Wall clock time and date at job start Mon Mar 30 2020 03:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99713 * 2 1 4 4 H 1.09001 * 109.47143 * 30.00162 * 3 2 1 5 5 C 1.53001 * 109.46773 * 149.99617 * 3 2 1 6 6 N 1.46897 * 109.47528 * 300.00020 * 5 3 2 7 7 C 1.46906 * 110.99814 * 293.95568 * 6 5 3 8 8 C 1.46905 * 111.00158 * 170.00206 * 6 5 3 9 9 C 1.50695 * 109.46944 * 189.99717 * 8 6 5 10 10 H 1.08001 * 120.00376 * 0.02562 * 9 8 6 11 11 C 1.37879 * 119.99938 * 179.97438 * 9 8 6 12 12 N 1.31517 * 119.99874 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00221 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.46864 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47065 * 119.99864 * 13 11 9 16 16 H 1.48496 * 109.47109 * 239.99905 * 13 11 9 17 17 C 1.52995 * 109.47006 * 269.99601 * 3 2 1 18 18 C 1.53787 * 113.61351 * 157.49662 * 17 3 2 19 19 C 1.53773 * 87.08327 * 220.01996 * 18 17 3 20 20 C 1.53784 * 113.61298 * 60.00184 * 17 3 2 21 21 H 1.09001 * 109.46814 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47058 * 299.99777 * 1 2 3 23 23 H 1.08997 * 109.46692 * 60.00295 * 1 2 3 24 24 H 1.09009 * 109.46667 * 179.97438 * 5 3 2 25 25 H 1.09002 * 109.47365 * 60.00334 * 5 3 2 26 26 H 1.08992 * 109.47459 * 59.99744 * 7 6 5 27 27 H 1.09004 * 109.47040 * 179.97438 * 7 6 5 28 28 H 1.09000 * 109.47033 * 299.99847 * 7 6 5 29 29 H 1.09002 * 109.46783 * 309.99945 * 8 6 5 30 30 H 1.09002 * 109.46955 * 69.99566 * 8 6 5 31 31 H 0.97002 * 120.00020 * 179.97438 * 12 11 9 32 32 H 1.08993 * 112.85246 * 288.80272 * 17 3 2 33 33 H 1.09003 * 113.61414 * 334.57029 * 18 17 3 34 34 H 1.08997 * 113.61104 * 105.46951 * 18 17 3 35 35 H 1.08993 * 113.61519 * 270.88517 * 19 18 17 36 36 H 1.08998 * 113.69376 * 139.98929 * 19 18 17 37 37 H 1.08991 * 113.61640 * 254.52891 * 20 17 3 38 38 H 1.08997 * 113.61260 * 25.43522 * 20 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3588 1.2633 0.7214 6 7 3.1597 0.8160 2.1063 7 6 2.3847 1.8018 2.8716 8 6 4.4455 0.5356 2.7591 9 6 4.2000 -0.1481 4.0794 10 1 3.1898 -0.3541 4.4013 11 6 5.2650 -0.5116 4.8761 12 7 6.4951 -0.2612 4.4839 13 14 4.9607 -1.3597 6.5124 14 1 3.4998 -1.5258 6.7196 15 1 5.6143 -2.6932 6.5078 16 1 5.5264 -0.5350 7.6101 17 6 2.2177 1.7714 -1.4425 18 6 2.3077 3.2995 -1.5894 19 6 1.4686 3.1472 -2.8690 20 6 0.9163 1.8484 -2.2581 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 3.8024 2.2591 0.7209 25 1 4.0242 0.5694 0.2076 26 1 1.4093 1.9388 2.4049 27 1 2.2515 1.4455 3.8931 28 1 2.9179 2.7524 2.8846 29 1 5.0437 -0.1134 2.1195 30 1 4.9789 1.4710 2.9279 31 1 7.2444 -0.5166 5.0445 32 1 3.0196 1.2347 -1.9494 33 1 1.7979 3.8453 -0.7954 34 1 3.3195 3.6618 -1.7712 35 1 2.0662 2.9878 -3.7665 36 1 0.7158 3.9253 -2.9944 37 1 0.8048 1.0393 -2.9798 38 1 0.0262 1.9975 -1.6470 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595344114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:14 Heat of formation + Delta-G solvation = -44.450179 kcal Electronic energy + Delta-G solvation = -16426.434445 eV Core-core repulsion = 13882.937734 eV Total energy + Delta-G solvation = -2543.496711 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.67034 -38.25545 -37.37090 -34.69981 -31.55211 -29.10053 -27.45563 -27.23317 -26.42076 -25.33480 -22.84622 -21.57587 -20.35288 -18.52672 -17.65365 -17.14337 -16.57937 -16.22390 -15.94819 -15.62265 -15.41628 -14.71101 -14.45426 -13.90551 -13.51204 -13.45626 -13.15251 -13.01633 -12.87148 -12.70859 -12.58610 -12.44990 -12.27842 -12.06170 -11.92059 -11.48151 -11.36415 -11.13829 -10.99429 -10.62746 -10.07585 -8.95943 -8.20509 -6.30783 1.40356 1.41721 1.55516 2.40572 2.94112 3.11604 3.27545 3.69480 3.82326 3.87686 4.00298 4.09707 4.38819 4.42937 4.53476 4.58299 4.63307 4.64461 4.72499 4.84604 4.85301 4.87623 4.96437 5.02574 5.07121 5.09929 5.13104 5.15977 5.29318 5.36072 5.58906 5.64860 6.04971 6.33721 6.48216 6.67325 6.85545 7.38888 8.91083 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046109 B = 0.005707 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.106755 B = 4905.337622 C = 5205.840712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.394 6.394 3 C 0.116 3.884 4 H 0.065 0.935 5 C 0.057 3.943 6 N -0.543 5.543 7 C 0.042 3.958 8 C 0.207 3.793 9 C -0.522 4.522 10 H 0.062 0.938 11 C 0.000 4.000 12 N -0.936 5.936 13 Si 0.972 3.028 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.276 1.276 17 C -0.139 4.139 18 C -0.135 4.135 19 C -0.131 4.131 20 C -0.131 4.131 21 H 0.086 0.914 22 H 0.037 0.963 23 H 0.064 0.936 24 H 0.040 0.960 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.012 0.988 29 H -0.002 1.002 30 H -0.037 1.037 31 H 0.265 0.735 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.678 6.722 -12.337 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.312 6.312 3 C 0.058 3.942 4 H 0.083 0.917 5 C -0.071 4.071 6 N -0.267 5.267 7 C -0.107 4.107 8 C 0.081 3.919 9 C -0.560 4.560 10 H 0.080 0.920 11 C -0.198 4.198 12 N -0.577 5.577 13 Si 0.797 3.203 14 H -0.187 1.187 15 H -0.204 1.204 16 H -0.202 1.202 17 C -0.158 4.158 18 C -0.173 4.173 19 C -0.168 4.168 20 C -0.168 4.168 21 H 0.104 0.896 22 H 0.055 0.945 23 H 0.082 0.918 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.031 0.969 29 H 0.016 0.984 30 H -0.020 1.020 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.664 6.096 -12.298 18.675 hybrid contribution 0.871 0.382 0.936 1.334 sum -11.793 6.478 -11.361 17.611 Atomic orbital electron populations 1.23058 0.80634 1.03196 1.00552 1.87969 1.20499 1.27813 1.94965 1.22083 0.93217 0.84738 0.94182 0.91736 1.22223 0.97094 0.98076 0.89736 1.61964 1.19736 1.43408 1.01547 1.22222 0.97237 0.92326 0.98873 1.19388 0.85741 0.93130 0.93625 1.21489 0.93172 1.37972 1.03360 0.91985 1.25952 0.94616 0.96713 1.02510 1.70102 0.99090 1.48927 1.39592 0.85290 0.78643 0.77997 0.78411 1.18731 1.20394 1.20156 1.23098 1.00088 0.97490 0.95107 1.22948 1.01044 0.94318 0.98981 1.22783 0.99472 0.97650 0.96903 1.22968 0.96373 0.98574 0.98903 0.89594 0.94457 0.91815 0.94180 0.92715 0.90823 0.92460 0.96923 0.98374 1.01975 0.92663 0.89725 0.89844 0.91423 0.89635 0.90108 0.91126 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.57 113.37 1.20 1.73 16 2 O -0.39 -13.31 10.16 -148.98 -1.51 -14.82 16 3 C 0.12 3.53 1.90 30.59 0.06 3.59 16 4 H 0.06 1.83 6.00 -2.39 -0.01 1.81 16 5 C 0.06 2.21 4.64 86.30 0.40 2.61 16 6 N -0.54 -25.20 4.62 -927.02 -4.28 -29.48 16 7 C 0.04 1.67 9.14 127.69 1.17 2.84 16 8 C 0.21 11.74 4.72 85.55 0.40 12.14 16 9 C -0.52 -30.90 8.46 25.60 0.22 -30.68 16 10 H 0.06 3.62 7.12 -2.91 -0.02 3.60 16 11 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 12 N -0.94 -58.03 13.29 21.45 0.28 -57.75 16 13 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 14 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 C -0.14 -3.35 3.36 -10.27 -0.03 -3.38 16 18 C -0.14 -2.70 7.63 31.12 0.24 -2.46 16 19 C -0.13 -2.09 8.08 31.12 0.25 -1.84 16 20 C -0.13 -2.44 6.18 31.12 0.19 -2.24 16 21 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.04 0.89 8.08 -2.39 -0.02 0.87 16 23 H 0.06 1.23 4.95 -2.39 -0.01 1.22 16 24 H 0.04 1.48 8.12 -2.38 -0.02 1.46 16 25 H 0.05 2.28 7.93 -2.39 -0.02 2.26 16 26 H 0.07 2.44 6.47 -2.39 -0.02 2.43 16 27 H 0.06 2.48 6.76 -2.38 -0.02 2.46 16 28 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.00 -0.11 7.93 -2.39 -0.02 -0.13 16 30 H -0.04 -2.26 8.12 -2.39 -0.02 -2.28 16 31 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.08 1.60 7.96 -2.39 -0.02 1.59 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.51 6.33 -2.39 -0.02 1.49 16 Total: -1.00 -67.93 300.15 2.07 -65.85 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.01 Total: 5.93 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 4.55 Total: -17.25 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -4.00 Total: -87.23 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -1.51 Total: -14.82 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -67.93 2.07 -65.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595344114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.404 kcal (2) G-P(sol) polarization free energy of solvation -67.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds