Wall clock time and date at job start Mon Mar 30 2020 02:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38038 * 119.99993 * 2 1 4 4 S 1.76204 * 126.05930 * 0.02922 * 3 2 1 5 5 C 1.75977 * 90.27498 * 179.97438 * 4 3 2 6 6 N 1.28414 * 110.18803 * 359.97438 * 5 4 3 7 7 C 1.33671 * 117.35462 * 0.02562 * 6 5 4 8 8 C 1.46219 * 122.85261 * 179.97438 * 7 6 5 9 9 O 1.21704 * 120.00398 * 180.02562 * 8 7 6 10 10 O 1.34929 * 120.00245 * 0.02562 * 8 7 6 11 11 C 1.34885 * 117.00584 * 180.02562 * 10 8 7 12 12 H 1.08005 * 119.99854 * 0.02562 * 11 10 8 13 13 C 1.38727 * 120.00152 * 180.02562 * 11 10 8 14 14 N 1.31470 * 120.00146 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00359 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47291 * 89.99963 * 15 13 11 17 17 H 1.48502 * 109.47652 * 210.00090 * 15 13 11 18 18 H 1.48503 * 109.47153 * 330.00465 * 15 13 11 19 19 H 1.09003 * 109.47116 * 59.99434 * 1 2 3 20 20 H 1.09000 * 109.47089 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46760 * 299.99588 * 1 2 3 22 22 H 0.96998 * 119.99876 * 180.02562 * 2 1 3 23 23 H 1.08001 * 124.90679 * 180.26392 * 5 4 3 24 24 H 0.96997 * 120.00694 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1552 1.1954 0.0000 4 16 1.4402 2.8059 0.0007 5 6 3.0451 3.5277 0.0010 6 7 3.9436 2.6103 0.0011 7 6 3.5252 1.3407 0.0005 8 6 4.4435 0.2029 0.0000 9 8 4.0056 -0.9326 -0.0011 10 8 5.7765 0.4117 0.0006 11 6 6.5676 -0.6808 -0.0004 12 1 6.1267 -1.6667 -0.0022 13 6 7.9475 -0.5380 0.0007 14 7 8.7186 -1.6028 0.0002 15 14 8.7101 1.1672 0.0030 16 1 8.9112 1.6177 1.4037 17 1 10.0196 1.1249 -0.6961 18 1 7.8058 2.1148 -0.6966 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.9500 -0.8400 -0.0004 23 1 3.2454 4.5890 0.0055 24 1 9.6834 -1.5031 0.0007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306567310.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:27 Heat of formation + Delta-G solvation = -29.008863 kcal Electronic energy + Delta-G solvation = -13389.216462 eV Core-core repulsion = 10816.217013 eV Total energy + Delta-G solvation = -2572.999449 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 228.035 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.71612 -38.15182 -36.25155 -35.04195 -32.24323 -29.64670 -26.87351 -25.18825 -23.85608 -22.06428 -19.64347 -18.26624 -17.89360 -16.62806 -15.96391 -15.20768 -14.87541 -14.77116 -14.28777 -14.01982 -13.58444 -13.29495 -12.58746 -12.39528 -12.04752 -11.57097 -11.22370 -10.76606 -10.43560 -10.27753 -9.64417 -9.42872 -9.27686 -8.91651 -8.61492 -7.48541 -6.33246 -4.04993 1.03632 1.11122 1.77579 2.53364 3.30901 3.34446 3.37033 3.54432 4.05564 4.27243 4.36257 4.80290 4.90951 5.16612 5.20156 5.33591 5.42413 5.91431 6.52221 6.85344 7.42955 7.81279 7.95958 8.10005 8.64464 9.05749 9.76787 10.74384 Molecular weight = 228.04amu Principal moments of inertia in cm(-1) A = 0.040438 B = 0.008356 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.258140 B = 3350.126600 C = 4027.240924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.680 5.680 3 C 0.166 3.834 4 S 0.038 5.962 5 C 0.006 3.994 6 N -0.379 5.379 7 C -0.085 4.085 8 C 0.496 3.504 9 O -0.557 6.557 10 O -0.225 6.225 11 C -0.377 4.377 12 H 0.110 0.890 13 C 0.066 3.934 14 N -0.873 5.873 15 Si 0.903 3.097 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.253 1.253 19 H 0.060 0.940 20 H 0.086 0.914 21 H 0.060 0.940 22 H 0.430 0.570 23 H 0.203 0.797 24 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.976 9.237 -0.027 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.315 5.315 3 C -0.066 4.066 4 S 0.279 5.721 5 C -0.299 4.299 6 N -0.089 5.089 7 C -0.218 4.218 8 C 0.343 3.657 9 O -0.455 6.455 10 O -0.131 6.131 11 C -0.453 4.453 12 H 0.128 0.872 13 C -0.138 4.138 14 N -0.512 5.512 15 Si 0.728 3.272 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.176 1.176 19 H 0.079 0.921 20 H 0.105 0.895 21 H 0.079 0.921 22 H 0.275 0.725 23 H 0.220 0.780 24 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.424 9.327 -0.030 18.888 hybrid contribution 1.120 -0.337 0.024 1.170 sum -15.304 8.990 -0.006 17.749 Atomic orbital electron populations 1.21884 0.79085 1.03800 1.01786 1.44185 1.06069 1.05374 1.75899 1.23719 0.93236 0.91777 0.97895 1.84749 1.15290 0.95776 1.76313 1.28414 0.86573 1.02538 1.12331 1.66226 1.34881 0.99059 1.08781 1.19161 0.88456 0.90333 1.23893 1.18936 0.82216 0.85786 0.78744 1.90541 1.77708 1.23749 1.53529 1.83697 1.15506 1.38010 1.75891 1.20720 0.87511 0.85873 1.51168 0.87247 1.24539 0.94744 0.99118 0.95353 1.69623 1.05219 1.29008 1.47323 0.86212 0.78307 0.83488 0.79165 1.19830 1.20883 1.17636 0.92120 0.89492 0.92112 0.72466 0.78020 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.68 59.85 0.64 1.39 14 2 N -0.68 -10.18 5.79 -65.79 -0.38 -10.56 14 3 C 0.17 2.82 7.29 -14.93 -0.11 2.72 14 4 S 0.04 0.47 22.68 -107.50 -2.44 -1.97 14 5 C 0.01 0.09 12.43 51.33 0.64 0.72 14 6 N -0.38 -7.54 10.46 -10.81 -0.11 -7.66 14 7 C -0.09 -1.82 6.74 -84.03 -0.57 -2.39 14 8 C 0.50 12.94 7.85 33.94 0.27 13.21 14 9 O -0.56 -14.87 13.74 -19.43 -0.27 -15.14 14 10 O -0.22 -6.52 8.49 -22.27 -0.19 -6.71 14 11 C -0.38 -11.72 10.11 30.91 0.31 -11.40 14 12 H 0.11 3.66 7.09 -52.48 -0.37 3.28 14 13 C 0.07 1.99 5.49 -17.53 -0.10 1.89 14 14 N -0.87 -26.51 13.96 55.48 0.77 -25.73 14 15 Si 0.90 22.79 28.62 -169.99 -4.86 17.93 14 16 H -0.27 -6.73 7.11 56.52 0.40 -6.32 14 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 14 18 H -0.25 -6.45 7.11 56.52 0.40 -6.05 14 19 H 0.06 0.51 8.14 -51.93 -0.42 0.09 14 20 H 0.09 0.64 8.14 -51.93 -0.42 0.21 14 21 H 0.06 0.51 8.14 -51.93 -0.42 0.09 14 22 H 0.43 7.32 6.41 -40.82 -0.26 7.06 14 23 H 0.20 1.99 8.06 -52.49 -0.42 1.57 14 24 H 0.28 7.75 8.31 -40.82 -0.34 7.41 14 LS Contribution 239.94 15.07 3.62 3.62 Total: -1.00 -34.89 239.94 -4.24 -39.12 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -1.46 Total: 0.96 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 1.08 Total: 6.14 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.28 Total: -43.95 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.46 Total: -21.85 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.86 Total: 17.93 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -2.44 Total: -1.97 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -34.89 -4.24 -39.12 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306567310.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.115 kcal (2) G-P(sol) polarization free energy of solvation -34.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds