Wall clock time and date at job start Mon Mar 30 2020 03:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46688 * 2 1 4 4 C 1.50692 * 109.47132 * 240.00005 * 2 1 3 5 5 H 1.08001 * 120.00390 * 275.02031 * 4 2 1 6 6 C 1.37883 * 120.00345 * 95.01958 * 4 2 1 7 7 N 1.31509 * 120.00305 * 184.91756 * 6 4 2 8 8 Si 1.86802 * 119.99584 * 4.91229 * 6 4 2 9 9 H 1.48501 * 109.46911 * 84.83640 * 8 6 4 10 10 H 1.48496 * 109.47402 * 204.83299 * 8 6 4 11 11 H 1.48501 * 109.47292 * 324.83662 * 8 6 4 12 12 C 1.50700 * 109.47111 * 119.99892 * 2 1 3 13 13 C 1.38266 * 119.97049 * 59.98122 * 12 2 1 14 14 C 1.38189 * 120.04828 * 180.02562 * 13 12 2 15 15 C 1.38438 * 119.99068 * 359.97438 * 14 13 12 16 16 F 1.35098 * 120.03393 * 180.02562 * 15 14 13 17 17 C 1.38554 * 119.93995 * 359.74932 * 15 14 13 18 18 Cl 1.73595 * 120.03126 * 180.27347 * 17 15 14 19 19 C 1.38213 * 119.96566 * 240.00360 * 12 2 1 20 20 H 1.09006 * 109.47208 * 174.98005 * 1 2 3 21 21 H 1.09002 * 109.47662 * 294.98006 * 1 2 3 22 22 H 1.08996 * 109.47594 * 54.98365 * 1 2 3 23 23 H 0.96996 * 119.99977 * 180.02562 * 7 6 4 24 24 H 1.08001 * 119.97122 * 359.97438 * 13 12 2 25 25 H 1.08002 * 120.00769 * 179.97438 * 14 13 12 26 26 H 1.07993 * 119.99846 * 359.97438 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1351 -1.7855 -1.2291 6 6 2.3606 0.0121 -2.3579 7 7 2.7063 -0.6131 -3.4621 8 14 2.3143 1.8791 -2.3171 9 1 3.5999 2.3945 -1.7816 10 1 2.1069 2.3994 -3.6924 11 1 1.1994 2.3277 -1.4448 12 6 2.0323 -0.7104 1.2305 13 6 1.6976 -2.0340 1.4489 14 6 2.1569 -2.6868 2.5769 15 6 2.9532 -2.0155 3.4889 16 9 3.4031 -2.6530 4.5918 17 6 3.2931 -0.6908 3.2667 18 17 4.2973 0.1512 4.4052 19 6 2.8268 -0.0380 2.1398 20 1 -0.3634 -1.0238 -0.0899 21 1 -0.3634 0.4340 0.9315 22 1 -0.3634 0.5896 -0.8416 23 1 2.9376 -0.1048 -4.2551 24 1 1.0760 -2.5578 0.7377 25 1 1.8947 -3.7206 2.7471 26 1 3.0876 0.9958 1.9681 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083983602.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:14 Heat of formation + Delta-G solvation = -57.121671 kcal Electronic energy + Delta-G solvation = -13293.066418 eV Core-core repulsion = 10696.884238 eV Total energy + Delta-G solvation = -2596.182180 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 228.041 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.92636 -40.32827 -37.66887 -35.99533 -33.67213 -31.93201 -29.96337 -27.17597 -24.33275 -24.03571 -21.40988 -19.06892 -18.74187 -17.40207 -17.06524 -16.72963 -16.02871 -15.49940 -14.90702 -14.52710 -14.50444 -14.14085 -13.89348 -13.65409 -13.17931 -12.84969 -12.58815 -12.35087 -12.14199 -12.02111 -11.76256 -11.46820 -11.10533 -10.67993 -9.91973 -9.40504 -8.26111 -6.29835 0.05670 0.18893 0.97530 1.38541 1.40478 1.49378 2.37257 2.55442 3.10958 3.13558 3.70692 3.94637 4.25511 4.31573 4.42820 4.75431 4.82688 4.90405 5.01800 5.09743 5.17412 5.26705 5.56099 5.62662 5.76904 5.84271 6.32855 6.76735 7.34985 8.89911 Molecular weight = 228.04amu Principal moments of inertia in cm(-1) A = 0.034229 B = 0.008144 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.822411 B = 3437.123523 C = 3801.645216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.038 3.962 3 H 0.043 0.957 4 C -0.505 4.505 5 H 0.044 0.956 6 C 0.015 3.985 7 N -0.947 5.947 8 Si 0.930 3.070 9 H -0.269 1.269 10 H -0.292 1.292 11 H -0.238 1.238 12 C -0.044 4.044 13 C -0.083 4.083 14 C -0.131 4.131 15 C 0.075 3.925 16 F -0.136 7.136 17 C -0.074 4.074 18 Cl -0.056 7.056 19 C -0.101 4.101 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.041 0.959 23 H 0.265 0.735 24 H 0.140 0.860 25 H 0.167 0.833 26 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 1.106 13.408 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.019 3.981 3 H 0.061 0.939 4 C -0.543 4.543 5 H 0.062 0.938 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.755 3.245 9 H -0.194 1.194 10 H -0.218 1.218 11 H -0.161 1.161 12 C -0.045 4.045 13 C -0.101 4.101 14 C -0.150 4.150 15 C 0.055 3.945 16 F -0.114 7.114 17 C -0.101 4.101 18 Cl -0.027 7.027 19 C -0.120 4.120 20 H 0.071 0.929 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.157 0.843 25 H 0.184 0.816 26 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.513 1.182 13.379 13.516 hybrid contribution 0.503 0.573 -0.329 0.830 sum -1.011 1.754 13.050 13.206 Atomic orbital electron populations 1.21915 0.95700 1.01338 1.00002 1.18308 0.94416 0.95424 0.89954 0.93853 1.21166 1.42983 0.94257 0.95926 0.93806 1.25853 0.94397 1.03119 0.94863 1.70030 1.48156 1.37861 1.02662 0.85982 0.80214 0.80719 0.77613 1.19403 1.21803 1.16124 1.20351 0.94752 0.94832 0.94560 1.21116 0.98974 0.93929 0.96097 1.21309 0.98234 1.01894 0.93548 1.17425 1.00799 0.89761 0.86476 1.91482 1.87705 1.81536 1.50727 1.20986 1.01393 0.92418 0.95305 1.98346 1.67470 1.77393 1.59532 1.20998 0.97883 1.01178 0.91928 0.92878 0.92730 0.93982 0.92603 0.84259 0.81573 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.91 71.98 0.64 -4.17 15 2 C 0.04 1.58 2.14 -12.29 -0.03 1.55 15 3 H 0.04 1.78 5.02 -2.39 -0.01 1.77 15 4 C -0.51 -26.34 8.64 25.60 0.22 -26.12 15 5 H 0.04 2.52 7.64 -2.91 -0.02 2.50 15 6 C 0.02 0.82 5.47 84.66 0.46 1.28 15 7 N -0.95 -56.70 13.96 21.45 0.30 -56.40 15 8 Si 0.93 41.39 26.99 68.60 1.85 43.24 15 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 15 10 H -0.29 -13.08 7.11 99.48 0.71 -12.37 15 11 H -0.24 -9.54 6.82 99.48 0.68 -8.86 15 12 C -0.04 -1.63 4.77 -19.86 -0.09 -1.72 15 13 C -0.08 -2.76 8.65 22.26 0.19 -2.57 15 14 C -0.13 -3.77 10.02 22.31 0.22 -3.55 15 15 C 0.08 2.30 7.28 22.39 0.16 2.47 15 16 F -0.14 -4.04 16.84 44.97 0.76 -3.28 15 17 C -0.07 -2.32 6.33 22.37 0.14 -2.18 15 18 Cl -0.06 -1.58 28.62 -2.72 -0.08 -1.66 15 19 C -0.10 -3.39 9.45 22.29 0.21 -3.18 15 20 H 0.05 1.87 7.57 -2.38 -0.02 1.86 15 21 H 0.05 1.68 8.14 -2.39 -0.02 1.66 15 22 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 23 H 0.26 14.98 8.31 -92.71 -0.77 14.21 15 24 H 0.14 4.57 7.55 -2.91 -0.02 4.54 15 25 H 0.17 3.71 8.06 -2.91 -0.02 3.68 15 26 H 0.14 4.46 7.94 -2.91 -0.02 4.44 15 Total: -1.00 -58.36 247.47 6.13 -52.23 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: 1.16 Total: 4.05 kcal Atomic # 6 Polarization: -40.32 SS G_CDS: 2.14 Total: -38.18 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.30 Total: -56.40 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.76 Total: -3.28 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.85 Total: 43.24 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -58.36 6.13 -52.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083983602.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.889 kcal (2) G-P(sol) polarization free energy of solvation -58.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds