Wall clock time and date at job start Mon Mar 30 2020 03:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00130 * 2 1 4 4 C 1.53002 * 109.47362 * 179.97438 * 3 2 1 5 5 C 1.53781 * 113.61609 * 174.99888 * 4 3 2 6 6 C 1.53781 * 87.08070 * 139.98229 * 5 4 3 7 7 N 1.46900 * 113.61428 * 219.93557 * 6 5 4 8 8 C 1.46895 * 110.99924 * 203.46824 * 7 6 5 9 9 C 1.53005 * 109.47286 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47174 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46993 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99870 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00240 * 180.02562 * 11 10 9 14 14 N 1.31523 * 119.99838 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00392 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47125 * 59.99604 * 15 13 11 17 17 H 1.48499 * 109.47502 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47088 * 299.99915 * 15 13 11 19 19 C 1.53786 * 87.17350 * 334.52830 * 6 5 4 20 20 H 1.08996 * 109.47304 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46976 * 299.99770 * 1 2 3 22 22 H 1.08993 * 109.46970 * 59.99912 * 1 2 3 23 23 H 1.08997 * 109.47241 * 59.99827 * 3 2 1 24 24 H 1.09006 * 109.47242 * 300.00270 * 3 2 1 25 25 H 1.08996 * 112.84723 * 43.80708 * 4 3 2 26 26 H 1.08999 * 113.61181 * 25.43284 * 5 4 3 27 27 H 1.08998 * 113.61680 * 254.52836 * 5 4 3 28 28 H 1.09002 * 113.61445 * 89.11830 * 6 5 4 29 29 H 1.00902 * 110.99925 * 79.51829 * 7 6 5 30 30 H 1.08994 * 109.47448 * 300.00310 * 8 7 6 31 31 H 1.09001 * 109.47145 * 60.00387 * 8 7 6 32 32 H 1.09004 * 109.46904 * 300.00418 * 9 8 7 33 33 H 1.09001 * 109.46773 * 60.00085 * 9 8 7 34 34 H 1.08994 * 109.47185 * 300.00006 * 10 9 8 35 35 H 1.09001 * 109.47521 * 60.00152 * 10 9 8 36 36 H 0.97000 * 119.99719 * 179.97438 * 14 13 11 37 37 H 1.08992 * 113.61675 * 140.02412 * 19 6 5 38 38 H 1.09000 * 113.60973 * 270.92699 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.2605 2.5353 -0.1221 6 6 5.2672 1.9995 0.9095 7 7 5.6884 3.0026 1.8966 8 6 6.9930 2.6557 2.4758 9 6 7.3970 3.7208 3.4973 10 6 8.7561 3.3598 4.1001 11 6 9.1536 4.4085 5.1067 12 1 8.5022 5.2487 5.2971 13 6 10.3493 4.2960 5.7838 14 7 11.1428 3.2732 5.5516 15 14 10.8425 5.5963 7.0310 16 1 9.8239 5.6591 8.1097 17 1 12.1616 5.2460 7.6162 18 1 10.9337 6.9174 6.3590 19 6 4.1454 1.0748 1.4110 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.6886 1.8464 0.8899 24 1 1.6886 1.8464 -0.8900 25 1 3.9004 0.4285 -0.6944 26 1 3.6737 3.3801 0.2384 27 1 4.6951 2.7097 -1.1064 28 1 6.1066 1.4656 0.4640 29 1 4.9913 3.1156 2.6173 30 1 6.9252 1.6864 2.9696 31 1 7.7410 2.6087 1.6843 32 1 7.4647 4.6903 3.0038 33 1 6.6489 3.7673 4.2887 34 1 8.6888 2.3903 4.5935 35 1 9.5040 3.3135 3.3085 36 1 11.9843 3.1942 6.0277 37 1 4.4870 0.0711 1.6636 38 1 3.5272 1.5212 2.1899 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713956295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:11 Heat of formation + Delta-G solvation = -48.602658 kcal Electronic energy + Delta-G solvation = -15203.776991 eV Core-core repulsion = 12660.100215 eV Total energy + Delta-G solvation = -2543.676776 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.59175 -37.62396 -35.19859 -33.01888 -30.82218 -28.61478 -26.42205 -25.71624 -25.48255 -22.68532 -21.45206 -20.32193 -19.36648 -16.66058 -16.30042 -16.16722 -15.74940 -15.44631 -14.73311 -14.50535 -14.09356 -13.63948 -13.10515 -12.50733 -12.48224 -12.28419 -12.11015 -11.72061 -11.58329 -11.32335 -10.96986 -10.81668 -10.62104 -10.54698 -10.48840 -10.31592 -9.86301 -9.65676 -9.27497 -9.01869 -8.31038 -8.05874 -5.96395 -3.98512 3.35899 3.39846 3.42675 3.48648 4.40569 4.45939 4.51314 4.54803 4.83881 4.97924 4.99160 5.03467 5.20794 5.26785 5.32608 5.38482 5.39189 5.64033 5.68890 5.76689 5.83150 5.91302 6.02233 6.13019 6.29541 6.36738 6.76679 6.83161 6.91492 7.17625 7.41734 7.68049 7.72267 7.87796 8.04293 8.47545 9.08606 9.65246 11.15082 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.072464 B = 0.003335 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.303818 B = 8393.294907 C = 8440.396982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.073 3.927 4 C -0.110 4.110 5 C -0.120 4.120 6 C 0.068 3.932 7 N -0.681 5.681 8 C 0.058 3.942 9 C -0.108 4.108 10 C 0.022 3.978 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.161 4.161 20 H 0.084 0.916 21 H 0.040 0.960 22 H 0.039 0.961 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.339 0.661 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.013 0.987 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.067 0.933 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.622 -4.845 -11.526 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.311 6.311 3 C -0.004 4.004 4 C -0.129 4.129 5 C -0.158 4.158 6 C -0.043 4.043 7 N -0.310 5.310 8 C -0.070 4.070 9 C -0.146 4.146 10 C -0.016 4.016 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.200 4.200 20 H 0.102 0.898 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.115 0.885 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.157 0.843 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.046 -4.649 -11.931 22.127 hybrid contribution -0.151 0.110 1.304 1.318 sum -18.196 -4.539 -10.627 21.555 Atomic orbital electron populations 1.22725 0.81337 1.02632 0.99869 1.87897 1.19429 1.28357 1.95384 1.22578 0.93446 0.84377 0.99998 1.22459 0.92398 0.99360 0.98686 1.23078 0.97211 0.95816 0.99703 1.22960 0.95372 0.91653 0.94360 1.60494 1.05455 1.46205 1.18827 1.22157 0.89572 0.97722 0.97569 1.21631 0.99732 0.97316 0.95885 1.19060 0.90375 0.96704 0.95418 1.21231 1.03967 1.08434 1.22120 0.92736 1.25034 0.96594 0.95728 0.97194 1.69963 1.11532 1.29655 1.42520 0.86651 0.77620 0.82067 0.81615 1.20284 1.21319 1.20221 1.23803 0.98738 1.01094 0.96370 0.89756 0.94147 0.94216 0.93193 0.93327 0.88506 0.89639 0.91168 0.88625 0.84297 0.95704 0.91516 0.92607 0.93724 0.96820 0.96586 0.92993 0.91442 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.22 10.70 -35.23 -0.38 -4.60 16 3 C 0.07 0.69 5.78 37.16 0.21 0.90 16 4 C -0.11 -1.11 4.02 -89.67 -0.36 -1.47 16 5 C -0.12 -1.24 7.44 -25.92 -0.19 -1.44 16 6 C 0.07 0.84 4.16 -66.90 -0.28 0.56 16 7 N -0.68 -10.06 6.61 -105.87 -0.70 -10.76 16 8 C 0.06 1.03 5.54 -3.82 -0.02 1.01 16 9 C -0.11 -2.28 5.41 -26.73 -0.14 -2.43 16 10 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 11 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 12 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 15 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C -0.16 -1.80 7.27 -25.77 -0.19 -1.99 16 20 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 22 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.05 0.45 7.85 -51.93 -0.41 0.04 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.10 1.21 7.88 -51.93 -0.41 0.80 16 29 H 0.34 4.71 8.21 -39.29 -0.32 4.39 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.89 7.59 -51.93 -0.39 0.50 16 LS Contribution 313.14 15.07 4.72 4.72 Total: -1.00 -30.94 313.14 -8.04 -38.98 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.99 Total: -1.69 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -0.41 Total: -16.91 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.04 Total: -37.49 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.38 Total: -4.60 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.94 -8.04 -38.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713956295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.622 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds