Electronic energy + Delta-G solvation = -16560.702660 eV Core-core repulsion = 14016.090854 eV Total energy + Delta-G solvation = -2544.611806 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.31430 -36.33428 -34.80921 -32.65131 -30.96564 -29.71899 -27.08561 -26.09641 -23.73402 -22.41337 -21.26661 -19.91785 -19.29661 -16.74021 -16.29920 -15.45486 -15.07527 -14.49657 -14.28311 -14.06482 -13.71871 -13.23080 -12.88756 -12.64623 -12.07279 -11.94696 -11.77229 -11.60236 -11.25345 -11.06985 -10.83404 -10.70468 -10.59461 -10.45302 -10.30296 -10.10282 -9.90267 -9.60033 -9.51351 -9.07809 -8.37501 -7.11595 -5.96710 -3.97717 3.35846 3.41331 3.45014 4.38771 4.46790 4.74998 4.82885 4.97081 5.16537 5.34719 5.38500 5.47888 5.57241 5.59802 5.71252 5.75488 5.84053 5.99481 6.06716 6.15105 6.26799 6.28971 6.36142 6.39400 6.55664 6.60413 6.80122 6.83206 6.94070 7.40221 7.43829 7.78823 7.87260 8.18332 8.30522 8.64588 9.10243 9.66094 11.14306 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046244 B = 0.005802 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.335740 B = 4824.750912 C = 5023.044087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.538 5.538 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.065 3.935 13 C -0.073 4.073 14 H 0.076 0.924 15 C -0.101 4.101 16 C -0.120 4.120 17 C -0.114 4.114 18 C -0.149 4.149 19 C 0.109 3.891 20 H 0.048 0.952 21 O -0.555 6.555 22 H 0.044 0.956 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.029 0.971 26 H -0.011 1.011 27 H 0.260 0.740 28 H 0.074 0.926 29 H 0.015 0.985 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.117 -16.380 -5.482 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.263 5.263 3 C 0.068 3.932 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.064 4.064 13 C -0.092 4.092 14 H 0.094 0.906 15 C -0.139 4.139 16 C -0.158 4.158 17 C -0.151 4.151 18 C -0.187 4.187 19 C 0.050 3.950 20 H 0.066 0.934 21 O -0.359 6.359 22 H 0.063 0.937 23 H 0.091 0.909 24 H 0.026 0.974 25 H 0.047 0.953 26 H 0.006 0.994 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.033 0.967 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.943 -16.053 -4.531 16.793 hybrid contribution -0.475 0.616 -0.556 0.956 sum -2.418 -15.436 -5.087 16.432 Atomic orbital electron populations 1.22243 0.89473 0.99272 1.00320 1.62078 1.06480 1.17591 1.40106 1.19715 0.95394 0.81730 0.96408 1.21184 1.34595 0.96845 1.01700 0.91899 1.24998 0.95406 0.97384 0.96929 1.69967 1.38609 1.11394 1.34002 0.86505 0.78822 0.78394 0.83714 1.20648 1.21388 1.19907 1.22008 1.00610 0.91888 0.91875 1.21193 0.99593 0.94870 0.93503 0.90618 1.21374 1.00782 0.93536 0.98161 1.21576 1.00519 0.96621 0.97045 1.21432 1.00819 0.98170 0.94688 1.22229 1.01106 0.96855 0.98543 1.21841 0.81693 0.93768 0.97731 0.93423 1.86616 1.21854 1.76391 1.51079 0.93689 0.90890 0.97395 0.95273 0.99363 0.93005 0.90749 0.96662 0.90421 0.91625 0.92406 0.92660 0.91501 0.92902 0.92312 0.91387 0.78653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.06 0.55 1.27 16 2 N -0.54 -12.05 4.21 -244.38 -1.03 -13.08 16 3 C 0.19 5.24 4.72 -4.97 -0.02 5.21 16 4 C -0.50 -14.55 8.46 -34.44 -0.29 -14.84 16 5 H 0.06 1.79 7.12 -52.49 -0.37 1.41 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.06 1.25 4.13 -3.83 -0.02 1.23 16 13 C -0.07 -1.12 1.94 -90.62 -0.18 -1.29 16 14 H 0.08 1.14 6.34 -51.93 -0.33 0.81 16 15 C -0.10 -1.56 4.95 -26.73 -0.13 -1.70 16 16 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 17 C -0.11 -1.23 5.78 -26.73 -0.15 -1.39 16 18 C -0.15 -1.54 5.64 -26.73 -0.15 -1.69 16 19 C 0.11 1.38 3.21 -26.73 -0.09 1.29 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 O -0.56 -7.21 11.39 -35.23 -0.40 -7.61 16 22 H 0.04 0.77 6.37 -51.93 -0.33 0.44 16 23 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 24 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 25 H 0.03 0.85 7.93 -51.93 -0.41 0.44 16 26 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.07 1.55 7.62 -51.93 -0.40 1.16 16 29 H 0.02 0.30 8.12 -51.93 -0.42 -0.13 16 30 H 0.08 1.36 7.75 -51.93 -0.40 0.96 16 31 H 0.07 1.11 7.68 -51.93 -0.40 0.71 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.37 3.11 9.08 45.56 0.41 3.53 16 LS Contribution 294.97 15.07 4.45 4.45 Total: -1.00 -31.17 294.97 -7.92 -39.09 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.92 Total: -1.10 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -0.74 Total: -12.09 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: -0.29 Total: -39.77 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.40 Total: -7.61 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.17 -7.92 -39.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382030250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.073 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds