Wall clock time and date at job start Mon Mar 30 2020 02:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00202 * 2 1 4 4 H 1.48495 * 109.46967 * 269.99993 * 3 2 1 5 5 H 1.48504 * 109.46953 * 29.99821 * 3 2 1 6 6 H 1.48497 * 109.47317 * 149.99790 * 3 2 1 7 7 C 1.37882 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99660 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00115 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.47330 * 59.99680 * 9 7 2 11 11 C 1.53005 * 109.47088 * 299.99847 * 9 7 2 12 12 F 1.39894 * 109.47202 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.47092 * 180.02562 * 9 7 2 14 14 C 1.38245 * 119.98447 * 239.99965 * 13 9 7 15 15 C 1.38217 * 120.01048 * 179.97438 * 14 13 9 16 16 C 1.38351 * 119.98541 * 0.30201 * 15 14 13 17 17 Cl 1.73604 * 120.00786 * 179.69323 * 16 15 14 18 18 C 1.38348 * 119.97455 * 359.46866 * 16 15 14 19 19 C 1.38212 * 119.98634 * 0.50208 * 18 16 15 20 20 H 0.96999 * 119.99771 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.46940 * 300.00155 * 11 9 7 22 22 H 1.08998 * 109.47319 * 59.99848 * 11 9 7 23 23 H 1.07999 * 119.99366 * 0.02562 * 14 13 9 24 24 H 1.08002 * 120.00169 * 180.02562 * 15 14 13 25 25 H 1.08007 * 120.00586 * 180.25470 * 18 16 15 26 26 H 1.08001 * 119.99231 * 179.76911 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8896 11 6 0.3709 -2.5800 1.2495 12 9 -0.3282 -3.7917 1.2498 13 6 2.2303 -3.6446 0.0018 14 6 2.2250 -4.5593 -1.0348 15 6 3.1232 -5.6098 -1.0344 16 6 4.0236 -5.7493 0.0067 17 17 5.1468 -7.0730 0.0117 18 6 4.0316 -4.8309 1.0414 19 6 3.1333 -3.7805 1.0396 20 1 -0.4850 0.8401 -0.0004 21 1 0.9973 -2.5220 2.1398 22 1 -0.3374 -1.7515 1.2491 23 1 1.5193 -4.4525 -1.8454 24 1 3.1192 -6.3240 -1.8445 25 1 4.7370 -4.9370 1.8523 26 1 3.1369 -3.0657 1.8492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260198321.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:06 Heat of formation + Delta-G solvation = -53.050728 kcal Electronic energy + Delta-G solvation = -13342.864556 eV Core-core repulsion = 10746.858905 eV Total energy + Delta-G solvation = -2596.005650 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 228.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.36223 -38.81468 -36.21282 -34.18181 -31.42880 -30.53694 -27.90341 -24.89198 -22.76682 -22.12254 -19.87663 -16.71233 -16.59146 -15.33034 -14.96632 -14.43503 -14.27265 -14.12049 -13.52978 -13.00054 -12.94339 -12.72356 -12.08338 -11.53301 -11.20604 -11.08268 -10.96517 -10.69291 -10.45899 -10.18822 -9.75955 -9.68052 -9.30908 -8.59506 -8.50473 -7.87376 -6.26552 -4.34321 1.76188 1.83722 2.48958 3.18948 3.26563 3.29579 4.18513 4.31775 5.04020 5.29215 5.32557 5.70212 5.90646 5.97322 6.13465 6.31334 6.35761 6.54202 6.61503 6.71243 6.85100 7.05956 7.27954 7.42926 7.65066 7.73893 8.09632 8.69563 9.32368 10.80118 Molecular weight = 228.04amu Principal moments of inertia in cm(-1) A = 0.034803 B = 0.007511 C = 0.006683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.326884 B = 3726.816714 C = 4188.643226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.065 0.935 9 C 0.051 3.949 10 H 0.048 0.952 11 C 0.057 3.943 12 F -0.249 7.249 13 C -0.027 4.027 14 C -0.113 4.113 15 C -0.113 4.113 16 C -0.057 4.057 17 Cl -0.097 7.097 18 C -0.115 4.115 19 C -0.101 4.101 20 H 0.267 0.733 21 H 0.048 0.952 22 H 0.106 0.894 23 H 0.126 0.874 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 -7.279 0.749 8.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.083 0.917 9 C 0.032 3.968 10 H 0.066 0.934 11 C 0.002 3.998 12 F -0.230 7.230 13 C -0.027 4.027 14 C -0.131 4.131 15 C -0.132 4.132 16 C -0.083 4.083 17 Cl -0.068 7.068 18 C -0.133 4.133 19 C -0.119 4.119 20 H 0.077 0.923 21 H 0.066 0.934 22 H 0.124 0.876 23 H 0.144 0.856 24 H 0.141 0.859 25 H 0.141 0.859 26 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.113 -7.293 0.754 8.939 hybrid contribution 0.547 0.764 -0.047 0.941 sum 5.660 -6.529 0.707 8.670 Atomic orbital electron populations 1.69824 1.06012 1.27361 1.49589 1.25039 0.94978 0.99563 0.94327 0.86434 0.79797 0.82562 0.78400 1.20417 1.21017 1.19637 1.20989 0.93236 0.88903 1.52028 0.91662 1.18462 0.91913 0.90913 0.95512 0.93398 1.22505 0.96057 0.81940 0.99261 1.92618 1.82070 1.50325 1.97998 1.20600 0.95212 0.94751 0.92125 1.21091 0.98686 0.94083 0.99247 1.20910 0.95643 0.99124 0.97531 1.20727 0.96214 0.92454 0.98881 1.98313 1.61938 1.47957 1.98607 1.20959 1.00084 0.94632 0.97658 1.21042 0.94654 0.96833 0.99392 0.92324 0.93387 0.87618 0.85625 0.85920 0.85899 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.60 11.32 55.43 0.63 -22.97 15 2 C 0.06 1.62 5.30 -17.82 -0.09 1.52 15 3 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 15 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 5 H -0.28 -6.27 7.11 56.52 0.40 -5.86 15 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 7 C -0.51 -12.97 8.24 -34.44 -0.28 -13.25 15 8 H 0.07 1.64 7.60 -52.48 -0.40 1.24 15 9 C 0.05 1.20 2.28 -92.92 -0.21 0.99 15 10 H 0.05 1.22 7.88 -51.93 -0.41 0.81 15 11 C 0.06 1.33 6.55 37.16 0.24 1.57 15 12 F -0.25 -5.75 17.06 2.25 0.04 -5.71 15 13 C -0.03 -0.55 4.47 -104.62 -0.47 -1.02 15 14 C -0.11 -2.11 9.67 -39.59 -0.38 -2.49 15 15 C -0.11 -1.88 9.83 -39.55 -0.39 -2.27 15 16 C -0.06 -0.93 6.32 -39.50 -0.25 -1.18 15 17 Cl -0.10 -1.38 28.96 -51.86 -1.50 -2.88 15 18 C -0.11 -1.93 9.83 -39.55 -0.39 -2.32 15 19 C -0.10 -1.92 8.71 -39.59 -0.34 -2.26 15 20 H 0.27 6.75 8.31 -40.82 -0.34 6.41 15 21 H 0.05 1.04 7.38 -51.92 -0.38 0.66 15 22 H 0.11 2.65 6.07 -51.93 -0.32 2.33 15 23 H 0.13 2.19 7.95 -52.49 -0.42 1.78 15 24 H 0.12 1.73 8.06 -52.49 -0.42 1.31 15 25 H 0.12 1.77 8.06 -52.48 -0.42 1.35 15 26 H 0.13 2.41 7.57 -52.49 -0.40 2.02 15 LS Contribution 248.28 15.07 3.74 3.74 Total: -1.00 -25.91 248.28 -6.99 -32.90 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -2.30 Total: 0.72 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -2.57 Total: -20.71 kcal Atomic # 7 Polarization: -23.60 SS G_CDS: 0.63 Total: -22.97 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.04 Total: -5.71 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -1.50 Total: -2.88 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -25.91 -6.99 -32.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198321.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.154 kcal (2) G-P(sol) polarization free energy of solvation -25.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds