Wall clock time and date at job start Mon Mar 30 2020 03:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 14 14 N 1.45396 * 111.00449 * 270.00208 * 13 2 1 15 15 C 1.46953 * 111.00298 * 243.79932 * 14 13 2 16 16 C 1.53045 * 109.36704 * 176.80927 * 15 14 13 17 17 N 1.46959 * 109.36053 * 58.40539 * 16 15 14 18 18 C 1.46903 * 110.99756 * 176.81363 * 17 16 15 19 19 C 1.46959 * 110.88020 * 300.67641 * 17 16 15 20 20 C 1.46954 * 110.99699 * 119.99919 * 14 13 2 21 21 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 23 23 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 24 24 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 25 25 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 26 26 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 27 27 H 1.00907 * 110.99751 * 146.04948 * 13 2 1 28 28 H 1.09003 * 109.49079 * 296.78087 * 15 14 13 29 29 H 1.09000 * 109.48804 * 56.84130 * 15 14 13 30 30 H 1.09001 * 109.49313 * 298.43731 * 16 15 14 31 31 H 1.09000 * 109.50596 * 178.37767 * 16 15 14 32 32 H 1.09000 * 109.47146 * 183.79681 * 18 17 16 33 33 H 1.09000 * 109.47253 * 303.79157 * 18 17 16 34 34 H 1.08999 * 109.47276 * 63.79583 * 18 17 16 35 35 H 1.09003 * 109.49115 * 299.35568 * 19 17 16 36 36 H 1.09000 * 109.50700 * 179.30340 * 19 17 16 37 37 H 1.08997 * 109.49487 * 303.15638 * 20 14 13 38 38 H 1.09000 * 109.49297 * 63.22885 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2994 9 14 6.0922 -1.0621 -2.4360 10 1 6.7001 -2.2147 -1.7239 11 1 6.5298 -1.0702 -3.8551 12 1 6.5267 0.2031 -1.7914 13 7 2.0196 -0.6924 1.1995 14 7 2.1933 0.2375 2.3037 15 6 3.6053 0.3250 2.7015 16 6 3.7566 1.3699 3.8094 17 7 2.9128 0.9939 4.9523 18 6 3.0882 1.9335 6.0679 19 6 1.5008 0.9064 4.5546 20 6 1.3495 -0.1385 3.4465 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.6054 -0.2617 -2.1370 25 1 1.7517 -1.7715 -1.2055 26 1 4.0609 -2.2444 -4.0348 27 1 2.8769 -1.1883 1.0062 28 1 3.9405 -0.6452 3.0683 29 1 4.2079 0.6170 1.8415 30 1 3.4470 2.3454 3.4342 31 1 4.7985 1.4161 4.1263 32 1 2.5044 1.5945 6.9236 33 1 4.1421 1.9790 6.3422 34 1 2.7483 2.9240 5.7655 35 1 1.1655 1.8766 4.1878 36 1 0.8978 0.6146 5.4144 37 1 0.3075 -0.1844 3.1298 38 1 1.6591 -1.1139 3.8219 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695780589.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:48 Heat of formation + Delta-G solvation = 8.405546 kcal Electronic energy + Delta-G solvation = -16512.882498 eV Core-core repulsion = 14003.970534 eV Total energy + Delta-G solvation = -2508.911964 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.08604 -37.74817 -35.44058 -34.08484 -31.94146 -30.41869 -29.27320 -27.21454 -25.05454 -24.49432 -23.99854 -21.09891 -20.71868 -18.51916 -17.71872 -16.74334 -16.36791 -16.05873 -15.99193 -15.63608 -15.39217 -14.88118 -14.46808 -13.82924 -13.57130 -13.41991 -13.28879 -13.07817 -12.82676 -12.77024 -12.62285 -12.44187 -12.26732 -12.20506 -11.85750 -11.83651 -11.31859 -10.99783 -10.59587 -10.07640 -9.36010 -8.98570 -8.20842 -6.31563 1.38302 1.38561 1.49073 2.38544 2.43562 2.95804 3.12906 3.71109 4.05726 4.11298 4.22156 4.27298 4.41094 4.46340 4.57722 4.63328 4.67739 4.68248 4.79621 4.84656 4.90488 4.96949 5.02042 5.03547 5.15043 5.25161 5.34096 5.47734 5.55571 5.82031 5.90287 6.07477 6.09178 6.19957 6.30524 6.79561 6.83982 7.37297 8.90665 Molecular weight = 227.17amu Principal moments of inertia in cm(-1) A = 0.030162 B = 0.007048 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.092319 B = 3971.992272 C = 4745.696893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.109 3.891 3 H 0.031 0.969 4 C 0.024 3.976 5 C -0.534 4.534 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.266 1.266 13 N -0.522 5.522 14 N -0.390 5.390 15 C 0.033 3.967 16 C 0.070 3.930 17 N -0.558 5.558 18 C 0.027 3.973 19 C 0.064 3.936 20 C 0.072 3.928 21 H 0.048 0.952 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.000 1.000 25 H -0.002 1.002 26 H 0.263 0.737 27 H 0.334 0.666 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.028 0.972 35 H 0.038 0.962 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 6.713 16.719 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.002 4.002 3 H 0.049 0.951 4 C -0.014 4.014 5 C -0.572 4.572 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.191 1.191 13 N -0.244 5.244 14 N -0.206 5.206 15 C -0.096 4.096 16 C -0.059 4.059 17 N -0.283 5.283 18 C -0.121 4.121 19 C -0.065 4.065 20 C -0.057 4.057 21 H 0.067 0.933 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.018 0.982 25 H 0.017 0.983 26 H 0.072 0.928 27 H 0.153 0.847 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.353 6.419 16.755 18.096 hybrid contribution 1.782 0.201 -0.997 2.052 sum -0.571 6.620 15.758 17.101 Atomic orbital electron populations 1.21631 0.94294 1.01122 1.00783 1.21384 0.95054 0.95519 0.88198 0.95100 1.19214 0.94965 0.94784 0.92428 1.21475 0.93175 1.34175 1.08409 0.92790 1.25862 1.03246 0.94765 0.95284 1.70087 1.37518 1.36548 1.12659 0.85545 0.79924 0.78793 0.77375 1.19803 1.20866 1.19068 1.63986 1.34518 1.21319 1.04622 1.65367 1.06543 1.42687 1.05981 1.22581 0.90083 0.99075 0.97903 1.22047 0.98568 0.95737 0.89552 1.62190 1.07335 1.50523 1.08241 1.22397 1.03111 0.93268 0.93314 1.22201 0.89099 0.97791 0.97369 1.22105 0.97814 0.96916 0.88866 0.93323 0.92287 0.92872 0.98181 0.98329 0.92772 0.84704 0.94334 0.91744 0.94470 0.88766 0.90003 0.90579 0.95356 0.94364 0.87971 0.90006 0.94987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.42 9.52 71.98 0.69 -3.73 16 2 C 0.11 4.70 2.87 44.91 0.13 4.83 16 3 H 0.03 1.41 8.01 -2.38 -0.02 1.40 16 4 C 0.02 1.28 4.54 29.85 0.14 1.42 16 5 C -0.53 -29.77 8.10 25.60 0.21 -29.56 16 6 H 0.05 2.92 7.58 -2.91 -0.02 2.89 16 7 C 0.01 0.39 5.46 84.66 0.46 0.85 16 8 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 9 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 13 N -0.52 -21.05 6.57 -168.67 -1.11 -22.16 16 14 N -0.39 -13.37 4.75 -513.45 -2.44 -15.81 16 15 C 0.03 1.06 5.58 86.31 0.48 1.54 16 16 C 0.07 1.77 5.62 86.31 0.49 2.26 16 17 N -0.56 -12.77 4.97 -921.92 -4.58 -17.35 16 18 C 0.03 0.44 9.60 127.69 1.23 1.67 16 19 C 0.06 1.46 5.62 86.31 0.49 1.95 16 20 C 0.07 2.05 6.07 86.31 0.52 2.57 16 21 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 22 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 23 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 25 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 26 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 27 H 0.33 14.79 6.64 -204.84 -1.36 13.43 16 28 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 2.04 8.13 -2.39 -0.02 2.02 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.12 8.13 -2.39 -0.02 1.10 16 34 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -62.10 304.20 -1.36 -63.46 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -0.36 Total: 17.80 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 4.82 Total: -16.21 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -7.84 Total: -111.07 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -62.10 -1.36 -63.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695780589.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.861 kcal (2) G-P(sol) polarization free energy of solvation -62.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds