Wall clock time and date at job start Mon Mar 30 2020 02:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47080 * 2 1 4 4 C 1.46901 * 110.99857 * 75.74585 * 3 2 1 5 5 H 1.09003 * 109.47101 * 320.81275 * 4 3 2 6 6 C 1.52995 * 109.47377 * 80.81420 * 4 3 2 7 7 C 1.53004 * 109.47166 * 200.81478 * 4 3 2 8 8 C 1.50701 * 109.46858 * 61.43928 * 7 4 3 9 9 H 1.07996 * 120.00506 * 355.16313 * 8 7 4 10 10 C 1.37878 * 119.99859 * 175.16419 * 8 7 4 11 11 N 1.31513 * 120.00059 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00109 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46725 * 90.00060 * 12 10 8 14 14 H 1.48500 * 109.47346 * 210.00009 * 12 10 8 15 15 H 1.48494 * 109.47248 * 330.00172 * 12 10 8 16 16 C 1.46896 * 111.00401 * 199.69725 * 3 2 1 17 17 H 1.08996 * 110.75318 * 287.91302 * 16 3 2 18 18 C 1.55314 * 110.84502 * 51.60482 * 16 3 2 19 19 C 1.54944 * 100.93861 * 152.32337 * 18 16 3 20 20 O 1.43641 * 105.13950 * 323.55334 * 19 18 16 21 21 C 1.43241 * 109.97051 * 24.43217 * 20 19 18 22 22 H 1.08998 * 109.47477 * 304.23580 * 1 2 3 23 23 H 1.09000 * 109.47204 * 64.23570 * 1 2 3 24 24 H 1.08998 * 109.46657 * 184.23271 * 1 2 3 25 25 H 1.09001 * 109.47817 * 240.00519 * 2 1 3 26 26 H 1.08995 * 109.47425 * 119.99840 * 2 1 3 27 27 H 1.09000 * 109.47202 * 67.33024 * 6 4 3 28 28 H 1.08998 * 109.47364 * 187.33277 * 6 4 3 29 29 H 1.08999 * 109.47324 * 307.33418 * 6 4 3 30 30 H 1.08996 * 109.47089 * 181.43624 * 7 4 3 31 31 H 1.08998 * 109.46766 * 301.43753 * 7 4 3 32 32 H 0.97002 * 120.00714 * 180.02562 * 11 10 8 33 33 H 1.09003 * 111.12205 * 270.23972 * 18 16 3 34 34 H 1.08998 * 111.12415 * 34.40820 * 18 16 3 35 35 H 1.09003 * 110.30794 * 204.63631 * 19 18 16 36 36 H 1.09002 * 110.39800 * 82.51637 * 19 18 16 37 37 H 1.09000 * 109.82592 * 238.77599 * 21 20 19 38 38 H 1.08999 * 109.82885 * 117.80108 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8767 1.9939 1.3292 5 1 0.9339 1.6766 1.7748 6 6 3.0375 1.5494 2.2213 7 6 1.8905 3.5181 1.1962 8 6 0.7264 3.9586 0.3465 9 1 0.0908 3.2221 -0.1224 10 6 0.4729 5.3020 0.1677 11 7 1.2466 6.1990 0.7390 12 14 -0.9695 5.8482 -0.8861 13 1 -2.1791 5.9871 -0.0358 14 1 -0.6550 7.1553 -1.5168 15 1 -1.2213 4.8363 -1.9434 16 6 3.4124 1.4511 -0.4622 17 1 4.0890 1.0483 0.2915 18 6 3.5812 0.7089 -1.8161 19 6 4.7809 1.4773 -2.4251 20 8 4.5945 2.8436 -2.0227 21 6 3.8006 2.8988 -0.8317 22 1 -0.3634 0.5781 0.8496 23 1 -0.3633 0.4467 -0.9255 24 1 -0.3632 -1.0249 0.0758 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.9677 1.9765 1.8469 28 1 2.8643 1.8932 3.2411 29 1 3.1073 0.4617 2.2116 30 1 1.8101 3.9698 2.1849 31 1 2.8225 3.8334 0.7273 32 1 1.0681 7.1441 0.6136 33 1 3.8260 -0.3418 -1.6601 34 1 2.6910 0.8152 -2.4360 35 1 4.7685 1.3980 -3.5121 36 1 5.7201 1.0910 -2.0290 37 1 2.9017 3.4878 -1.0136 38 1 4.3788 3.3447 -0.0223 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:07 Heat of formation + Delta-G solvation = -58.803739 kcal Electronic energy + Delta-G solvation = -17290.058913 eV Core-core repulsion = 14745.939785 eV Total energy + Delta-G solvation = -2544.119128 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.96905 -38.47638 -35.14961 -33.28973 -32.53719 -30.19608 -29.45842 -28.25852 -25.34451 -23.64661 -22.74126 -22.27266 -20.03469 -18.36309 -17.61626 -17.28763 -16.57293 -16.12838 -15.83799 -15.59940 -14.86424 -14.54782 -14.25756 -14.14464 -13.50567 -13.36364 -13.25293 -13.01689 -12.67591 -12.59697 -12.43021 -12.27493 -12.20773 -11.98497 -11.85595 -11.60544 -11.26083 -11.03381 -10.98123 -10.40743 -10.36667 -8.90545 -8.05323 -6.07640 1.40976 1.42895 1.53089 2.49531 2.87810 3.23621 3.31017 3.56942 4.04620 4.07105 4.21172 4.31935 4.38545 4.41266 4.45123 4.47743 4.62086 4.78479 4.82314 4.87037 4.87833 4.96413 5.08276 5.10910 5.18721 5.23856 5.28274 5.34648 5.51608 5.58338 5.78794 5.95427 6.15485 6.36664 6.51885 6.57305 7.06833 7.57096 9.06598 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021406 B = 0.010465 C = 0.009183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.704890 B = 2674.948502 C = 3048.536051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 N -0.522 5.522 4 C 0.091 3.909 5 H 0.066 0.934 6 C -0.173 4.173 7 C 0.021 3.979 8 C -0.486 4.486 9 H 0.059 0.941 10 C -0.005 4.005 11 N -0.939 5.939 12 Si 0.947 3.053 13 H -0.277 1.277 14 H -0.291 1.291 15 H -0.268 1.268 16 C 0.057 3.943 17 H 0.068 0.932 18 C -0.140 4.140 19 C 0.045 3.955 20 O -0.417 6.417 21 C 0.062 3.938 22 H 0.039 0.961 23 H 0.045 0.955 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.067 0.933 30 H -0.014 1.014 31 H 0.017 0.983 32 H 0.256 0.744 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.062 -15.163 -2.753 15.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.080 4.080 3 N -0.247 5.247 4 C -0.017 4.017 5 H 0.084 0.916 6 C -0.232 4.232 7 C -0.016 4.016 8 C -0.525 4.525 9 H 0.077 0.923 10 C -0.201 4.201 11 N -0.582 5.582 12 Si 0.774 3.226 13 H -0.203 1.203 14 H -0.217 1.217 15 H -0.193 1.193 16 C -0.052 4.052 17 H 0.086 0.914 18 C -0.177 4.177 19 C -0.031 4.031 20 O -0.337 6.337 21 C -0.014 4.014 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.096 0.904 25 H 0.107 0.893 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.005 0.995 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.862 -14.552 -3.182 15.389 hybrid contribution -0.358 0.556 0.457 0.804 sum 3.503 -13.997 -2.725 14.684 Atomic orbital electron populations 1.21728 0.95255 1.01435 1.01431 1.22206 0.96145 0.88210 1.01390 1.62082 1.18246 1.18088 1.26322 1.21676 0.97097 0.95782 0.87171 0.91582 1.22372 0.99307 1.01096 1.00379 1.19378 0.96895 0.90634 0.94733 1.21438 1.12025 0.90994 1.28001 0.92256 1.25783 0.99073 0.97481 0.97721 1.70085 1.40529 1.00904 1.46693 0.85708 0.80176 0.77340 0.79366 1.20292 1.21705 1.19259 1.23131 0.90448 0.94412 0.97212 0.91430 1.23340 0.98994 1.00571 0.94811 1.23547 0.97879 0.80847 1.00874 1.88384 1.73078 1.27951 1.44242 1.23383 0.94293 0.98034 0.85737 0.94222 0.93584 0.90421 0.89308 0.94169 0.93150 0.92434 0.91381 0.99524 0.96491 0.93550 0.87148 0.90374 0.88468 0.90775 0.91319 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 10.06 71.98 0.72 -3.15 16 2 C 0.05 1.28 5.46 86.30 0.47 1.75 16 3 N -0.52 -18.38 3.76 -838.60 -3.15 -21.53 16 4 C 0.09 3.57 2.13 44.91 0.10 3.66 16 5 H 0.07 2.65 6.44 -2.39 -0.02 2.63 16 6 C -0.17 -5.57 7.94 71.98 0.57 -5.00 16 7 C 0.02 1.06 3.95 29.85 0.12 1.18 16 8 C -0.49 -27.24 8.03 25.60 0.21 -27.04 16 9 H 0.06 3.29 7.64 -2.91 -0.02 3.27 16 10 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 11 N -0.94 -58.22 13.29 21.45 0.28 -57.93 16 12 Si 0.95 46.21 29.54 68.60 2.03 48.23 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 15 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 16 C 0.06 1.84 2.07 46.18 0.10 1.93 16 17 H 0.07 2.00 5.92 -2.39 -0.01 1.99 16 18 C -0.14 -3.52 5.05 32.05 0.16 -3.36 16 19 C 0.04 1.18 7.78 72.65 0.56 1.74 16 20 O -0.42 -16.01 11.36 -148.98 -1.69 -17.70 16 21 C 0.06 2.54 5.44 72.45 0.39 2.94 16 22 H 0.04 1.24 6.68 -2.39 -0.02 1.22 16 23 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.09 2.01 5.99 -2.39 -0.01 1.99 16 26 H 0.04 0.98 6.82 -2.39 -0.02 0.97 16 27 H 0.05 1.66 6.46 -2.39 -0.02 1.64 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 29 H 0.07 1.81 6.94 -2.39 -0.02 1.79 16 30 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 31 H 0.02 0.92 4.23 -2.39 -0.01 0.91 16 32 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.11 1.97 7.80 -2.39 -0.02 1.96 16 34 H 0.08 2.15 8.04 -2.39 -0.02 2.13 16 35 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 3.50 5.99 -2.39 -0.01 3.48 16 38 H 0.05 1.97 7.11 -2.39 -0.02 1.95 16 Total: -1.00 -66.13 285.86 2.36 -63.78 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.02 Total: 10.31 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 3.86 Total: -25.16 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -2.87 Total: -79.46 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.69 Total: -17.70 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -66.13 2.36 -63.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.972 kcal (2) G-P(sol) polarization free energy of solvation -66.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds