Wall clock time and date at job start Mon Mar 30 2020 03:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.08996 * 110.62836 * 333.09953 * 3 2 1 5 5 C 1.55137 * 110.70658 * 96.39743 * 3 2 1 6 6 C 1.54909 * 101.65543 * 154.03419 * 5 3 2 7 7 N 1.47843 * 104.79604 * 322.93520 * 6 5 3 8 8 C 1.46900 * 111.00436 * 146.35979 * 7 6 5 9 9 C 1.52998 * 109.47072 * 69.15615 * 8 7 6 10 10 C 1.52998 * 109.47339 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47339 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47297 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99883 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00326 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00191 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99880 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.47106 * 90.00147 * 16 14 12 18 18 H 1.48503 * 109.47120 * 210.00403 * 16 14 12 19 19 H 1.48504 * 109.47145 * 330.00123 * 16 14 12 20 20 C 1.47443 * 108.56780 * 24.08836 * 7 6 5 21 21 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 22 22 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 24 24 H 1.08996 * 110.99313 * 272.12699 * 5 3 2 25 25 H 1.08999 * 110.99066 * 35.94566 * 5 3 2 26 26 H 1.08993 * 110.37940 * 204.09753 * 6 5 3 27 27 H 1.09000 * 110.46507 * 81.80715 * 6 5 3 28 28 H 1.09000 * 109.46823 * 189.15332 * 8 7 6 29 29 H 1.08999 * 109.46853 * 309.15546 * 8 7 6 30 30 H 1.09001 * 109.47111 * 300.00354 * 9 8 7 31 31 H 1.09002 * 109.46958 * 59.99872 * 9 8 7 32 32 H 1.09000 * 109.46640 * 299.99769 * 10 9 8 33 33 H 1.08999 * 109.46769 * 59.99820 * 10 9 8 34 34 H 1.09001 * 109.46718 * 299.99924 * 11 10 9 35 35 H 1.08998 * 109.47244 * 59.99387 * 11 10 9 36 36 H 0.97000 * 119.99784 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.89042 * 239.60805 * 20 7 6 38 38 H 1.09003 * 110.02216 * 118.49642 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3354 2.0262 -0.4615 5 6 2.3811 1.7408 1.4421 6 6 3.5288 2.7476 1.1797 7 7 4.2777 2.1776 0.0396 8 6 4.8214 3.2399 -0.8171 9 6 5.9346 3.9775 -0.0704 10 6 6.5005 5.0843 -0.9623 11 6 7.6141 5.8216 -0.2158 12 6 8.1711 6.9121 -1.0941 13 1 7.7711 7.0639 -2.0858 14 6 9.1920 7.7154 -0.6321 15 7 9.6783 8.6668 -1.3988 16 14 9.8843 7.4524 1.0828 17 1 11.0087 6.4846 1.0195 18 1 10.3744 8.7462 1.6225 19 1 8.8200 6.9175 1.9696 20 6 3.3742 1.2954 -0.7217 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 1.5382 2.2285 1.9317 25 1 2.7329 0.8917 2.0280 26 1 4.1726 2.8258 2.0557 27 1 3.1253 3.7256 0.9177 28 1 5.2252 2.8001 -1.7290 29 1 4.0280 3.9422 -1.0727 30 1 5.5308 4.4171 0.8417 31 1 6.7279 3.2751 0.1853 32 1 6.9042 4.6450 -1.8745 33 1 5.7069 5.7866 -1.2175 34 1 7.2108 6.2608 0.6966 35 1 8.4075 5.1190 0.0391 36 1 10.3963 9.2322 -1.0736 37 1 3.7755 0.2822 -0.7421 38 1 3.2581 1.6686 -1.7392 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395476249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:41 Heat of formation + Delta-G solvation = -59.010103 kcal Electronic energy + Delta-G solvation = -15586.552487 eV Core-core repulsion = 13042.424410 eV Total energy + Delta-G solvation = -2544.128077 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.60726 -37.30512 -34.82315 -32.60405 -31.02320 -29.17559 -28.17280 -26.43424 -24.55294 -22.05749 -21.28524 -20.49479 -19.95829 -17.22264 -16.60310 -16.33531 -15.33795 -15.12933 -14.76297 -14.47391 -14.14931 -13.51059 -13.29121 -12.87829 -12.51297 -12.51020 -12.05988 -11.76724 -11.66734 -11.52406 -11.42570 -11.03779 -10.92354 -10.73245 -10.46352 -9.85637 -9.83817 -9.63484 -9.44927 -9.11718 -8.49708 -8.34550 -6.00514 -3.97989 3.34369 3.38410 3.41207 3.45940 3.93561 4.38295 4.49328 4.53926 4.72151 4.98749 5.03003 5.09592 5.20067 5.27695 5.32739 5.34182 5.41447 5.52000 5.61445 5.78325 5.82858 5.83430 5.90842 6.06018 6.13978 6.41384 6.68795 6.80810 6.89434 6.92018 6.96254 7.13284 7.38094 7.51069 7.84979 8.58926 9.04804 9.62651 11.13158 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.069839 B = 0.003937 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.825973 B = 7110.147598 C = 7327.490323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.066 3.934 4 H 0.068 0.932 5 C -0.150 4.150 6 C 0.043 3.957 7 N -0.525 5.525 8 C 0.050 3.950 9 C -0.115 4.115 10 C -0.102 4.102 11 C -0.014 4.014 12 C -0.520 4.520 13 H 0.070 0.930 14 C 0.064 3.936 15 N -0.906 5.906 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.265 1.265 20 C 0.044 3.956 21 H 0.040 0.960 22 H 0.086 0.914 23 H 0.041 0.959 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.034 0.966 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.014 0.986 35 H 0.011 0.989 36 H 0.262 0.738 37 H 0.088 0.912 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.820 -15.510 4.451 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C 0.007 3.993 4 H 0.086 0.914 5 C -0.188 4.188 6 C -0.085 4.085 7 N -0.250 5.250 8 C -0.077 4.077 9 C -0.153 4.153 10 C -0.140 4.140 11 C -0.051 4.051 12 C -0.558 4.558 13 H 0.088 0.912 14 C -0.137 4.137 15 N -0.546 5.546 16 Si 0.709 3.291 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.190 1.190 20 C -0.084 4.084 21 H 0.059 0.941 22 H 0.104 0.896 23 H 0.059 0.941 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.157 -15.823 4.616 23.792 hybrid contribution -0.445 0.758 0.521 1.022 sum -17.603 -15.065 5.138 23.732 Atomic orbital electron populations 1.22792 0.81138 1.02745 0.99925 1.87922 1.19566 1.27198 1.94919 1.23450 0.95208 0.84678 0.95971 0.91413 1.23191 0.98445 1.00063 0.97120 1.23002 0.94088 0.96067 0.95314 1.63657 1.32876 1.19415 1.09098 1.22473 0.97338 0.91891 0.96045 1.21660 0.97088 0.97732 0.98816 1.21429 0.98695 0.95672 0.98195 1.19563 0.93812 0.95518 0.96212 1.21198 1.18092 1.14239 1.02229 0.91150 1.25052 0.96356 0.94879 0.97376 1.69923 1.27449 1.20308 1.36885 0.86754 0.79646 0.77417 0.85331 1.20288 1.21481 1.18993 1.22844 0.89979 0.99611 0.95950 0.94092 0.89587 0.94054 0.90945 0.89642 0.89701 0.93179 0.90752 0.94823 0.92670 0.91604 0.92843 0.93115 0.96793 0.97050 0.92815 0.89370 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.85 101.05 1.10 1.32 16 2 O -0.38 -3.99 10.43 -35.23 -0.37 -4.36 16 3 C 0.07 0.67 3.44 -24.91 -0.09 0.58 16 4 H 0.07 0.62 7.82 -51.93 -0.41 0.21 16 5 C -0.15 -1.48 6.80 -24.59 -0.17 -1.65 16 6 C 0.04 0.49 5.78 -2.30 -0.01 0.48 16 7 N -0.53 -6.84 5.16 -231.25 -1.19 -8.04 16 8 C 0.05 0.70 4.57 -3.82 -0.02 0.68 16 9 C -0.12 -1.90 5.26 -26.73 -0.14 -2.04 16 10 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 11 C -0.01 -0.33 4.04 -27.89 -0.11 -0.45 16 12 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 13 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 14 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 15 N -0.91 -28.51 13.96 55.43 0.77 -27.74 16 16 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 19 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 20 C 0.04 0.51 6.63 -2.84 -0.02 0.49 16 21 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 22 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.04 0.26 8.11 -51.93 -0.42 -0.16 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.57 7.62 -51.93 -0.40 0.18 16 28 H 0.07 1.02 8.03 -51.93 -0.42 0.60 16 29 H 0.03 0.46 7.85 -51.93 -0.41 0.05 16 30 H 0.05 0.90 7.49 -51.93 -0.39 0.51 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 35 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 37 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16 38 H 0.06 0.65 7.56 -51.93 -0.39 0.26 16 LS Contribution 304.17 15.07 4.58 4.58 Total: -1.00 -31.58 304.17 -7.88 -39.47 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -6.98 Total: -4.99 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -0.03 Total: -16.48 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.42 Total: -35.78 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.37 Total: -4.36 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.58 -7.88 -39.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395476249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.545 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds