Wall clock time and date at job start Mon Mar 30 2020 03:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99636 * 2 1 4 4 H 1.48495 * 109.46964 * 269.99795 * 3 2 1 5 5 H 1.48499 * 109.46909 * 29.99855 * 3 2 1 6 6 H 1.48497 * 109.47155 * 149.99677 * 3 2 1 7 7 C 1.37875 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99907 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47120 * 299.99553 * 9 7 2 11 11 C 1.50699 * 109.46956 * 179.97438 * 9 7 2 12 12 C 1.38174 * 120.02935 * 299.72384 * 11 9 7 13 13 C 1.38237 * 120.05503 * 179.75129 * 12 11 9 14 14 C 1.38286 * 120.11443 * 0.54330 * 13 12 11 15 15 C 1.38128 * 120.05478 * 359.70897 * 14 13 12 16 16 C 1.38716 * 120.03112 * 119.99582 * 11 9 7 17 17 O 1.35903 * 120.05033 * 359.95932 * 16 11 9 18 18 C 1.52997 * 109.47466 * 59.99800 * 9 7 2 19 19 F 1.39905 * 109.47157 * 59.99756 * 18 9 7 20 20 F 1.39900 * 109.47010 * 300.00147 * 18 9 7 21 21 H 0.96997 * 120.00148 * 0.02562 * 1 2 3 22 22 H 1.08002 * 119.96675 * 0.02562 * 12 11 9 23 23 H 1.08005 * 119.94347 * 180.25581 * 13 12 11 24 24 H 1.08008 * 119.97410 * 179.73026 * 14 13 12 25 25 H 1.07998 * 120.02699 * 180.02562 * 15 14 13 26 26 H 0.96697 * 114.00162 * 90.00176 * 17 16 11 27 27 H 1.09004 * 109.47261 * 179.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 6 2.2305 -3.6445 0.0005 12 6 3.1307 -3.7846 -1.0383 13 6 4.0327 -4.8321 -1.0363 14 6 4.0292 -5.7487 -0.0008 15 6 3.1279 -5.6160 1.0374 16 6 2.2253 -4.5623 1.0406 17 8 1.3378 -4.4293 2.0612 18 6 0.3720 -2.5805 -1.2490 19 9 1.1766 -2.5066 -2.3910 20 9 -0.5372 -1.5172 -1.2495 21 1 -0.4850 0.8400 -0.0004 22 1 3.1324 -3.0725 -1.8504 23 1 4.7383 -4.9375 -1.8472 24 1 4.7321 -6.5687 -0.0037 25 1 3.1259 -6.3319 1.8461 26 1 0.4990 -4.8877 1.9152 27 1 -0.1727 -3.5247 -1.2492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260062749.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:05 Heat of formation + Delta-G solvation = -123.053905 kcal Electronic energy + Delta-G solvation = -16146.412594 eV Core-core repulsion = 13119.035003 eV Total energy + Delta-G solvation = -3027.377591 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.070 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.16117 -47.09522 -40.62866 -37.42807 -35.72553 -33.30736 -30.74991 -29.31271 -26.71221 -24.16362 -23.27291 -21.74557 -19.14405 -18.63500 -17.83840 -17.52426 -16.89476 -16.57775 -16.38710 -16.11646 -15.39828 -14.72473 -14.57705 -13.97492 -13.76132 -13.46763 -13.20497 -12.98295 -12.88630 -12.71739 -12.49283 -12.42748 -11.96291 -11.78910 -11.04800 -10.90097 -10.48890 -9.60519 -9.31024 -8.02882 -6.22090 0.46303 0.56091 1.38839 1.39740 1.49825 2.40407 2.87242 3.13214 3.47282 3.48444 3.97691 4.16532 4.23829 4.32823 4.46388 4.62797 4.78935 4.85736 5.12156 5.27046 5.37200 5.57670 5.69107 5.72630 5.92683 6.07263 6.19929 6.73074 6.97846 7.40070 8.88115 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.029283 B = 0.010433 C = 0.010057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.946956 B = 2683.174356 C = 2783.488937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.048 0.952 9 C 0.037 3.963 10 H 0.044 0.956 11 C -0.104 4.104 12 C -0.111 4.111 13 C -0.134 4.134 14 C -0.111 4.111 15 C -0.150 4.150 16 C 0.086 3.914 17 O -0.508 6.508 18 C 0.260 3.740 19 F -0.226 7.226 20 F -0.180 7.180 21 H 0.257 0.743 22 H 0.116 0.884 23 H 0.146 0.854 24 H 0.159 0.841 25 H 0.148 0.852 26 H 0.400 0.600 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.749 -11.123 -0.766 11.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.067 0.933 9 C 0.018 3.982 10 H 0.062 0.938 11 C -0.105 4.105 12 C -0.129 4.129 13 C -0.151 4.151 14 C -0.129 4.129 15 C -0.168 4.168 16 C 0.041 3.959 17 O -0.320 6.320 18 C 0.206 3.794 19 F -0.208 7.208 20 F -0.161 7.161 21 H 0.066 0.934 22 H 0.134 0.866 23 H 0.164 0.836 24 H 0.177 0.823 25 H 0.166 0.834 26 H 0.258 0.742 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.000 -10.630 -0.524 11.369 hybrid contribution -0.341 1.060 -0.269 1.145 sum 3.659 -9.570 -0.793 10.276 Atomic orbital electron populations 1.70612 1.06532 1.26456 1.47165 1.25774 0.95907 1.02448 0.94735 0.85603 0.78711 0.79494 0.78157 1.20269 1.20421 1.19576 1.20982 0.92623 0.90295 1.53758 0.93336 1.18611 0.93393 0.92798 0.93363 0.93772 1.20438 0.99094 0.96057 0.94865 1.21280 0.94999 0.98474 0.98144 1.21457 0.98891 0.94668 1.00124 1.21330 0.98721 0.99733 0.93067 1.21578 0.97207 0.97625 1.00384 1.18573 0.94416 0.94968 0.87914 1.84792 1.29361 1.77420 1.40409 1.22525 0.84167 0.88156 0.84569 1.92766 1.75932 1.97317 1.54758 1.93151 1.67726 1.58897 1.96308 0.93354 0.86601 0.83643 0.82300 0.83418 0.74235 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.12 9.50 21.45 0.20 -50.91 15 2 C 0.01 0.81 5.20 84.65 0.44 1.25 15 3 Si 0.95 45.41 29.54 68.60 2.03 47.44 15 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 15 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 15 6 H -0.27 -12.64 7.11 99.48 0.71 -11.93 15 7 C -0.54 -30.56 7.98 25.60 0.20 -30.36 15 8 H 0.05 2.80 7.61 -2.91 -0.02 2.77 15 9 C 0.04 1.88 2.32 -12.29 -0.03 1.85 15 10 H 0.04 2.38 6.99 -2.39 -0.02 2.37 15 11 C -0.10 -4.43 4.75 -19.77 -0.09 -4.52 15 12 C -0.11 -4.33 8.38 22.25 0.19 -4.15 15 13 C -0.13 -3.99 10.04 22.28 0.22 -3.77 15 14 C -0.11 -2.86 10.04 22.25 0.22 -2.64 15 15 C -0.15 -4.33 9.99 22.37 0.22 -4.11 15 16 C 0.09 3.15 6.68 22.51 0.15 3.30 15 17 O -0.51 -17.98 12.27 -92.45 -1.13 -19.11 15 18 C 0.26 12.52 4.83 71.98 0.35 12.87 15 19 F -0.23 -10.94 14.43 44.97 0.65 -10.29 15 20 F -0.18 -9.90 12.93 44.97 0.58 -9.31 15 21 H 0.26 14.43 8.31 -92.71 -0.77 13.66 15 22 H 0.12 4.93 6.36 -2.91 -0.02 4.91 15 23 H 0.15 3.41 8.06 -2.91 -0.02 3.39 15 24 H 0.16 2.77 8.06 -2.91 -0.02 2.75 15 25 H 0.15 3.38 8.06 -2.91 -0.02 3.35 15 26 H 0.40 9.99 9.06 -74.06 -0.67 9.32 15 27 H 0.09 3.54 8.14 -2.38 -0.02 3.52 15 Total: -1.00 -67.47 240.87 4.74 -62.74 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.53 Total: 9.74 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 1.88 Total: -30.28 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.20 Total: -50.91 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -1.13 Total: -19.11 kcal Atomic # 9 Polarization: -20.84 SS G_CDS: 1.23 Total: -19.61 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -67.47 4.74 -62.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062749.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.318 kcal (2) G-P(sol) polarization free energy of solvation -67.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds