Wall clock time and date at job start Mon Mar 30 2020 03:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00103 * 2 1 4 4 H 1.48499 * 109.47243 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46616 * 119.99975 * 3 2 1 6 6 H 1.48491 * 109.47088 * 240.00137 * 3 2 1 7 7 C 1.37875 * 119.99405 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99293 * 181.78230 * 7 2 1 9 9 C 1.50696 * 120.00680 * 1.77803 * 7 2 1 10 10 H 1.08998 * 109.47209 * 28.80276 * 9 7 2 11 11 O 1.42894 * 109.47340 * 148.80256 * 9 7 2 12 12 C 1.42902 * 114.00333 * 266.59153 * 11 9 7 13 13 F 1.39897 * 109.47043 * 303.43481 * 12 11 9 14 14 F 1.39900 * 109.46690 * 63.43206 * 12 11 9 15 15 C 1.50699 * 109.47287 * 268.80633 * 9 7 2 16 16 C 1.38237 * 120.00122 * 279.72460 * 15 9 7 17 17 C 1.38234 * 120.00348 * 179.78706 * 16 15 9 18 18 C 1.38242 * 119.99528 * 0.44154 * 17 16 15 19 19 C 1.38230 * 120.00009 * 359.81338 * 18 17 16 20 20 C 1.38233 * 120.00149 * 99.99486 * 15 9 7 21 21 H 0.97002 * 120.00190 * 175.70091 * 1 2 3 22 22 H 1.09007 * 109.47108 * 183.43010 * 12 11 9 23 23 H 1.08006 * 119.99509 * 359.97438 * 16 15 9 24 24 H 1.08000 * 120.00217 * 180.27823 * 17 16 15 25 25 H 1.07998 * 119.99390 * 179.83847 * 18 17 16 26 26 H 1.08002 * 119.99850 * 180.02562 * 19 18 17 27 27 H 1.08000 * 120.00442 * 359.97438 * 20 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 0.0006 5 1 3.1029 1.6962 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0841 -1.1943 0.0286 9 6 1.2515 -2.4988 -0.0416 10 1 0.3036 -2.3552 -0.5602 11 8 2.0300 -3.4765 -0.7345 12 6 1.7362 -3.5713 -2.1297 13 9 0.3742 -3.8405 -2.3022 14 9 2.0555 -2.3621 -2.7567 15 6 0.9880 -2.9713 1.3649 16 6 1.9838 -3.6143 2.0761 17 6 1.7435 -4.0437 3.3679 18 6 0.5044 -3.8383 3.9453 19 6 -0.4931 -3.2000 3.2322 20 6 -0.2514 -2.7666 1.9420 21 1 -0.4850 -0.8377 -0.0630 22 1 2.3244 -4.3759 -2.5711 23 1 2.9506 -3.7784 1.6235 24 1 2.5230 -4.5421 3.9251 25 1 0.3158 -4.1761 4.9536 26 1 -1.4611 -3.0392 3.6835 27 1 -1.0307 -2.2678 1.3851 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261183194.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:25 Heat of formation + Delta-G solvation = -160.617921 kcal Electronic energy + Delta-G solvation = -15941.270159 eV Core-core repulsion = 12912.263670 eV Total energy + Delta-G solvation = -3029.006489 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.88126 -48.00514 -40.27426 -38.26768 -35.27558 -32.35140 -31.69358 -28.53396 -26.36018 -24.88496 -23.31167 -22.20125 -19.61736 -19.07861 -18.67744 -18.25463 -17.41066 -16.11709 -16.02063 -15.73342 -15.31072 -15.01738 -14.80294 -14.41329 -14.36869 -14.14576 -13.82786 -13.42253 -12.93211 -12.72871 -12.66228 -12.32691 -12.00522 -11.92670 -11.68525 -10.70261 -10.67306 -9.74407 -9.47364 -8.72713 -6.48866 0.56691 0.58898 1.48817 1.56918 1.76064 2.35225 2.52038 2.83862 3.01830 3.13780 3.81891 3.97921 4.06734 4.19129 4.25945 4.34964 4.52944 4.77694 4.81632 5.16815 5.22703 5.50251 5.64604 5.68070 5.71209 5.89044 6.20961 6.23985 6.42720 7.29462 8.62310 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.013546 C = 0.009352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.282688 B = 2066.551330 C = 2993.243795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.018 4.018 3 Si 1.112 2.888 4 H -0.279 1.279 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.610 4.610 8 H 0.051 0.949 9 C 0.225 3.775 10 H 0.016 0.984 11 O -0.401 6.401 12 C 0.396 3.604 13 F -0.230 7.230 14 F -0.222 7.222 15 C -0.072 4.072 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.133 4.133 19 C -0.123 4.123 20 C -0.141 4.141 21 H 0.258 0.742 22 H 0.215 0.785 23 H 0.114 0.886 24 H 0.151 0.849 25 H 0.156 0.844 26 H 0.141 0.859 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 -8.036 2.701 8.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.218 4.218 3 Si 0.933 3.067 4 H -0.205 1.205 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.647 4.647 8 H 0.070 0.930 9 C 0.170 3.830 10 H 0.034 0.966 11 O -0.323 6.323 12 C 0.305 3.695 13 F -0.213 7.213 14 F -0.204 7.204 15 C -0.072 4.072 16 C -0.139 4.139 17 C -0.138 4.138 18 C -0.151 4.151 19 C -0.141 4.141 20 C -0.160 4.160 21 H 0.070 0.930 22 H 0.231 0.769 23 H 0.132 0.868 24 H 0.168 0.832 25 H 0.174 0.826 26 H 0.159 0.841 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.783 -6.500 2.825 7.614 hybrid contribution -0.332 -1.218 -0.661 1.425 sum 2.451 -7.718 2.164 8.382 Atomic orbital electron populations 1.70944 1.07606 1.30384 1.46686 1.27248 0.96519 1.06165 0.91847 0.83004 0.74337 0.71368 0.77964 1.20458 1.19491 1.19597 1.22322 0.94659 0.91842 1.55877 0.93047 1.18810 0.90727 0.86218 0.87283 0.96605 1.88181 1.64186 1.60440 1.19493 1.23856 0.78033 0.85460 0.82139 1.92969 1.39121 1.93886 1.95299 1.93037 1.92372 1.52017 1.83008 1.20269 0.94062 0.95797 0.97088 1.20981 0.98458 0.99035 0.95425 1.21445 0.98219 0.99980 0.94200 1.21412 0.92938 0.99859 1.00910 1.21318 1.00708 0.98680 0.93357 1.20982 0.96148 1.01441 0.97386 0.93027 0.76925 0.86785 0.83158 0.82636 0.84123 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.62 13.63 21.45 0.29 -55.33 15 2 C -0.02 -1.01 5.46 84.65 0.46 -0.55 15 3 Si 1.11 50.84 29.90 68.60 2.05 52.89 15 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 7 C -0.61 -34.77 8.06 25.60 0.21 -34.56 15 8 H 0.05 2.96 7.81 -2.91 -0.02 2.94 15 9 C 0.23 11.82 1.95 29.10 0.06 11.88 15 10 H 0.02 0.93 5.23 -2.39 -0.01 0.92 15 11 O -0.40 -18.45 9.58 -148.98 -1.43 -19.87 15 12 C 0.40 15.25 6.27 113.37 0.71 15.96 15 13 F -0.23 -9.53 16.47 44.97 0.74 -8.79 15 14 F -0.22 -9.96 16.72 44.97 0.75 -9.21 15 15 C -0.07 -3.43 4.96 -19.87 -0.10 -3.53 15 16 C -0.12 -5.02 9.35 22.27 0.21 -4.81 15 17 C -0.12 -3.97 10.05 22.27 0.22 -3.74 15 18 C -0.13 -4.10 10.05 22.27 0.22 -3.88 15 19 C -0.12 -4.38 10.05 22.27 0.22 -4.16 15 20 C -0.14 -6.37 9.51 22.27 0.21 -6.16 15 21 H 0.26 15.78 5.34 -92.71 -0.49 15.29 15 22 H 0.21 5.20 8.14 -2.38 -0.02 5.19 15 23 H 0.11 4.68 7.77 -2.91 -0.02 4.65 15 24 H 0.15 3.73 8.06 -2.91 -0.02 3.71 15 25 H 0.16 3.41 8.06 -2.91 -0.02 3.38 15 26 H 0.14 4.11 8.06 -2.91 -0.02 4.08 15 27 H 0.09 4.56 7.00 -2.91 -0.02 4.54 15 Total: -1.00 -69.16 248.80 6.30 -62.86 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.46 Total: 10.99 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 2.43 Total: -33.54 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.29 Total: -55.33 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -1.43 Total: -19.87 kcal Atomic # 9 Polarization: -19.49 SS G_CDS: 1.49 Total: -18.00 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.05 Total: 52.89 kcal Total: -69.16 6.30 -62.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261183194.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.757 kcal (2) G-P(sol) polarization free energy of solvation -69.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds