Wall clock time and date at job start Mon Mar 30 2020 02:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00024 * 2 1 4 4 H 1.48504 * 109.46953 * 269.99985 * 3 2 1 5 5 H 1.48492 * 109.47194 * 29.99955 * 3 2 1 6 6 H 1.48500 * 109.47200 * 150.00131 * 3 2 1 7 7 C 1.37878 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00130 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00092 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47416 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99818 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00533 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99548 * 179.97438 * 11 10 9 14 14 C 1.39085 * 120.00032 * 180.02562 * 13 11 10 15 15 N 1.29889 * 125.65262 * 0.03391 * 14 13 11 16 16 N 1.26249 * 117.66059 * 179.97438 * 15 14 13 17 17 C 1.29504 * 116.58371 * 359.97438 * 16 15 14 18 18 S 1.71310 * 125.65441 * 179.71953 * 14 13 11 19 19 H 0.96996 * 120.00062 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47521 * 59.99747 * 9 7 2 21 21 H 1.09011 * 109.46767 * 299.99933 * 9 7 2 22 22 H 0.96996 * 119.99601 * 0.02562 * 10 9 7 23 23 H 0.97000 * 120.00675 * 0.02562 * 13 11 10 24 24 H 1.07995 * 126.14741 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5584 -5.1056 0.0011 13 7 2.6296 -5.9077 0.0005 14 6 2.1660 -7.2191 0.0005 15 7 0.9186 -7.5811 0.0004 16 7 0.6674 -8.8183 -0.0001 17 6 1.6870 -9.6167 -0.0009 18 16 3.1456 -8.6245 -0.0069 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5572 -0.8896 21 1 0.6240 -2.5567 0.8904 22 1 3.1567 -3.4354 0.0009 23 1 3.5833 -5.7306 0.0002 24 1 1.6510 -10.6961 -0.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306400874.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:00 Heat of formation + Delta-G solvation = 18.504489 kcal Electronic energy + Delta-G solvation = -12968.729050 eV Core-core repulsion = 10430.082685 eV Total energy + Delta-G solvation = -2538.646364 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 228.042 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.34117 -40.99775 -36.68532 -36.05047 -34.41362 -31.59729 -29.39729 -27.22441 -25.00868 -23.35939 -21.28445 -20.88324 -19.45278 -18.60749 -17.98327 -17.26594 -16.82524 -16.11598 -15.95081 -15.60297 -14.93026 -14.26688 -14.22469 -14.07001 -12.91596 -12.77921 -12.58918 -12.22866 -11.76739 -11.49066 -11.43783 -10.88084 -10.82200 -10.62707 -10.16611 -9.69004 -8.28681 -6.45890 -0.45340 -0.42439 0.23774 1.42427 1.47931 1.49718 1.57733 1.59794 2.14337 2.38528 3.01774 3.06924 3.64214 3.98195 4.56264 4.93090 5.01024 5.22380 5.39481 5.49860 5.77303 5.88932 6.64143 6.96347 7.23366 7.45089 7.73720 8.83675 Molecular weight = 228.04amu Principal moments of inertia in cm(-1) A = 0.084486 B = 0.005007 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.336517 B = 5590.856601 C = 5907.046593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.988 3.012 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.555 4.555 8 H 0.089 0.911 9 C 0.284 3.716 10 N -0.706 5.706 11 C 0.686 3.314 12 O -0.591 6.591 13 N -0.621 5.621 14 C 0.224 3.776 15 N -0.339 5.339 16 N -0.278 5.278 17 C -0.014 4.014 18 S 0.204 5.796 19 H 0.269 0.731 20 H -0.011 1.011 21 H -0.011 1.011 22 H 0.411 0.589 23 H 0.441 0.559 24 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.396 -16.607 -0.001 21.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.811 3.189 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.593 4.593 8 H 0.107 0.893 9 C 0.161 3.839 10 N -0.360 5.360 11 C 0.383 3.617 12 O -0.466 6.466 13 N -0.278 5.278 14 C -0.148 4.148 15 N -0.184 5.184 16 N -0.111 5.111 17 C -0.317 4.317 18 S 0.441 5.559 19 H 0.078 0.922 20 H 0.007 0.993 21 H 0.007 0.993 22 H 0.248 0.752 23 H 0.283 0.717 24 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 12.816 -16.453 -0.004 20.855 hybrid contribution 0.446 1.124 -0.008 1.209 sum 13.262 -15.329 -0.012 20.270 Atomic orbital electron populations 1.70149 1.08389 1.28663 1.49804 1.26084 0.95746 1.03964 0.93814 0.85109 0.78484 0.76751 0.78561 1.19645 1.21169 1.17654 1.21587 0.94514 0.90074 1.53099 0.89266 1.18540 0.88028 0.82919 0.94423 1.45270 1.11568 1.02740 1.76466 1.16322 0.85015 0.81530 0.78818 1.91023 1.15765 1.83700 1.56118 1.41799 1.10910 0.99723 1.75364 1.26106 0.93802 0.92954 1.01890 1.71539 1.16268 1.08724 1.21857 1.71356 1.29522 0.95595 1.14662 1.32086 0.87691 1.07798 1.04139 1.84252 1.09066 0.93404 1.69219 0.92217 0.99282 0.99256 0.75238 0.71673 0.71838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.29 21.45 0.28 -55.89 14 2 C 0.00 0.20 5.46 84.66 0.46 0.66 14 3 Si 0.99 41.59 29.54 68.60 2.03 43.62 14 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 14 5 H -0.29 -12.05 7.11 99.48 0.71 -11.34 14 6 H -0.25 -9.77 7.11 99.48 0.71 -9.07 14 7 C -0.55 -29.52 9.28 25.60 0.24 -29.28 14 8 H 0.09 4.19 7.60 -2.91 -0.02 4.17 14 9 C 0.28 15.52 5.43 85.63 0.46 15.99 14 10 N -0.71 -29.35 5.55 -482.30 -2.68 -32.03 14 11 C 0.69 29.00 8.53 179.06 1.53 30.52 14 12 O -0.59 -32.22 15.02 -3.97 -0.06 -32.28 14 13 N -0.62 -18.24 5.41 -326.97 -1.77 -20.00 14 14 C 0.22 6.69 8.14 179.10 1.46 8.15 14 15 N -0.34 -13.20 9.73 -59.09 -0.58 -13.77 14 16 N -0.28 -8.82 11.65 -57.37 -0.67 -9.49 14 17 C -0.01 -0.25 12.69 130.59 1.66 1.40 14 18 S 0.20 3.17 23.31 -56.49 -1.32 1.85 14 19 H 0.27 15.16 8.31 -92.71 -0.77 14.39 14 20 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 14 21 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 14 22 H 0.41 13.20 8.34 -92.71 -0.77 12.42 14 23 H 0.44 8.02 8.84 -92.71 -0.82 7.20 14 24 H 0.27 1.58 8.06 -2.91 -0.02 1.55 14 Total: -1.00 -83.65 241.76 0.72 -82.92 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -0.33 Total: 7.63 kcal Atomic # 6 Polarization: 21.64 SS G_CDS: 5.81 Total: 27.45 kcal Atomic # 7 Polarization: -125.78 SS G_CDS: -5.41 Total: -131.18 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.06 Total: -32.28 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.32 Total: 1.85 kcal Total: -83.65 0.72 -82.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306400874.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.427 kcal (2) G-P(sol) polarization free energy of solvation -83.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds