Wall clock time and date at job start Mon Mar 30 2020 03:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 14 14 N 1.45396 * 111.00449 * 270.00208 * 13 2 1 15 15 C 1.46953 * 111.00298 * 243.79932 * 14 13 2 16 16 C 1.53045 * 109.36704 * 176.80927 * 15 14 13 17 17 N 1.46959 * 109.36053 * 58.40539 * 16 15 14 18 18 C 1.46903 * 110.99756 * 176.81363 * 17 16 15 19 19 C 1.46959 * 110.88020 * 300.67641 * 17 16 15 20 20 C 1.46954 * 110.99699 * 119.99919 * 14 13 2 21 21 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 23 23 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 24 24 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 25 25 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 26 26 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 27 27 H 1.00907 * 110.99751 * 146.04948 * 13 2 1 28 28 H 1.09003 * 109.49079 * 296.78087 * 15 14 13 29 29 H 1.09000 * 109.48804 * 56.84130 * 15 14 13 30 30 H 1.09001 * 109.49313 * 298.43731 * 16 15 14 31 31 H 1.09000 * 109.50596 * 178.37767 * 16 15 14 32 32 H 1.09000 * 109.47146 * 183.79681 * 18 17 16 33 33 H 1.09000 * 109.47253 * 303.79157 * 18 17 16 34 34 H 1.08999 * 109.47276 * 63.79583 * 18 17 16 35 35 H 1.09003 * 109.49115 * 299.35568 * 19 17 16 36 36 H 1.09000 * 109.50700 * 179.30340 * 19 17 16 37 37 H 1.08997 * 109.49487 * 303.15638 * 20 14 13 38 38 H 1.09000 * 109.49297 * 63.22885 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2994 9 14 6.0922 -1.0621 -2.4360 10 1 6.7001 -2.2147 -1.7239 11 1 6.5298 -1.0702 -3.8551 12 1 6.5267 0.2031 -1.7914 13 7 2.0196 -0.6924 1.1995 14 7 2.1933 0.2375 2.3037 15 6 3.6053 0.3250 2.7015 16 6 3.7566 1.3699 3.8094 17 7 2.9128 0.9939 4.9523 18 6 3.0882 1.9335 6.0679 19 6 1.5008 0.9064 4.5546 20 6 1.3495 -0.1385 3.4465 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.6054 -0.2617 -2.1370 25 1 1.7517 -1.7715 -1.2055 26 1 4.0609 -2.2444 -4.0348 27 1 2.8769 -1.1883 1.0062 28 1 3.9405 -0.6452 3.0683 29 1 4.2079 0.6170 1.8415 30 1 3.4470 2.3454 3.4342 31 1 4.7985 1.4161 4.1263 32 1 2.5044 1.5945 6.9236 33 1 4.1421 1.9790 6.3422 34 1 2.7483 2.9240 5.7655 35 1 1.1655 1.8766 4.1878 36 1 0.8978 0.6146 5.4144 37 1 0.3075 -0.1844 3.1298 38 1 1.6591 -1.1139 3.8219 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695780589.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:48 Heat of formation + Delta-G solvation = 28.537990 kcal Electronic energy + Delta-G solvation = -16512.009490 eV Core-core repulsion = 14003.970534 eV Total energy + Delta-G solvation = -2508.038955 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.169 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.90568 -36.21121 -33.83832 -32.17066 -30.79447 -29.03804 -27.33588 -26.02583 -23.39468 -23.19337 -22.65222 -19.63718 -19.24386 -16.43377 -16.31285 -15.20048 -14.91076 -14.86818 -14.58632 -14.52791 -13.98592 -13.45462 -12.76000 -12.43496 -12.26504 -11.94490 -11.79649 -11.66475 -11.38794 -11.25664 -11.12306 -10.84128 -10.80557 -10.62504 -10.38328 -10.24784 -9.26111 -9.10296 -8.58006 -8.41716 -8.35677 -7.46752 -6.04245 -4.07649 3.28115 3.35199 3.37322 3.86262 3.91905 4.41607 4.91476 5.03051 5.22959 5.28208 5.32355 5.49348 5.52883 5.54779 5.66719 5.72681 5.80337 5.89254 6.10561 6.14692 6.17030 6.23441 6.32247 6.49778 6.77048 6.93110 6.98576 7.00338 7.04746 7.31150 7.52300 7.63638 7.95416 8.07129 8.33517 8.42693 8.98637 9.56757 11.06554 Molecular weight = 227.17amu Principal moments of inertia in cm(-1) A = 0.030162 B = 0.007048 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.092319 B = 3971.992272 C = 4745.696893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.097 3.903 3 H 0.045 0.955 4 C 0.016 3.984 5 C -0.525 4.525 6 H 0.051 0.949 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.521 5.521 14 N -0.385 5.385 15 C 0.032 3.968 16 C 0.062 3.938 17 N -0.547 5.547 18 C 0.026 3.974 19 C 0.058 3.942 20 C 0.072 3.928 21 H 0.049 0.951 22 H 0.039 0.961 23 H 0.046 0.954 24 H 0.025 0.975 25 H 0.024 0.976 26 H 0.261 0.739 27 H 0.348 0.652 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.024 0.976 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.276 5.773 14.744 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.013 4.013 3 H 0.063 0.937 4 C -0.022 4.022 5 C -0.563 4.563 6 H 0.069 0.931 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.245 5.245 14 N -0.200 5.200 15 C -0.098 4.098 16 C -0.067 4.067 17 N -0.272 5.272 18 C -0.122 4.122 19 C -0.071 4.071 20 C -0.057 4.057 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.168 0.832 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.884 5.466 14.754 15.996 hybrid contribution 1.984 0.494 -0.432 2.089 sum -0.901 5.960 14.322 15.539 Atomic orbital electron populations 1.21732 0.96640 1.00826 0.99576 1.21621 0.93291 0.97154 0.89245 0.93722 1.19366 0.95485 0.96156 0.91200 1.21171 0.92201 1.34504 1.08422 0.93089 1.24986 0.98203 0.95170 0.95677 1.69958 1.35490 1.35505 1.11920 0.86651 0.86004 0.78393 0.77297 1.20632 1.21180 1.19989 1.63961 1.35258 1.20829 1.04452 1.65363 1.05343 1.43524 1.05771 1.22591 0.91168 0.98430 0.97568 1.22133 0.97246 0.97267 0.90042 1.62177 1.07593 1.49318 1.08064 1.22327 1.02047 0.93741 0.94111 1.22227 0.88557 0.98857 0.97506 1.22016 0.98336 0.96310 0.89069 0.93185 0.94161 0.93466 0.95688 0.95793 0.92924 0.83199 0.93702 0.89901 0.94057 0.90501 0.91511 0.91551 0.95743 0.94199 0.90468 0.90152 0.94137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.52 37.15 0.35 -2.06 16 2 C 0.10 2.07 2.87 -67.71 -0.19 1.88 16 3 H 0.04 1.01 8.01 -51.92 -0.42 0.60 16 4 C 0.02 0.41 4.54 -27.88 -0.13 0.28 16 5 C -0.52 -14.35 8.10 -34.44 -0.28 -14.63 16 6 H 0.05 1.36 7.58 -52.49 -0.40 0.96 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.52 -10.43 6.57 -4.67 -0.03 -10.46 16 14 N -0.39 -6.72 4.75 -113.64 -0.54 -7.26 16 15 C 0.03 0.52 5.58 -3.77 -0.02 0.50 16 16 C 0.06 0.84 5.62 -3.77 -0.02 0.82 16 17 N -0.55 -6.99 4.97 -242.75 -1.21 -8.20 16 18 C 0.03 0.26 9.60 60.07 0.58 0.84 16 19 C 0.06 0.73 5.62 -3.76 -0.02 0.71 16 20 C 0.07 1.08 6.07 -3.77 -0.02 1.06 16 21 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.35 7.52 6.64 -174.65 -1.16 6.36 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 34 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 304.20 15.07 4.58 4.58 Total: -1.00 -28.95 304.20 -9.20 -38.15 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.87 Total: 1.45 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 0.15 Total: -8.98 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -1.04 Total: -51.53 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.95 -9.20 -38.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695780589.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.691 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds