Wall clock time and date at job start Mon Mar 30 2020 03:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46907 * 110.99945 * 2 1 4 4 C 1.50702 * 109.46815 * 66.04901 * 3 2 1 5 5 H 1.08000 * 120.00349 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99992 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99896 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00137 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46533 * 90.00400 * 8 6 4 10 10 H 1.48498 * 109.47059 * 209.99914 * 8 6 4 11 11 H 1.48498 * 109.46980 * 330.00335 * 8 6 4 12 12 C 1.46898 * 111.00001 * 236.04901 * 2 1 3 13 13 C 1.52992 * 109.47092 * 293.94797 * 12 2 1 14 14 H 1.08998 * 109.46862 * 55.00713 * 13 12 2 15 15 C 1.52997 * 109.47482 * 295.00148 * 13 12 2 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47328 * 60.00126 * 16 15 13 18 18 C 1.53002 * 109.46891 * 299.99597 * 17 16 15 19 19 C 1.52997 * 109.46978 * 60.00410 * 18 17 16 20 20 H 1.09000 * 109.47140 * 179.97438 * 19 18 17 21 21 O 1.42896 * 109.47412 * 59.99794 * 19 18 17 22 22 H 1.09000 * 109.46891 * 183.95293 * 1 2 3 23 23 H 1.09001 * 109.47194 * 303.95057 * 1 2 3 24 24 H 1.08991 * 109.47390 * 63.95176 * 1 2 3 25 25 H 1.08997 * 109.47406 * 186.04865 * 3 2 1 26 26 H 1.08998 * 109.47159 * 306.05114 * 3 2 1 27 27 H 0.96997 * 120.00242 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47308 * 173.94967 * 12 2 1 29 29 H 1.09006 * 109.47288 * 53.95609 * 12 2 1 30 30 H 1.09002 * 109.47153 * 59.99783 * 15 13 12 31 31 H 1.09001 * 109.46832 * 299.99974 * 15 13 12 32 32 H 1.09004 * 109.46724 * 180.02562 * 16 15 13 33 33 H 1.09001 * 109.47194 * 299.99650 * 16 15 13 34 34 H 1.08992 * 109.47554 * 59.99639 * 17 16 15 35 35 H 1.09004 * 109.47108 * 179.97438 * 17 16 15 36 36 H 1.09002 * 109.47097 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.47142 * 300.00176 * 18 17 16 38 38 H 0.96698 * 114.00134 * 60.00101 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0746 1.5112 2.0489 6 6 2.0267 3.3495 1.5286 7 7 2.7110 4.0023 0.6147 8 14 1.5817 4.1872 3.1379 9 1 2.6585 3.9512 4.1329 10 1 1.4292 5.6467 2.9105 11 1 0.3040 3.6296 3.6494 12 6 1.9954 -0.7659 -1.1376 13 6 1.6315 -2.2425 -0.9704 14 1 0.5533 -2.3388 -0.8434 15 6 2.3426 -2.8067 0.2612 16 6 1.9792 -4.2836 0.4280 17 6 2.4182 -5.0604 -0.8148 18 6 1.7070 -4.4962 -2.0464 19 6 2.0705 -3.0194 -2.2133 20 1 1.5642 -2.6175 -3.0910 21 8 3.4840 -2.8925 -2.3797 22 1 -0.3633 -1.0252 0.0708 23 1 -0.3633 0.5739 0.8525 24 1 -0.3634 0.4512 -0.9232 25 1 3.0797 1.3445 -0.1083 26 1 1.5610 1.9274 -0.8308 27 1 2.9849 4.9186 0.7764 28 1 3.0797 -0.6610 -1.1757 29 1 1.5611 -0.3871 -2.0629 30 1 2.0303 -2.2530 1.1466 31 1 3.4209 -2.7104 0.1341 32 1 2.4855 -4.6854 1.3057 33 1 0.9009 -4.3803 0.5550 34 1 3.4964 -4.9636 -0.9418 35 1 2.1597 -6.1126 -0.6958 36 1 2.0194 -5.0499 -2.9318 37 1 0.6287 -4.5929 -1.9195 38 1 3.8330 -3.3610 -3.1503 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382030250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:54 Heat of formation + Delta-G solvation = -92.375545 kcal Electronic energy + Delta-G solvation = -16561.665765 eV Core-core repulsion = 14016.090854 eV Total energy + Delta-G solvation = -2545.574911 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.44630 -38.00749 -35.86254 -34.75159 -32.36696 -30.72693 -29.14021 -27.68439 -25.48837 -23.52539 -22.75322 -21.38605 -20.51020 -18.51519 -17.71340 -16.89297 -16.40541 -16.20273 -15.93959 -15.30483 -15.04911 -14.75857 -14.38832 -13.89350 -13.68021 -13.35834 -13.27085 -12.86564 -12.77497 -12.71195 -12.45390 -12.35140 -12.26121 -11.97503 -11.64418 -11.53433 -11.35609 -11.21725 -10.75231 -10.61830 -10.49133 -8.98848 -8.20860 -6.31798 1.40402 1.42954 1.53918 2.40126 3.11127 3.31041 3.45926 3.86359 3.94952 3.98183 4.20394 4.38317 4.47710 4.48728 4.58334 4.60350 4.69727 4.70632 4.81117 4.90398 5.02573 5.06445 5.10676 5.16159 5.17897 5.31102 5.33649 5.38082 5.44568 5.58438 5.64971 5.70052 6.04600 6.34910 6.64701 6.84868 7.03702 7.38108 8.90706 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046244 B = 0.005802 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.335740 B = 4824.750912 C = 5023.044087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.544 5.544 3 C 0.208 3.792 4 C -0.523 4.523 5 H 0.065 0.935 6 C -0.002 4.002 7 N -0.938 5.938 8 Si 0.974 3.026 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.262 1.262 12 C 0.069 3.931 13 C -0.068 4.068 14 H 0.087 0.913 15 C -0.097 4.097 16 C -0.116 4.116 17 C -0.111 4.111 18 C -0.142 4.142 19 C 0.110 3.890 20 H 0.055 0.945 21 O -0.578 6.578 22 H 0.082 0.918 23 H 0.057 0.943 24 H 0.007 0.993 25 H -0.004 1.004 26 H -0.042 1.042 27 H 0.265 0.735 28 H 0.048 0.952 29 H 0.013 0.987 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.375 -18.231 -5.145 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.268 5.268 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.083 0.917 6 C -0.199 4.199 7 N -0.578 5.578 8 Si 0.798 3.202 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.186 1.186 12 C -0.059 4.059 13 C -0.086 4.086 14 H 0.105 0.895 15 C -0.135 4.135 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.179 4.179 19 C 0.051 3.949 20 H 0.073 0.927 21 O -0.385 6.385 22 H 0.101 0.899 23 H 0.076 0.924 24 H 0.026 0.974 25 H 0.014 0.986 26 H -0.024 1.024 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.205 -17.938 -4.213 18.703 hybrid contribution -0.034 1.183 -0.715 1.382 sum -3.239 -16.756 -4.927 17.763 Atomic orbital electron populations 1.22251 0.87677 1.01358 0.99585 1.62015 1.08100 1.14781 1.41877 1.19368 0.93270 0.84195 0.95052 1.21475 1.34905 0.97514 1.02208 0.91680 1.25989 0.94956 0.98059 1.00917 1.70105 1.39490 1.11899 1.36317 0.85317 0.79025 0.77193 0.78672 1.19868 1.20669 1.18598 1.22026 0.98900 0.94409 0.90614 1.21168 1.00198 0.91989 0.95261 0.89514 1.21277 0.99332 0.95850 0.97019 1.21542 1.01253 0.94167 0.98355 1.21423 1.00375 0.99124 0.93965 1.22182 1.01678 0.94779 0.99303 1.21800 0.81663 0.95208 0.96242 0.92670 1.86576 1.22208 1.77219 1.52538 0.89942 0.92439 0.97404 0.98623 1.02400 0.92674 0.93294 0.96903 0.93150 0.93826 0.92019 0.91573 0.92370 0.90693 0.89814 0.90326 0.76337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.14 127.69 1.17 2.74 16 2 N -0.54 -25.04 4.21 -927.07 -3.90 -28.94 16 3 C 0.21 11.84 4.72 85.56 0.40 12.25 16 4 C -0.52 -30.90 8.46 25.60 0.22 -30.68 16 5 H 0.07 3.74 7.12 -2.91 -0.02 3.72 16 6 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 7 N -0.94 -58.53 13.29 21.45 0.28 -58.25 16 8 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 12 C 0.07 2.72 4.13 86.30 0.36 3.08 16 13 C -0.07 -2.01 1.94 -10.79 -0.02 -2.03 16 14 H 0.09 2.39 6.34 -2.39 -0.02 2.38 16 15 C -0.10 -2.98 4.95 30.59 0.15 -2.83 16 16 C -0.12 -2.62 5.92 30.59 0.18 -2.44 16 17 C -0.11 -2.07 5.78 30.59 0.18 -1.89 16 18 C -0.14 -2.40 5.64 30.59 0.17 -2.22 16 19 C 0.11 2.55 3.21 30.60 0.10 2.65 16 20 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 21 O -0.58 -14.42 11.39 -148.98 -1.70 -16.12 16 22 H 0.08 2.66 6.37 -2.39 -0.02 2.64 16 23 H 0.06 2.46 6.76 -2.39 -0.02 2.45 16 24 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 25 H 0.00 -0.27 7.93 -2.39 -0.02 -0.29 16 26 H -0.04 -2.57 8.12 -2.39 -0.02 -2.59 16 27 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.05 2.16 7.62 -2.39 -0.02 2.14 16 29 H 0.01 0.51 8.12 -2.38 -0.02 0.49 16 30 H 0.05 1.79 7.75 -2.39 -0.02 1.77 16 31 H 0.04 1.50 7.68 -2.39 -0.02 1.49 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.20 7.68 -2.39 -0.02 1.18 16 35 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.39 5.88 9.08 -74.06 -0.67 5.21 16 Total: -1.00 -69.18 294.97 0.42 -68.75 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.34 Total: 8.09 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 3.37 Total: -21.01 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -3.62 Total: -87.19 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -1.70 Total: -16.12 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -69.18 0.42 -68.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382030250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.621 kcal (2) G-P(sol) polarization free energy of solvation -69.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds