Wall clock time and date at job start Mon Mar 30 2020 03:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 11 11 F 1.39903 * 109.46594 * 299.99323 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 O 1.42903 * 109.47364 * 54.99167 * 12 9 7 14 14 C 1.35943 * 117.00038 * 179.97438 * 13 12 9 15 15 C 1.38706 * 120.03238 * 359.72992 * 14 13 12 16 16 C 1.38145 * 119.97223 * 179.79033 * 15 14 13 17 17 C 1.38454 * 120.02999 * 0.48259 * 16 15 14 18 18 F 1.35103 * 119.97066 * 179.72709 * 17 16 15 19 19 C 1.38454 * 120.05874 * 359.74636 * 17 16 15 20 20 C 1.38151 * 120.03339 * 0.02562 * 19 17 16 21 21 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47047 * 174.99759 * 12 9 7 23 23 H 1.08999 * 109.47029 * 294.99679 * 12 9 7 24 24 H 1.08008 * 120.01207 * 0.02562 * 15 14 13 25 25 H 1.08001 * 119.98871 * 180.21385 * 16 15 14 26 26 H 1.07999 * 119.98739 * 179.97438 * 19 17 16 27 27 H 1.07994 * 120.01703 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6247 -2.5564 -0.8919 11 9 0.4464 -2.5739 1.1404 12 6 2.2453 -3.6621 -0.0015 13 8 3.1415 -3.5224 1.1028 14 6 4.0944 -4.4808 1.2493 15 6 4.1613 -5.5362 0.3518 16 6 5.1329 -6.5071 0.4993 17 6 6.0335 -6.4324 1.5482 18 9 6.9798 -7.3855 1.6945 19 6 5.9650 -5.3819 2.4476 20 6 4.9973 -4.4071 2.2997 21 1 -0.4850 -0.8401 -0.0004 22 1 1.7032 -4.6035 0.0873 23 1 2.8121 -3.6556 -0.9324 24 1 3.4563 -5.5970 -0.4642 25 1 5.1873 -7.3272 -0.2014 26 1 6.6679 -5.3250 3.2656 27 1 4.9439 -3.5881 3.0016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260644714.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:32 Heat of formation + Delta-G solvation = -120.983650 kcal Electronic energy + Delta-G solvation = -15143.879573 eV Core-core repulsion = 12116.591755 eV Total energy + Delta-G solvation = -3027.287818 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.75567 -46.05518 -39.75651 -36.94967 -33.17797 -31.25293 -30.22480 -28.57051 -24.97059 -23.09470 -22.25254 -20.94958 -18.21034 -17.49563 -17.05986 -16.41759 -15.59946 -15.21383 -14.83342 -14.48371 -14.21767 -13.79250 -13.58074 -13.46277 -13.16828 -12.80599 -12.10995 -12.02808 -11.54512 -10.93312 -10.82372 -10.59863 -10.49999 -10.14029 -9.80352 -9.14382 -8.60791 -8.53818 -7.88601 -6.53120 -4.35294 1.21325 1.33767 3.38408 3.42109 3.59434 3.60717 3.67295 4.37183 4.43163 4.74395 4.82673 5.17222 5.22170 5.36251 5.51831 5.60550 5.66132 5.76058 5.94678 6.15844 6.21867 6.34602 6.39568 6.79403 7.24438 7.61599 7.81263 8.26925 8.64632 9.44156 10.86082 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.044039 B = 0.006086 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.651936 B = 4599.676902 C = 4947.619775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.030 3.970 3 Si 1.075 2.925 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.633 4.633 8 H 0.065 0.935 9 C 0.199 3.801 10 H 0.052 0.948 11 F -0.237 7.237 12 C 0.049 3.951 13 O -0.279 6.279 14 C 0.136 3.864 15 C -0.191 4.191 16 C -0.111 4.111 17 C 0.039 3.961 18 F -0.148 7.148 19 C -0.112 4.112 20 C -0.131 4.131 21 H 0.274 0.726 22 H 0.050 0.950 23 H 0.068 0.932 24 H 0.136 0.864 25 H 0.133 0.867 26 H 0.138 0.862 27 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.144 -10.366 0.762 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.177 4.177 3 Si 0.902 3.098 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.670 4.670 8 H 0.083 0.917 9 C 0.163 3.837 10 H 0.069 0.931 11 F -0.218 7.218 12 C -0.026 4.026 13 O -0.191 6.191 14 C 0.088 3.912 15 C -0.210 4.210 16 C -0.130 4.130 17 C 0.020 3.980 18 F -0.127 7.127 19 C -0.130 4.130 20 C -0.149 4.149 21 H 0.085 0.915 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.154 0.846 25 H 0.151 0.849 26 H 0.156 0.844 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.884 -8.582 0.905 12.386 hybrid contribution 0.291 -2.126 -0.144 2.151 sum 9.175 -10.709 0.761 14.122 Atomic orbital electron populations 1.70746 1.06949 1.31360 1.43785 1.25985 0.96372 1.03131 0.92198 0.83469 0.74874 0.74689 0.76797 1.20596 1.21076 1.21172 1.22166 0.95139 0.90723 1.58980 0.91715 1.19415 0.86649 0.94417 0.83201 0.93086 1.92753 1.76133 1.97406 1.55529 1.23584 0.91387 0.99718 0.87935 1.86391 1.40377 1.43841 1.48453 1.19340 0.89708 0.88360 0.93778 1.21183 1.01903 0.95937 1.01949 1.20868 0.94783 0.99863 0.97455 1.17504 0.91476 0.89854 0.99141 1.91453 1.62854 1.62648 1.95724 1.20899 0.99422 0.93419 0.99300 1.20346 0.95135 1.00727 0.98712 0.91525 0.93205 0.91359 0.84575 0.84904 0.84429 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.56 55.43 0.75 -26.21 15 2 C 0.03 0.87 5.42 -17.82 -0.10 0.77 15 3 Si 1.07 24.84 29.90 -169.99 -5.08 19.76 15 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 6 H -0.29 -6.20 7.11 56.52 0.40 -5.80 15 7 C -0.63 -17.56 8.46 -34.44 -0.29 -17.86 15 8 H 0.06 1.78 7.55 -52.49 -0.40 1.39 15 9 C 0.20 4.96 3.16 -27.88 -0.09 4.88 15 10 H 0.05 1.25 8.01 -51.93 -0.42 0.84 15 11 F -0.24 -6.46 15.96 2.25 0.04 -6.42 15 12 C 0.05 0.99 4.64 37.16 0.17 1.16 15 13 O -0.28 -5.86 9.48 -19.56 -0.19 -6.05 15 14 C 0.14 2.33 6.69 -39.23 -0.26 2.07 15 15 C -0.19 -2.80 9.04 -39.44 -0.36 -3.15 15 16 C -0.11 -1.45 10.02 -39.54 -0.40 -1.85 15 17 C 0.04 0.54 7.30 -39.42 -0.29 0.25 15 18 F -0.15 -2.00 17.27 2.25 0.04 -1.96 15 19 C -0.11 -1.46 10.02 -39.53 -0.40 -1.86 15 20 C -0.13 -1.97 9.99 -39.44 -0.39 -2.36 15 21 H 0.27 8.25 6.59 -40.82 -0.27 7.99 15 22 H 0.05 0.87 7.65 -51.93 -0.40 0.47 15 23 H 0.07 1.23 7.67 -51.93 -0.40 0.83 15 24 H 0.14 1.80 6.30 -52.48 -0.33 1.46 15 25 H 0.13 1.41 8.06 -52.49 -0.42 0.99 15 26 H 0.14 1.44 8.06 -52.49 -0.42 1.02 15 27 H 0.14 2.01 8.06 -52.49 -0.42 1.59 15 LS Contribution 250.15 15.07 3.77 3.77 Total: -1.00 -31.00 250.15 -5.34 -36.34 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -2.27 Total: -1.27 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -2.40 Total: -17.96 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.75 Total: -26.21 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.19 Total: -6.05 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 0.07 Total: -8.38 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.08 Total: 19.76 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.00 -5.34 -36.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260644714.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.640 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds